0.015946
0.000000
0.000000
0.000000
0.015374
0.000000
0.000000
0.000000
0.009041
0.00000
0.00000
0.00000
Muench, S.P.
Xu, L.
Sedelnikova, S.E.
Rice, D.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
62.711
65.045
110.610
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H15 N5 O11 P2
443.201
n
GUANOSINE-5'-DIPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Proc.Natl.Acad.Sci.Usa
PNASA6
0040
0027-8424
103
12359
12364
10.1073/pnas.0602585103
16894162
The essential GTPase YphC displays a major domain rearrangement associated with nucleotide binding.
2006
DK
Acta Crystallogr.,Sect.F
1744-3091
62
435
437
10.1107/S1744309106011456
16682769
Cloning, purification and preliminary crystallographic analysis of the Bacillus subtilis GTPase YphC-GDP complex.
2006
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2005-06-27
MAR CCD 165 mm
double crystal Si(III)monochromator
MAD
M
x-ray
1
0.9794
1.0
0.9797
1.0
1.0094
1.0
PX10.1
SRS
0.9794, 0.9797, 1.0094
SYNCHROTRON
SRS BEAMLINE PX10.1
49391.242
GTP-binding protein engA
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
443.201
GUANOSINE-5'-DIPHOSPHATE
2
syn
non-polymer
18.015
water
31
nat
water
no
yes
(MSE)GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA
EIA(MSE)DEADVIIF(MSE)VNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE(MSE)RANIYDFYSLGFGEPYPI
SGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNA(MSE)LGEERVIVSNVAGTTRDAVDTSFTY
NQQEFVIVDTAG(MSE)RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKW
DAVDKDEST(MSE)KEFEENIRDHFQFLDYAPILF(MSE)SALTKKRIHTL(MSE)PAIIKASENHSLRVQTNVLNDVI
(MSE)DAVA(MSE)NPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPEL(MSE)HFSYERFLENRIRDAFGFEGTPIKIF
ARARK
MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM
DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVA
EHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVY
ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL
DYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVN
DPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacillus
168
Escherichia
sample
engA
1423
Bacillus subtilis
562
Escherichia coli
E. coli Tuner (DE3)
peTBLUE-1
pMAT1
1
2.28
46.12
VAPOR DIFFUSION, HANGING DROP
8.0
0.2M sodium flouride, 20% (w/v) PEG3350, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K
290
audit_author
repository
Initial release
Version format compliance
Version format compliance
Structure summary
1
0
2006-08-08
1
1
2008-05-01
1
2
2011-07-13
1
3
2018-01-24
_audit_author.name
Structural analysis of the domain interactions in Der, a switch protein containing two GTPase domains
RCSB
Y
RCSB
2006-06-30
REL
REL
ZN
ZINC ION
GDP
GUANOSINE-5'-DIPHOSPHATE
HOH
water
ZN
900
2
ZN
ZN
900
A
GDP
500
3
GDP
GDP
500
A
GDP
800
3
GDP
GDP
800
A
HOH
1
4
HOH
HOH
901
A
HOH
2
4
HOH
HOH
902
A
HOH
3
4
HOH
HOH
903
A
HOH
4
4
HOH
HOH
904
A
HOH
5
4
HOH
HOH
905
A
HOH
6
4
HOH
HOH
906
A
HOH
7
4
HOH
HOH
907
A
HOH
8
4
HOH
HOH
908
A
HOH
9
4
HOH
HOH
909
A
HOH
10
4
HOH
HOH
910
A
HOH
11
4
HOH
HOH
911
A
HOH
12
4
HOH
HOH
912
A
HOH
13
4
HOH
HOH
913
A
HOH
15
4
HOH
HOH
914
A
HOH
16
4
HOH
HOH
915
A
HOH
17
4
HOH
HOH
916
A
HOH
18
4
HOH
HOH
917
A
HOH
19
4
HOH
HOH
918
A
HOH
20
4
HOH
HOH
919
A
HOH
21
4
HOH
HOH
920
A
HOH
22
4
HOH
HOH
921
A
HOH
23
4
HOH
HOH
922
A
HOH
24
4
HOH
HOH
923
A
HOH
25
4
HOH
HOH
924
A
HOH
26
4
HOH
HOH
925
A
HOH
27
4
HOH
HOH
926
A
HOH
28
4
HOH
HOH
927
A
HOH
29
4
HOH
HOH
928
A
HOH
30
4
HOH
HOH
929
A
HOH
31
4
HOH
HOH
930
A
HOH
32
4
HOH
HOH
931
A
n
1
1
A
n
2
2
A
LYS
3
n
3
LYS
3
A
PRO
4
n
4
PRO
4
A
VAL
5
n
5
VAL
5
A
VAL
6
n
6
VAL
6
A
ALA
7
n
7
ALA
7
A
ILE
8
n
8
ILE
8
A
VAL
9
n
9
VAL
9
A
GLY
10
n
10
GLY
10
A
ARG
11
n
11
ARG
11
A
PRO
12
n
12
PRO
12
A
ASN
13
n
13
ASN
13
A
VAL
14
n
14
VAL
14
A
GLY
15
n
15
GLY
15
A
LYS
16
n
16
LYS
16
A
SER
17
n
17
SER
17
A
THR
18
n
18
THR
18
A
ILE
19
n
19
ILE
19
A
PHE
20
n
20
PHE
20
A
ASN
21
n
21
ASN
21
A
ARG
22
n
22
ARG
22
A
ILE
23
n
23
ILE
23
A
ALA
24
n
24
ALA
24
A
GLY
25
n
25
GLY
25
A
GLU
26
n
26
GLU
26
A
ARG
27
n
27
ARG
27
A
ILE
28
n
28
ILE
28
A
SER
29
n
29
SER
29
A
n
30
30
A
n
31
31
A
n
32
32
A
n
33
33
A
n
34
34
A
n
35
35
A
n
36
36
A
n
37
37
A
n
38
38
A
n
39
39
A
n
40
40
A
ARG
41
n
41
ARG
41
A
ILE
42
n
42
ILE
42
A
TYR
43
n
43
TYR
43
A
SER
44
n
44
SER
44
A
SER
45
n
45
SER
45
A
ALA
46
n
46
ALA
46
A
GLU
47
n
47
GLU
47
A
TRP
48
n
48
TRP
48
A
LEU
49
n
49
LEU
49
A
ASN
50
n
50
ASN
50
A
TYR
51
n
51
TYR
51
A
ASP
52
n
52
ASP
52
A
PHE
53
n
53
PHE
53
A
ASN
54
n
54
ASN
54
A
LEU
55
n
55
LEU
55
A
ILE
56
n
56
ILE
56
A
ASP
57
n
57
ASP
57
A
n
58
58
A
n
59
59
A
n
60
60
A
n
61
61
A
n
62
62
A
n
63
63
A
n
64
64
A
n
65
65
A
n
66
66
A
PRO
67
n
67
PRO
67
A
PHE
68
n
68
PHE
68
A
LEU
69
n
69
LEU
69
A
ALA
70
n
70
ALA
70
A
GLN
71
n
71
GLN
71
A
ILE
72
n
72
ILE
72
A
ARG
73
n
73
ARG
73
A
GLN
74
n
74
GLN
74
A
GLN
75
n
75
GLN
75
A
ALA
76
n
76
ALA
76
A
GLU
77
n
77
GLU
77
A
ILE
78
n
78
ILE
78
A
ALA
79
n
79
ALA
79
A
MSE
80
n
80
MSE
80
A
ASP
81
n
81
ASP
81
A
GLU
82
n
82
GLU
82
A
ALA
83
n
83
ALA
83
A
ASP
84
n
84
ASP
84
A
VAL
85
n
85
VAL
85
A
ILE
86
n
86
ILE
86
A
ILE
87
n
87
ILE
87
A
PHE
88
n
88
PHE
88
A
MSE
89
n
89
MSE
89
A
VAL
90
n
90
VAL
90
A
ASN
91
n
91
ASN
91
A
GLY
92
n
92
GLY
92
A
ARG
93
n
93
ARG
93
A
GLU
94
n
94
GLU
94
A
GLY
95
n
95
GLY
95
A
VAL
96
n
96
VAL
96
A
THR
97
n
97
THR
97
A
ALA
98
n
98
ALA
98
A
ALA
99
n
99
ALA
99
A
ASP
100
n
100
ASP
100
A
GLU
101
n
101
GLU
101
A
GLU
102
n
102
GLU
102
A
VAL
103
n
103
VAL
103
A
ALA
104
n
104
ALA
104
A
LYS
105
n
105
LYS
105
A
ILE
106
n
106
ILE
106
A
LEU
107
n
107
LEU
107
A
TYR
108
n
108
TYR
108
A
ARG
109
n
109
ARG
109
A
THR
110
n
110
THR
110
A
LYS
111
n
111
LYS
111
A
LYS
112
n
112
LYS
112
A
PRO
113
n
113
PRO
113
A
VAL
114
n
114
VAL
114
A
VAL
115
n
115
VAL
115
A
LEU
116
n
116
LEU
116
A
ALA
117
n
117
ALA
117
A
VAL
118
n
118
VAL
118
A
ASN
119
n
119
ASN
119
A
LYS
120
n
120
LYS
120
A
LEU
121
n
121
LEU
121
A
ASP
122
n
122
ASP
122
A
ASN
123
n
123
ASN
123
A
n
124
124
A
n
125
125
A
n
126
126
A
n
127
127
A
n
128
128
A
ASN
129
n
129
ASN
129
A
ILE
130
n
130
ILE
130
A
TYR
131
n
131
TYR
131
A
ASP
132
n
132
ASP
132
A
PHE
133
n
133
PHE
133
A
TYR
134
n
134
TYR
134
A
SER
135
n
135
SER
135
A
LEU
136
n
136
LEU
136
A
GLY
137
n
137
GLY
137
A
PHE
138
n
138
PHE
138
A
GLY
139
n
139
GLY
139
A
GLU
140
n
140
GLU
140
A
PRO
141
n
141
PRO
141
A
TYR
142
n
142
TYR
142
A
PRO
143
n
143
PRO
143
A
ILE
144
n
144
ILE
144
A
SER
145
n
145
SER
145
A
GLY
146
n
146
GLY
146
A
THR
147
n
147
THR
147
A
HIS
148
n
148
HIS
148
A
GLY
149
n
149
GLY
149
A
LEU
150
n
150
LEU
150
A
GLY
151
n
151
GLY
151
A
LEU
152
n
152
LEU
152
A
GLY
153
n
153
GLY
153
A
ASP
154
n
154
ASP
154
A
LEU
155
n
155
LEU
155
A
LEU
156
n
156
LEU
156
A
ASP
157
n
157
ASP
157
A
ALA
158
n
158
ALA
158
A
VAL
159
n
159
VAL
159
A
ALA
160
n
160
ALA
160
A
GLU
161
n
161
GLU
161
A
HIS
162
n
162
HIS
162
A
PHE
163
n
163
PHE
163
A
LYS
164
n
164
LYS
164
A
ASN
165
n
165
ASN
165
A
ILE
166
n
166
ILE
166
A
PRO
167
n
167
PRO
167
A
GLU
168
n
168
GLU
168
A
THR
169
n
169
THR
169
A
LYS
170
n
170
LYS
170
A
TYR
171
n
171
TYR
171
A
ASN
172
n
172
ASN
172
A
GLU
173
n
173
GLU
173
A
GLU
174
n
174
GLU
174
A
VAL
175
n
175
VAL
175
A
ILE
176
n
176
ILE
176
A
GLN
177
n
177
GLN
177
A
PHE
178
n
178
PHE
178
A
CYS
179
n
179
CYS
179
A
LEU
180
n
180
LEU
180
A
ILE
181
n
181
ILE
181
A
GLY
182
n
182
GLY
182
A
ARG
183
n
183
ARG
183
A
PRO
184
n
184
PRO
184
A
ASN
185
n
185
ASN
185
A
VAL
186
n
186
VAL
186
A
GLY
187
n
187
GLY
187
A
LYS
188
n
188
LYS
188
A
SER
189
n
189
SER
189
A
SER
190
n
190
SER
190
A
LEU
191
n
191
LEU
191
A
VAL
192
n
192
VAL
192
A
ASN
193
n
193
ASN
193
A
ALA
194
n
194
ALA
194
A
MSE
195
n
195
MSE
195
A
LEU
196
n
196
LEU
196
A
GLY
197
n
197
GLY
197
A
GLU
198
n
198
GLU
198
A
GLU
199
n
199
GLU
199
A
ARG
200
n
200
ARG
200
A
VAL
201
n
201
VAL
201
A
ILE
202
n
202
ILE
202
A
VAL
203
n
203
VAL
203
A
SER
204
n
204
SER
204
A
n
205
205
A
n
206
206
A
n
207
207
A
n
208
208
A
n
209
209
A
n
210
210
A
n
211
211
A
n
212
212
A
n
213
213
A
VAL
214
n
214
VAL
214
A
ASP
215
n
215
ASP
215
A
THR
216
n
216
THR
216
A
SER
217
n
217
SER
217
A
PHE
218
n
218
PHE
218
A
THR
219
n
219
THR
219
A
TYR
220
n
220
TYR
220
A
ASN
221
n
221
ASN
221
A
GLN
222
n
222
GLN
222
A
GLN
223
n
223
GLN
223
A
GLU
224
n
224
GLU
224
A
PHE
225
n
225
PHE
225
A
VAL
226
n
226
VAL
226
A
ILE
227
n
227
ILE
227
A
VAL
228
n
228
VAL
228
A
ASP
229
n
229
ASP
229
A
THR
230
n
230
THR
230
A
ALA
231
n
231
ALA
231
A
GLY
232
n
232
GLY
232
A
MSE
233
n
233
MSE
233
A
ARG
234
n
234
ARG
234
A
LYS
235
n
235
LYS
235
A
LYS
236
n
236
LYS
236
A
GLY
237
n
237
GLY
237
A
LYS
238
n
238
LYS
238
A
VAL
239
n
239
VAL
239
A
TYR
240
n
240
TYR
240
A
GLU
241
n
241
GLU
241
A
THR
242
n
242
THR
242
A
THR
243
n
243
THR
243
A
GLU
244
n
244
GLU
244
A
LYS
245
n
245
LYS
245
A
TYR
246
n
246
TYR
246
A
SER
247
n
247
SER
247
A
VAL
248
n
248
VAL
248
A
LEU
249
n
249
LEU
249
A
ARG
250
n
250
ARG
250
A
ALA
251
n
251
ALA
251
A
LEU
252
n
252
LEU
252
A
LYS
253
n
253
LYS
253
A
ALA
254
n
254
ALA
254
A
ILE
255
n
255
ILE
255
A
ASP
256
n
256
ASP
256
A
ARG
257
n
257
ARG
257
A
SER
258
n
258
SER
258
A
GLU
259
n
259
GLU
259
A
VAL
260
n
260
VAL
260
A
VAL
261
n
261
VAL
261
A
ALA
262
n
262
ALA
262
A
VAL
263
n
263
VAL
263
A
VAL
264
n
264
VAL
264
A
LEU
265
n
265
LEU
265
A
ASP
266
n
266
ASP
266
A
GLY
267
n
267
GLY
267
A
GLU
268
n
268
GLU
268
A
GLU
269
n
269
GLU
269
A
GLY
270
n
270
GLY
270
A
ILE
271
n
271
ILE
271
A
ILE
272
n
272
ILE
272
A
GLU
273
n
273
GLU
273
A
GLN
274
n
274
GLN
274
A
ASP
275
n
275
ASP
275
A
LYS
276
n
276
LYS
276
A
ARG
277
n
277
ARG
277
A
ILE
278
n
278
ILE
278
A
ALA
279
n
279
ALA
279
A
GLY
280
n
280
GLY
280
A
TYR
281
n
281
TYR
281
A
ALA
282
n
282
ALA
282
A
HIS
283
n
283
HIS
283
A
GLU
284
n
284
GLU
284
A
ALA
285
n
285
ALA
285
A
GLY
286
n
286
GLY
286
A
LYS
287
n
287
LYS
287
A
ALA
288
n
288
ALA
288
A
VAL
289
n
289
VAL
289
A
VAL
290
n
290
VAL
290
A
ILE
291
n
291
ILE
291
A
VAL
292
n
292
VAL
292
A
VAL
293
n
293
VAL
293
A
ASN
294
n
294
ASN
294
A
LYS
295
n
295
LYS
295
A
TRP
296
n
296
TRP
296
A
ASP
297
n
297
ASP
297
A
ALA
298
n
298
ALA
298
A
VAL
299
n
299
VAL
299
A
ASP
300
n
300
ASP
300
A
LYS
301
n
301
LYS
301
A
ASP
302
n
302
ASP
302
A
GLU
303
n
303
GLU
303
A
SER
304
n
304
SER
304
A
THR
305
n
305
THR
305
A
MSE
306
n
306
MSE
306
A
LYS
307
n
307
LYS
307
A
GLU
308
n
308
GLU
308
A
PHE
309
n
309
PHE
309
A
GLU
310
n
310
GLU
310
A
GLU
311
n
311
GLU
311
A
ASN
312
n
312
ASN
312
A
ILE
313
n
313
ILE
313
A
ARG
314
n
314
ARG
314
A
ASP
315
n
315
ASP
315
A
HIS
316
n
316
HIS
316
A
PHE
317
n
317
PHE
317
A
GLN
318
n
318
GLN
318
A
PHE
319
n
319
PHE
319
A
LEU
320
n
320
LEU
320
A
ASP
321
n
321
ASP
321
A
TYR
322
n
322
TYR
322
A
ALA
323
n
323
ALA
323
A
PRO
324
n
324
PRO
324
A
ILE
325
n
325
ILE
325
A
LEU
326
n
326
LEU
326
A
PHE
327
n
327
PHE
327
A
MSE
328
n
328
MSE
328
A
SER
329
n
329
SER
329
A
ALA
330
n
330
ALA
330
A
LEU
331
n
331
LEU
331
A
THR
332
n
332
THR
332
A
LYS
333
n
333
LYS
333
A
LYS
334
n
334
LYS
334
A
ARG
335
n
335
ARG
335
A
ILE
336
n
336
ILE
336
A
HIS
337
n
337
HIS
337
A
THR
338
n
338
THR
338
A
LEU
339
n
339
LEU
339
A
MSE
340
n
340
MSE
340
A
PRO
341
n
341
PRO
341
A
ALA
342
n
342
ALA
342
A
ILE
343
n
343
ILE
343
A
ILE
344
n
344
ILE
344
A
LYS
345
n
345
LYS
345
A
ALA
346
n
346
ALA
346
A
SER
347
n
347
SER
347
A
GLU
348
n
348
GLU
348
A
ASN
349
n
349
ASN
349
A
HIS
350
n
350
HIS
350
A
SER
351
n
351
SER
351
A
LEU
352
n
352
LEU
352
A
ARG
353
n
353
ARG
353
A
VAL
354
n
354
VAL
354
A
GLN
355
n
355
GLN
355
A
THR
356
n
356
THR
356
A
ASN
357
n
357
ASN
357
A
VAL
358
n
358
VAL
358
A
LEU
359
n
359
LEU
359
A
ASN
360
n
360
ASN
360
A
ASP
361
n
361
ASP
361
A
VAL
362
n
362
VAL
362
A
ILE
363
n
363
ILE
363
A
MSE
364
n
364
MSE
364
A
ASP
365
n
365
ASP
365
A
ALA
366
n
366
ALA
366
A
VAL
367
n
367
VAL
367
A
ALA
368
n
368
ALA
368
A
MSE
369
n
369
MSE
369
A
ASN
370
n
370
ASN
370
A
PRO
371
n
371
PRO
371
A
THR
372
n
372
THR
372
A
PRO
373
n
373
PRO
373
A
THR
374
n
374
THR
374
A
HIS
375
n
375
HIS
375
A
ASN
376
n
376
ASN
376
A
GLY
377
n
377
GLY
377
A
SER
378
n
378
SER
378
A
ARG
379
n
379
ARG
379
A
LEU
380
n
380
LEU
380
A
LYS
381
n
381
LYS
381
A
ILE
382
n
382
ILE
382
A
TYR
383
n
383
TYR
383
A
TYR
384
n
384
TYR
384
A
ALA
385
n
385
ALA
385
A
THR
386
n
386
THR
386
A
GLN
387
n
387
GLN
387
A
VAL
388
n
388
VAL
388
A
SER
389
n
389
SER
389
A
VAL
390
n
390
VAL
390
A
LYS
391
n
391
LYS
391
A
PRO
392
n
392
PRO
392
A
PRO
393
n
393
PRO
393
A
SER
394
n
394
SER
394
A
PHE
395
n
395
PHE
395
A
VAL
396
n
396
VAL
396
A
VAL
397
n
397
VAL
397
A
PHE
398
n
398
PHE
398
A
VAL
399
n
399
VAL
399
A
ASN
400
n
400
ASN
400
A
ASP
401
n
401
ASP
401
A
PRO
402
n
402
PRO
402
A
GLU
403
n
403
GLU
403
A
LEU
404
n
404
LEU
404
A
MSE
405
n
405
MSE
405
A
HIS
406
n
406
HIS
406
A
PHE
407
n
407
PHE
407
A
SER
408
n
408
SER
408
A
TYR
409
n
409
TYR
409
A
GLU
410
n
410
GLU
410
A
ARG
411
n
411
ARG
411
A
PHE
412
n
412
PHE
412
A
LEU
413
n
413
LEU
413
A
GLU
414
n
414
GLU
414
A
ASN
415
n
415
ASN
415
A
ARG
416
n
416
ARG
416
A
ILE
417
n
417
ILE
417
A
ARG
418
n
418
ARG
418
A
ASP
419
n
419
ASP
419
A
ALA
420
n
420
ALA
420
A
PHE
421
n
421
PHE
421
A
GLY
422
n
422
GLY
422
A
PHE
423
n
423
PHE
423
A
GLU
424
n
424
GLU
424
A
GLY
425
n
425
GLY
425
A
THR
426
n
426
THR
426
A
PRO
427
n
427
PRO
427
A
ILE
428
n
428
ILE
428
A
LYS
429
n
429
LYS
429
A
ILE
430
n
430
ILE
430
A
PHE
431
n
431
PHE
431
A
ALA
432
n
432
ALA
432
A
ARG
433
n
433
ARG
433
A
ALA
434
n
434
ALA
434
A
ARG
435
n
435
ARG
435
A
LYS
436
n
436
LYS
436
A
author_defined_assembly
1
monomeric
A
HIS
406
A
NE2
HIS
406
1_555
A
ZN
900
B
ZN
ZN
1_555
A
HIS
375
A
ND1
HIS
375
1_555
95.8
A
HIS
406
A
NE2
HIS
406
1_555
A
ZN
900
B
ZN
ZN
1_555
A
GLU
311
A
OE1
GLU
311
4_466
100.6
A
HIS
375
A
ND1
HIS
375
1_555
A
ZN
900
B
ZN
ZN
1_555
A
GLU
311
A
OE1
GLU
311
4_466
142.4
A
MSE
80
SELENOMETHIONINE
A
MSE
80
MET
A
MSE
89
SELENOMETHIONINE
A
MSE
89
MET
A
MSE
195
SELENOMETHIONINE
A
MSE
195
MET
A
MSE
233
SELENOMETHIONINE
A
MSE
233
MET
A
MSE
306
SELENOMETHIONINE
A
MSE
306
MET
A
MSE
328
SELENOMETHIONINE
A
MSE
328
MET
A
MSE
340
SELENOMETHIONINE
A
MSE
340
MET
A
MSE
364
SELENOMETHIONINE
A
MSE
364
MET
A
MSE
369
SELENOMETHIONINE
A
MSE
369
MET
A
MSE
405
SELENOMETHIONINE
A
MSE
405
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
25
A
N
GLY
25
A
O
SER
44
A
O
SER
44
A
N
TYR
43
A
N
TYR
43
A
O
LEU
55
A
O
LEU
55
A
O
ASN
54
A
O
ASN
54
A
N
VAL
6
A
N
VAL
6
A
N
ALA
7
A
N
ALA
7
A
O
ILE
87
A
O
ILE
87
A
N
PHE
88
A
N
PHE
88
A
O
ALA
117
A
O
ALA
117
A
N
LEU
116
A
N
LEU
116
A
O
TYR
142
A
O
TYR
142
A
N
ILE
202
A
N
ILE
202
A
O
THR
219
A
O
THR
219
A
N
PHE
218
A
N
PHE
218
A
O
PHE
225
A
O
PHE
225
A
O
VAL
226
A
O
VAL
226
A
N
PHE
178
A
N
PHE
178
A
N
CYS
179
A
N
CYS
179
A
O
ALA
262
A
O
ALA
262
A
N
LEU
265
A
N
LEU
265
A
O
VAL
292
A
O
VAL
292
A
N
VAL
293
A
N
VAL
293
A
O
LEU
326
A
O
LEU
326
A
N
HIS
375
A
N
HIS
375
A
O
SER
378
A
O
SER
378
A
N
TYR
383
A
N
TYR
383
A
O
PHE
398
A
O
PHE
398
A
N
VAL
397
A
N
VAL
397
A
O
PHE
431
A
O
PHE
431
1
A
CD
GLU
26
A
CD
GLU
26
1
Y
1
A
OE1
GLU
26
A
OE1
GLU
26
1
Y
1
A
OE2
GLU
26
A
OE2
GLU
26
1
Y
1
A
CG
ARG
73
A
CG
ARG
73
1
Y
1
A
CD
ARG
73
A
CD
ARG
73
1
Y
1
A
NE
ARG
73
A
NE
ARG
73
1
Y
1
A
CZ
ARG
73
A
CZ
ARG
73
1
Y
1
A
NH1
ARG
73
A
NH1
ARG
73
1
Y
1
A
NH2
ARG
73
A
NH2
ARG
73
1
Y
1
A
NH1
ARG
93
A
NH1
ARG
93
1
Y
1
A
NH2
ARG
93
A
NH2
ARG
93
1
Y
1
A
CG
ASN
129
A
CG
ASN
129
1
Y
1
A
OD1
ASN
129
A
OD1
ASN
129
1
Y
1
A
ND2
ASN
129
A
ND2
ASN
129
1
Y
1
A
CE
LYS
253
A
CE
LYS
253
1
Y
1
A
NZ
LYS
253
A
NZ
LYS
253
1
Y
1
A
CD
ARG
277
A
CD
ARG
277
1
Y
1
A
NE
ARG
277
A
NE
ARG
277
1
Y
1
A
CZ
ARG
277
A
CZ
ARG
277
1
Y
1
A
NH1
ARG
277
A
NH1
ARG
277
1
Y
1
A
NH2
ARG
277
A
NH2
ARG
277
1
Y
1
A
CD
LYS
345
A
CD
LYS
345
1
Y
1
A
CE
LYS
345
A
CE
LYS
345
1
Y
1
A
NZ
LYS
345
A
NZ
LYS
345
1
Y
1
A
NE
ARG
411
A
NE
ARG
411
1
Y
1
A
CZ
ARG
411
A
CZ
ARG
411
1
Y
1
A
NH1
ARG
411
A
NH1
ARG
411
1
Y
1
A
NH2
ARG
411
A
NH2
ARG
411
1
Y
1
A
CD
LYS
429
A
CD
LYS
429
1
Y
1
A
CE
LYS
429
A
CE
LYS
429
1
Y
1
A
NZ
LYS
429
A
NZ
LYS
429
1
Y
1
A
MSE
1
A
MSE
1
1
Y
1
A
GLY
2
A
GLY
2
1
Y
1
A
ILE
30
A
ILE
30
1
Y
1
A
VAL
31
A
VAL
31
1
Y
1
A
GLU
32
A
GLU
32
1
Y
1
A
ASP
33
A
ASP
33
1
Y
1
A
THR
34
A
THR
34
1
Y
1
A
PRO
35
A
PRO
35
1
Y
1
A
GLY
36
A
GLY
36
1
Y
1
A
VAL
37
A
VAL
37
1
Y
1
A
THR
38
A
THR
38
1
Y
1
A
ARG
39
A
ARG
39
1
Y
1
A
ASP
40
A
ASP
40
1
Y
1
A
THR
58
A
THR
58
1
Y
1
A
GLY
59
A
GLY
59
1
Y
1
A
GLY
60
A
GLY
60
1
Y
1
A
ILE
61
A
ILE
61
1
Y
1
A
ASP
62
A
ASP
62
1
Y
1
A
ILE
63
A
ILE
63
1
Y
1
A
GLY
64
A
GLY
64
1
Y
1
A
ASP
65
A
ASP
65
1
Y
1
A
GLU
66
A
GLU
66
1
Y
1
A
THR
124
A
THR
124
1
Y
1
A
GLU
125
A
GLU
125
1
Y
1
A
MSE
126
A
MSE
126
1
Y
1
A
ARG
127
A
ARG
127
1
Y
1
A
ALA
128
A
ALA
128
1
Y
1
A
ASN
205
A
ASN
205
1
Y
1
A
VAL
206
A
VAL
206
1
Y
1
A
ALA
207
A
ALA
207
1
Y
1
A
GLY
208
A
GLY
208
1
Y
1
A
THR
209
A
THR
209
1
Y
1
A
THR
210
A
THR
210
1
Y
1
A
ARG
211
A
ARG
211
1
Y
1
A
ASP
212
A
ASP
212
1
Y
1
A
ALA
213
A
ALA
213
1
Y
1
A
A
ASP
ASN
122
123
148.65
1
A
A
ARG
LYS
435
436
73.92
1
11.98
1.60
122.70
134.68
A
A
A
O
C
N
TYR
TYR
ASP
131
131
132
Y
1
A
ASN
13
81.86
27.82
1
A
ASN
50
-85.21
30.02
1
A
PHE
68
-73.05
-80.51
1
A
TYR
131
-106.44
-85.90
1
A
ASP
132
-115.76
50.46
1
A
GLN
222
72.03
-5.33
1
A
ASP
300
-69.61
82.46
1
A
PHE
317
-117.76
64.72
41.463
-2.29
0.00
0.00
-0.61
0.00
2.89
0.932
0.895
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.27353
0.21539
0.21815
2.50
19.96
814
15364
5.0
100.00
22.068
0.232
RANDOM
1
Isotropic
THROUGHOUT
MAD
0.633
0.319
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
2.50
19.96
31
3235
57
0
3147
0.010
0.022
3266
0.006
0.020
2974
1.251
1.977
4431
0.766
3.000
6902
12.283
5.000
395
33.420
24.459
148
16.346
15.000
554
19.100
15.000
19
0.071
0.200
502
0.004
0.020
3573
0.002
0.020
655
0.202
0.200
670
0.196
0.200
2930
0.179
0.200
1593
0.083
0.200
1768
0.143
0.200
74
0.089
0.200
1
0.093
0.200
9
0.249
0.200
50
0.179
0.200
8
1.296
1.500
2132
0.062
1.500
809
0.816
2.000
3221
1.863
3.000
1414
2.644
4.500
1210
0.319
0.254
2.564
67
1076
20
100.00
2.5
30.0
2HJG
16253
2.0
2.0
0.098
1
17.8
6.8
99.9
0.32
2.5
2.65
5.1
6.8
99
refinement
REFMAC
5.2.0005
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
SOLVE
GTP-binding protein engA
The crystal structure of the B. subtilis YphC GTPase in complex with GDP
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
The biological assembly is a monomer
A
GLY
15
A
GLY
15
HELX_P
A
ILE
23
A
ILE
23
1
1
9
A
PRO
67
A
PRO
67
HELX_P
A
ALA
83
A
ALA
83
1
2
17
A
THR
97
A
THR
97
HELX_P
A
TYR
108
A
TYR
108
1
3
12
A
PHE
133
A
PHE
133
HELX_P
A
GLY
137
A
GLY
137
5
4
5
A
GLY
151
A
GLY
151
HELX_P
A
HIS
162
A
HIS
162
1
5
12
A
PHE
163
A
PHE
163
HELX_P
A
ILE
166
A
ILE
166
5
6
4
A
GLY
187
A
GLY
187
HELX_P
A
GLY
197
A
GLY
197
1
7
11
A
ASP
229
A
ASP
229
HELX_P
A
ARG
234
A
ARG
234
1
8
6
A
GLU
244
A
GLU
244
HELX_P
A
SER
258
A
SER
258
1
9
15
A
ILE
272
A
ILE
272
HELX_P
A
ALA
285
A
ALA
285
1
10
14
A
LYS
295
A
LYS
295
HELX_P
A
VAL
299
A
VAL
299
5
11
5
A
SER
304
A
SER
304
HELX_P
A
PHE
317
A
PHE
317
1
12
14
A
GLN
318
A
GLN
318
HELX_P
A
ASP
321
A
ASP
321
5
13
4
A
ARG
335
A
ARG
335
HELX_P
A
HIS
337
A
HIS
337
5
14
3
A
THR
338
A
THR
338
HELX_P
A
SER
351
A
SER
351
1
15
14
A
GLN
355
A
GLN
355
HELX_P
A
ASN
370
A
ASN
370
1
16
16
A
ASP
401
A
ASP
401
HELX_P
A
MSE
405
A
MSE
405
5
17
5
A
HIS
406
A
HIS
406
HELX_P
A
GLY
422
A
GLY
422
1
18
17
covale
1.327
A
ALA
79
A
C
ALA
79
1_555
A
MSE
80
A
N
MSE
80
1_555
covale
1.331
A
MSE
80
A
C
MSE
80
1_555
A
ASP
81
A
N
ASP
81
1_555
covale
1.329
A
PHE
88
A
C
PHE
88
1_555
A
MSE
89
A
N
MSE
89
1_555
covale
1.328
A
MSE
89
A
C
MSE
89
1_555
A
VAL
90
A
N
VAL
90
1_555
covale
1.324
A
ALA
194
A
C
ALA
194
1_555
A
MSE
195
A
N
MSE
195
1_555
covale
1.330
A
MSE
195
A
C
MSE
195
1_555
A
LEU
196
A
N
LEU
196
1_555
covale
1.327
A
GLY
232
A
C
GLY
232
1_555
A
MSE
233
A
N
MSE
233
1_555
covale
1.330
A
MSE
233
A
C
MSE
233
1_555
A
ARG
234
A
N
ARG
234
1_555
covale
1.329
A
THR
305
A
C
THR
305
1_555
A
MSE
306
A
N
MSE
306
1_555
covale
1.328
A
MSE
306
A
C
MSE
306
1_555
A
LYS
307
A
N
LYS
307
1_555
covale
1.332
A
PHE
327
A
C
PHE
327
1_555
A
MSE
328
A
N
MSE
328
1_555
covale
1.329
A
MSE
328
A
C
MSE
328
1_555
A
SER
329
A
N
SER
329
1_555
covale
1.329
A
LEU
339
A
C
LEU
339
1_555
A
MSE
340
A
N
MSE
340
1_555
covale
1.335
A
MSE
340
A
C
MSE
340
1_555
A
PRO
341
A
N
PRO
341
1_555
covale
1.328
A
ILE
363
A
C
ILE
363
1_555
A
MSE
364
A
N
MSE
364
1_555
covale
1.328
A
MSE
364
A
C
MSE
364
1_555
A
ASP
365
A
N
ASP
365
1_555
covale
1.336
A
ALA
368
A
C
ALA
368
1_555
A
MSE
369
A
N
MSE
369
1_555
covale
1.328
A
MSE
369
A
C
MSE
369
1_555
A
ASN
370
A
N
ASN
370
1_555
covale
1.326
A
LEU
404
A
C
LEU
404
1_555
A
MSE
405
A
N
MSE
405
1_555
covale
1.324
A
MSE
405
A
C
MSE
405
1_555
A
HIS
406
A
N
HIS
406
1_555
metalc
1.971
A
ZN
900
B
ZN
ZN
1_555
A
HIS
406
A
NE2
HIS
406
1_555
metalc
2.088
A
ZN
900
B
ZN
ZN
1_555
A
HIS
375
A
ND1
HIS
375
1_555
metalc
2.194
A
ZN
900
B
ZN
ZN
1_555
A
GLU
311
A
OE1
GLU
311
4_466
HYDROLASE
GTPase EngA KH-domain, HYDROLASE
A
LYS
391
A
LYS
391
1
A
PRO
392
A
PRO
392
-0.45
ENGA_BACSU
UNP
1
1
P50743
MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM
DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVA
EHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVY
ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL
DYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVN
DPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK
1
436
2HJG
1
436
P50743
A
1
1
436
1
MET
MODIFIED RESIDUE
MSE
1
2HJG
A
P50743
UNP
1
1
1
MET
MODIFIED RESIDUE
MSE
80
2HJG
A
P50743
UNP
80
80
1
MET
MODIFIED RESIDUE
MSE
89
2HJG
A
P50743
UNP
89
89
1
MET
MODIFIED RESIDUE
MSE
126
2HJG
A
P50743
UNP
126
126
1
MET
MODIFIED RESIDUE
MSE
195
2HJG
A
P50743
UNP
195
195
1
MET
MODIFIED RESIDUE
MSE
233
2HJG
A
P50743
UNP
233
233
1
MET
MODIFIED RESIDUE
MSE
306
2HJG
A
P50743
UNP
306
306
1
MET
MODIFIED RESIDUE
MSE
328
2HJG
A
P50743
UNP
328
328
1
MET
MODIFIED RESIDUE
MSE
340
2HJG
A
P50743
UNP
340
340
1
MET
MODIFIED RESIDUE
MSE
364
2HJG
A
P50743
UNP
364
364
1
MET
MODIFIED RESIDUE
MSE
369
2HJG
A
P50743
UNP
369
369
1
MET
MODIFIED RESIDUE
MSE
405
2HJG
A
P50743
UNP
405
405
7
7
2
3
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
A
ALA
24
A
ALA
24
A
ARG
27
A
ARG
27
A
ILE
42
A
ILE
42
A
SER
45
A
SER
45
A
ASN
54
A
ASN
54
A
ILE
56
A
ILE
56
A
VAL
5
A
VAL
5
A
VAL
9
A
VAL
9
A
VAL
85
A
VAL
85
A
ASN
91
A
ASN
91
A
VAL
114
A
VAL
114
A
ASN
119
A
ASN
119
A
TYR
142
A
TYR
142
A
PRO
143
A
PRO
143
A
VAL
201
A
VAL
201
A
VAL
203
A
VAL
203
A
THR
216
A
THR
216
A
TYR
220
A
TYR
220
A
GLN
223
A
GLN
223
A
ILE
227
A
ILE
227
A
ILE
176
A
ILE
176
A
ILE
181
A
ILE
181
A
VAL
260
A
VAL
260
A
ASP
266
A
ASP
266
A
ALA
288
A
ALA
288
A
ASN
294
A
ASN
294
A
ILE
325
A
ILE
325
A
PHE
327
A
PHE
327
A
THR
374
A
THR
374
A
HIS
375
A
HIS
375
A
SER
378
A
SER
378
A
ARG
379
A
ARG
379
A
ILE
382
A
ILE
382
A
SER
389
A
SER
389
A
SER
394
A
SER
394
A
VAL
399
A
VAL
399
A
LYS
429
A
LYS
429
A
ALA
434
A
ALA
434
BINDING SITE FOR RESIDUE ZN A 900
Software
3
BINDING SITE FOR RESIDUE GDP A 500
Software
15
BINDING SITE FOR RESIDUE GDP A 800
Software
13
A
GLU
311
A
GLU
311
3
4_466
A
HIS
375
A
HIS
375
3
1_555
A
HIS
406
A
HIS
406
3
1_555
A
ASN
185
A
ASN
185
15
1_555
A
VAL
186
A
VAL
186
15
1_555
A
GLY
187
A
GLY
187
15
1_555
A
LYS
188
A
LYS
188
15
1_555
A
SER
189
A
SER
189
15
1_555
A
SER
190
A
SER
190
15
1_555
A
LYS
236
A
LYS
236
15
1_555
A
ASN
294
A
ASN
294
15
1_555
A
LYS
295
A
LYS
295
15
1_555
A
ASP
297
A
ASP
297
15
1_555
A
SER
329
A
SER
329
15
1_555
A
ALA
330
A
ALA
330
15
1_555
A
LEU
331
A
LEU
331
15
1_555
A
ARG
435
A
ARG
435
15
1_655
A
LYS
436
A
LYS
436
15
1_655
A
PRO
12
A
PRO
12
13
1_555
A
ASN
13
A
ASN
13
13
1_555
A
VAL
14
A
VAL
14
13
1_555
A
GLY
15
A
GLY
15
13
1_555
A
LYS
16
A
LYS
16
13
1_555
A
SER
17
A
SER
17
13
1_555
A
THR
18
A
THR
18
13
1_555
A
ASN
119
A
ASN
119
13
1_555
A
LYS
120
A
LYS
120
13
1_555
A
ASP
122
A
ASP
122
13
1_555
A
SER
145
A
SER
145
13
1_555
A
GLY
146
A
GLY
146
13
1_555
A
THR
147
A
THR
147
13
1_555
19
P 21 21 21