0.015946 0.000000 0.000000 0.000000 0.015374 0.000000 0.000000 0.000000 0.009041 0.00000 0.00000 0.00000 Muench, S.P. Xu, L. Sedelnikova, S.E. Rice, D.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 62.711 65.045 110.610 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H15 N5 O11 P2 443.201 n GUANOSINE-5'-DIPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Proc.Natl.Acad.Sci.Usa PNASA6 0040 0027-8424 103 12359 12364 10.1073/pnas.0602585103 16894162 The essential GTPase YphC displays a major domain rearrangement associated with nucleotide binding. 2006 DK Acta Crystallogr.,Sect.F 1744-3091 62 435 437 10.1107/S1744309106011456 16682769 Cloning, purification and preliminary crystallographic analysis of the Bacillus subtilis GTPase YphC-GDP complex. 2006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2005-06-27 MAR CCD 165 mm double crystal Si(III)monochromator MAD M x-ray 1 0.9794 1.0 0.9797 1.0 1.0094 1.0 PX10.1 SRS 0.9794, 0.9797, 1.0094 SYNCHROTRON SRS BEAMLINE PX10.1 49391.242 GTP-binding protein engA 1 man polymer 65.409 ZINC ION 1 syn non-polymer 443.201 GUANOSINE-5'-DIPHOSPHATE 2 syn non-polymer 18.015 water 31 nat water no yes (MSE)GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA EIA(MSE)DEADVIIF(MSE)VNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE(MSE)RANIYDFYSLGFGEPYPI SGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNA(MSE)LGEERVIVSNVAGTTRDAVDTSFTY NQQEFVIVDTAG(MSE)RKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKW DAVDKDEST(MSE)KEFEENIRDHFQFLDYAPILF(MSE)SALTKKRIHTL(MSE)PAIIKASENHSLRVQTNVLNDVI (MSE)DAVA(MSE)NPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPEL(MSE)HFSYERFLENRIRDAFGFEGTPIKIF ARARK MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVA EHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVY ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL DYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVN DPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bacillus 168 Escherichia sample engA 1423 Bacillus subtilis 562 Escherichia coli E. coli Tuner (DE3) peTBLUE-1 pMAT1 1 2.28 46.12 VAPOR DIFFUSION, HANGING DROP 8.0 0.2M sodium flouride, 20% (w/v) PEG3350, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K 290 audit_author repository Initial release Version format compliance Version format compliance Structure summary 1 0 2006-08-08 1 1 2008-05-01 1 2 2011-07-13 1 3 2018-01-24 _audit_author.name Structural analysis of the domain interactions in Der, a switch protein containing two GTPase domains RCSB Y RCSB 2006-06-30 REL REL ZN ZINC ION GDP GUANOSINE-5'-DIPHOSPHATE HOH water ZN 900 2 ZN ZN 900 A GDP 500 3 GDP GDP 500 A GDP 800 3 GDP GDP 800 A HOH 1 4 HOH HOH 901 A HOH 2 4 HOH HOH 902 A HOH 3 4 HOH HOH 903 A HOH 4 4 HOH HOH 904 A HOH 5 4 HOH HOH 905 A HOH 6 4 HOH HOH 906 A HOH 7 4 HOH HOH 907 A HOH 8 4 HOH HOH 908 A HOH 9 4 HOH HOH 909 A HOH 10 4 HOH HOH 910 A HOH 11 4 HOH HOH 911 A HOH 12 4 HOH HOH 912 A HOH 13 4 HOH HOH 913 A HOH 15 4 HOH HOH 914 A HOH 16 4 HOH HOH 915 A HOH 17 4 HOH HOH 916 A HOH 18 4 HOH HOH 917 A HOH 19 4 HOH HOH 918 A HOH 20 4 HOH HOH 919 A HOH 21 4 HOH HOH 920 A HOH 22 4 HOH HOH 921 A HOH 23 4 HOH HOH 922 A HOH 24 4 HOH HOH 923 A HOH 25 4 HOH HOH 924 A HOH 26 4 HOH HOH 925 A HOH 27 4 HOH HOH 926 A HOH 28 4 HOH HOH 927 A HOH 29 4 HOH HOH 928 A HOH 30 4 HOH HOH 929 A HOH 31 4 HOH HOH 930 A HOH 32 4 HOH HOH 931 A n 1 1 A n 2 2 A LYS 3 n 3 LYS 3 A PRO 4 n 4 PRO 4 A VAL 5 n 5 VAL 5 A VAL 6 n 6 VAL 6 A ALA 7 n 7 ALA 7 A ILE 8 n 8 ILE 8 A VAL 9 n 9 VAL 9 A GLY 10 n 10 GLY 10 A ARG 11 n 11 ARG 11 A PRO 12 n 12 PRO 12 A ASN 13 n 13 ASN 13 A VAL 14 n 14 VAL 14 A GLY 15 n 15 GLY 15 A LYS 16 n 16 LYS 16 A SER 17 n 17 SER 17 A THR 18 n 18 THR 18 A ILE 19 n 19 ILE 19 A PHE 20 n 20 PHE 20 A ASN 21 n 21 ASN 21 A ARG 22 n 22 ARG 22 A ILE 23 n 23 ILE 23 A ALA 24 n 24 ALA 24 A GLY 25 n 25 GLY 25 A GLU 26 n 26 GLU 26 A ARG 27 n 27 ARG 27 A ILE 28 n 28 ILE 28 A SER 29 n 29 SER 29 A n 30 30 A n 31 31 A n 32 32 A n 33 33 A n 34 34 A n 35 35 A n 36 36 A n 37 37 A n 38 38 A n 39 39 A n 40 40 A ARG 41 n 41 ARG 41 A ILE 42 n 42 ILE 42 A TYR 43 n 43 TYR 43 A SER 44 n 44 SER 44 A SER 45 n 45 SER 45 A ALA 46 n 46 ALA 46 A GLU 47 n 47 GLU 47 A TRP 48 n 48 TRP 48 A LEU 49 n 49 LEU 49 A ASN 50 n 50 ASN 50 A TYR 51 n 51 TYR 51 A ASP 52 n 52 ASP 52 A PHE 53 n 53 PHE 53 A ASN 54 n 54 ASN 54 A LEU 55 n 55 LEU 55 A ILE 56 n 56 ILE 56 A ASP 57 n 57 ASP 57 A n 58 58 A n 59 59 A n 60 60 A n 61 61 A n 62 62 A n 63 63 A n 64 64 A n 65 65 A n 66 66 A PRO 67 n 67 PRO 67 A PHE 68 n 68 PHE 68 A LEU 69 n 69 LEU 69 A ALA 70 n 70 ALA 70 A GLN 71 n 71 GLN 71 A ILE 72 n 72 ILE 72 A ARG 73 n 73 ARG 73 A GLN 74 n 74 GLN 74 A GLN 75 n 75 GLN 75 A ALA 76 n 76 ALA 76 A GLU 77 n 77 GLU 77 A ILE 78 n 78 ILE 78 A ALA 79 n 79 ALA 79 A MSE 80 n 80 MSE 80 A ASP 81 n 81 ASP 81 A GLU 82 n 82 GLU 82 A ALA 83 n 83 ALA 83 A ASP 84 n 84 ASP 84 A VAL 85 n 85 VAL 85 A ILE 86 n 86 ILE 86 A ILE 87 n 87 ILE 87 A PHE 88 n 88 PHE 88 A MSE 89 n 89 MSE 89 A VAL 90 n 90 VAL 90 A ASN 91 n 91 ASN 91 A GLY 92 n 92 GLY 92 A ARG 93 n 93 ARG 93 A GLU 94 n 94 GLU 94 A GLY 95 n 95 GLY 95 A VAL 96 n 96 VAL 96 A THR 97 n 97 THR 97 A ALA 98 n 98 ALA 98 A ALA 99 n 99 ALA 99 A ASP 100 n 100 ASP 100 A GLU 101 n 101 GLU 101 A GLU 102 n 102 GLU 102 A VAL 103 n 103 VAL 103 A ALA 104 n 104 ALA 104 A LYS 105 n 105 LYS 105 A ILE 106 n 106 ILE 106 A LEU 107 n 107 LEU 107 A TYR 108 n 108 TYR 108 A ARG 109 n 109 ARG 109 A THR 110 n 110 THR 110 A LYS 111 n 111 LYS 111 A LYS 112 n 112 LYS 112 A PRO 113 n 113 PRO 113 A VAL 114 n 114 VAL 114 A VAL 115 n 115 VAL 115 A LEU 116 n 116 LEU 116 A ALA 117 n 117 ALA 117 A VAL 118 n 118 VAL 118 A ASN 119 n 119 ASN 119 A LYS 120 n 120 LYS 120 A LEU 121 n 121 LEU 121 A ASP 122 n 122 ASP 122 A ASN 123 n 123 ASN 123 A n 124 124 A n 125 125 A n 126 126 A n 127 127 A n 128 128 A ASN 129 n 129 ASN 129 A ILE 130 n 130 ILE 130 A TYR 131 n 131 TYR 131 A ASP 132 n 132 ASP 132 A PHE 133 n 133 PHE 133 A TYR 134 n 134 TYR 134 A SER 135 n 135 SER 135 A LEU 136 n 136 LEU 136 A GLY 137 n 137 GLY 137 A PHE 138 n 138 PHE 138 A GLY 139 n 139 GLY 139 A GLU 140 n 140 GLU 140 A PRO 141 n 141 PRO 141 A TYR 142 n 142 TYR 142 A PRO 143 n 143 PRO 143 A ILE 144 n 144 ILE 144 A SER 145 n 145 SER 145 A GLY 146 n 146 GLY 146 A THR 147 n 147 THR 147 A HIS 148 n 148 HIS 148 A GLY 149 n 149 GLY 149 A LEU 150 n 150 LEU 150 A GLY 151 n 151 GLY 151 A LEU 152 n 152 LEU 152 A GLY 153 n 153 GLY 153 A ASP 154 n 154 ASP 154 A LEU 155 n 155 LEU 155 A LEU 156 n 156 LEU 156 A ASP 157 n 157 ASP 157 A ALA 158 n 158 ALA 158 A VAL 159 n 159 VAL 159 A ALA 160 n 160 ALA 160 A GLU 161 n 161 GLU 161 A HIS 162 n 162 HIS 162 A PHE 163 n 163 PHE 163 A LYS 164 n 164 LYS 164 A ASN 165 n 165 ASN 165 A ILE 166 n 166 ILE 166 A PRO 167 n 167 PRO 167 A GLU 168 n 168 GLU 168 A THR 169 n 169 THR 169 A LYS 170 n 170 LYS 170 A TYR 171 n 171 TYR 171 A ASN 172 n 172 ASN 172 A GLU 173 n 173 GLU 173 A GLU 174 n 174 GLU 174 A VAL 175 n 175 VAL 175 A ILE 176 n 176 ILE 176 A GLN 177 n 177 GLN 177 A PHE 178 n 178 PHE 178 A CYS 179 n 179 CYS 179 A LEU 180 n 180 LEU 180 A ILE 181 n 181 ILE 181 A GLY 182 n 182 GLY 182 A ARG 183 n 183 ARG 183 A PRO 184 n 184 PRO 184 A ASN 185 n 185 ASN 185 A VAL 186 n 186 VAL 186 A GLY 187 n 187 GLY 187 A LYS 188 n 188 LYS 188 A SER 189 n 189 SER 189 A SER 190 n 190 SER 190 A LEU 191 n 191 LEU 191 A VAL 192 n 192 VAL 192 A ASN 193 n 193 ASN 193 A ALA 194 n 194 ALA 194 A MSE 195 n 195 MSE 195 A LEU 196 n 196 LEU 196 A GLY 197 n 197 GLY 197 A GLU 198 n 198 GLU 198 A GLU 199 n 199 GLU 199 A ARG 200 n 200 ARG 200 A VAL 201 n 201 VAL 201 A ILE 202 n 202 ILE 202 A VAL 203 n 203 VAL 203 A SER 204 n 204 SER 204 A n 205 205 A n 206 206 A n 207 207 A n 208 208 A n 209 209 A n 210 210 A n 211 211 A n 212 212 A n 213 213 A VAL 214 n 214 VAL 214 A ASP 215 n 215 ASP 215 A THR 216 n 216 THR 216 A SER 217 n 217 SER 217 A PHE 218 n 218 PHE 218 A THR 219 n 219 THR 219 A TYR 220 n 220 TYR 220 A ASN 221 n 221 ASN 221 A GLN 222 n 222 GLN 222 A GLN 223 n 223 GLN 223 A GLU 224 n 224 GLU 224 A PHE 225 n 225 PHE 225 A VAL 226 n 226 VAL 226 A ILE 227 n 227 ILE 227 A VAL 228 n 228 VAL 228 A ASP 229 n 229 ASP 229 A THR 230 n 230 THR 230 A ALA 231 n 231 ALA 231 A GLY 232 n 232 GLY 232 A MSE 233 n 233 MSE 233 A ARG 234 n 234 ARG 234 A LYS 235 n 235 LYS 235 A LYS 236 n 236 LYS 236 A GLY 237 n 237 GLY 237 A LYS 238 n 238 LYS 238 A VAL 239 n 239 VAL 239 A TYR 240 n 240 TYR 240 A GLU 241 n 241 GLU 241 A THR 242 n 242 THR 242 A THR 243 n 243 THR 243 A GLU 244 n 244 GLU 244 A LYS 245 n 245 LYS 245 A TYR 246 n 246 TYR 246 A SER 247 n 247 SER 247 A VAL 248 n 248 VAL 248 A LEU 249 n 249 LEU 249 A ARG 250 n 250 ARG 250 A ALA 251 n 251 ALA 251 A LEU 252 n 252 LEU 252 A LYS 253 n 253 LYS 253 A ALA 254 n 254 ALA 254 A ILE 255 n 255 ILE 255 A ASP 256 n 256 ASP 256 A ARG 257 n 257 ARG 257 A SER 258 n 258 SER 258 A GLU 259 n 259 GLU 259 A VAL 260 n 260 VAL 260 A VAL 261 n 261 VAL 261 A ALA 262 n 262 ALA 262 A VAL 263 n 263 VAL 263 A VAL 264 n 264 VAL 264 A LEU 265 n 265 LEU 265 A ASP 266 n 266 ASP 266 A GLY 267 n 267 GLY 267 A GLU 268 n 268 GLU 268 A GLU 269 n 269 GLU 269 A GLY 270 n 270 GLY 270 A ILE 271 n 271 ILE 271 A ILE 272 n 272 ILE 272 A GLU 273 n 273 GLU 273 A GLN 274 n 274 GLN 274 A ASP 275 n 275 ASP 275 A LYS 276 n 276 LYS 276 A ARG 277 n 277 ARG 277 A ILE 278 n 278 ILE 278 A ALA 279 n 279 ALA 279 A GLY 280 n 280 GLY 280 A TYR 281 n 281 TYR 281 A ALA 282 n 282 ALA 282 A HIS 283 n 283 HIS 283 A GLU 284 n 284 GLU 284 A ALA 285 n 285 ALA 285 A GLY 286 n 286 GLY 286 A LYS 287 n 287 LYS 287 A ALA 288 n 288 ALA 288 A VAL 289 n 289 VAL 289 A VAL 290 n 290 VAL 290 A ILE 291 n 291 ILE 291 A VAL 292 n 292 VAL 292 A VAL 293 n 293 VAL 293 A ASN 294 n 294 ASN 294 A LYS 295 n 295 LYS 295 A TRP 296 n 296 TRP 296 A ASP 297 n 297 ASP 297 A ALA 298 n 298 ALA 298 A VAL 299 n 299 VAL 299 A ASP 300 n 300 ASP 300 A LYS 301 n 301 LYS 301 A ASP 302 n 302 ASP 302 A GLU 303 n 303 GLU 303 A SER 304 n 304 SER 304 A THR 305 n 305 THR 305 A MSE 306 n 306 MSE 306 A LYS 307 n 307 LYS 307 A GLU 308 n 308 GLU 308 A PHE 309 n 309 PHE 309 A GLU 310 n 310 GLU 310 A GLU 311 n 311 GLU 311 A ASN 312 n 312 ASN 312 A ILE 313 n 313 ILE 313 A ARG 314 n 314 ARG 314 A ASP 315 n 315 ASP 315 A HIS 316 n 316 HIS 316 A PHE 317 n 317 PHE 317 A GLN 318 n 318 GLN 318 A PHE 319 n 319 PHE 319 A LEU 320 n 320 LEU 320 A ASP 321 n 321 ASP 321 A TYR 322 n 322 TYR 322 A ALA 323 n 323 ALA 323 A PRO 324 n 324 PRO 324 A ILE 325 n 325 ILE 325 A LEU 326 n 326 LEU 326 A PHE 327 n 327 PHE 327 A MSE 328 n 328 MSE 328 A SER 329 n 329 SER 329 A ALA 330 n 330 ALA 330 A LEU 331 n 331 LEU 331 A THR 332 n 332 THR 332 A LYS 333 n 333 LYS 333 A LYS 334 n 334 LYS 334 A ARG 335 n 335 ARG 335 A ILE 336 n 336 ILE 336 A HIS 337 n 337 HIS 337 A THR 338 n 338 THR 338 A LEU 339 n 339 LEU 339 A MSE 340 n 340 MSE 340 A PRO 341 n 341 PRO 341 A ALA 342 n 342 ALA 342 A ILE 343 n 343 ILE 343 A ILE 344 n 344 ILE 344 A LYS 345 n 345 LYS 345 A ALA 346 n 346 ALA 346 A SER 347 n 347 SER 347 A GLU 348 n 348 GLU 348 A ASN 349 n 349 ASN 349 A HIS 350 n 350 HIS 350 A SER 351 n 351 SER 351 A LEU 352 n 352 LEU 352 A ARG 353 n 353 ARG 353 A VAL 354 n 354 VAL 354 A GLN 355 n 355 GLN 355 A THR 356 n 356 THR 356 A ASN 357 n 357 ASN 357 A VAL 358 n 358 VAL 358 A LEU 359 n 359 LEU 359 A ASN 360 n 360 ASN 360 A ASP 361 n 361 ASP 361 A VAL 362 n 362 VAL 362 A ILE 363 n 363 ILE 363 A MSE 364 n 364 MSE 364 A ASP 365 n 365 ASP 365 A ALA 366 n 366 ALA 366 A VAL 367 n 367 VAL 367 A ALA 368 n 368 ALA 368 A MSE 369 n 369 MSE 369 A ASN 370 n 370 ASN 370 A PRO 371 n 371 PRO 371 A THR 372 n 372 THR 372 A PRO 373 n 373 PRO 373 A THR 374 n 374 THR 374 A HIS 375 n 375 HIS 375 A ASN 376 n 376 ASN 376 A GLY 377 n 377 GLY 377 A SER 378 n 378 SER 378 A ARG 379 n 379 ARG 379 A LEU 380 n 380 LEU 380 A LYS 381 n 381 LYS 381 A ILE 382 n 382 ILE 382 A TYR 383 n 383 TYR 383 A TYR 384 n 384 TYR 384 A ALA 385 n 385 ALA 385 A THR 386 n 386 THR 386 A GLN 387 n 387 GLN 387 A VAL 388 n 388 VAL 388 A SER 389 n 389 SER 389 A VAL 390 n 390 VAL 390 A LYS 391 n 391 LYS 391 A PRO 392 n 392 PRO 392 A PRO 393 n 393 PRO 393 A SER 394 n 394 SER 394 A PHE 395 n 395 PHE 395 A VAL 396 n 396 VAL 396 A VAL 397 n 397 VAL 397 A PHE 398 n 398 PHE 398 A VAL 399 n 399 VAL 399 A ASN 400 n 400 ASN 400 A ASP 401 n 401 ASP 401 A PRO 402 n 402 PRO 402 A GLU 403 n 403 GLU 403 A LEU 404 n 404 LEU 404 A MSE 405 n 405 MSE 405 A HIS 406 n 406 HIS 406 A PHE 407 n 407 PHE 407 A SER 408 n 408 SER 408 A TYR 409 n 409 TYR 409 A GLU 410 n 410 GLU 410 A ARG 411 n 411 ARG 411 A PHE 412 n 412 PHE 412 A LEU 413 n 413 LEU 413 A GLU 414 n 414 GLU 414 A ASN 415 n 415 ASN 415 A ARG 416 n 416 ARG 416 A ILE 417 n 417 ILE 417 A ARG 418 n 418 ARG 418 A ASP 419 n 419 ASP 419 A ALA 420 n 420 ALA 420 A PHE 421 n 421 PHE 421 A GLY 422 n 422 GLY 422 A PHE 423 n 423 PHE 423 A GLU 424 n 424 GLU 424 A GLY 425 n 425 GLY 425 A THR 426 n 426 THR 426 A PRO 427 n 427 PRO 427 A ILE 428 n 428 ILE 428 A LYS 429 n 429 LYS 429 A ILE 430 n 430 ILE 430 A PHE 431 n 431 PHE 431 A ALA 432 n 432 ALA 432 A ARG 433 n 433 ARG 433 A ALA 434 n 434 ALA 434 A ARG 435 n 435 ARG 435 A LYS 436 n 436 LYS 436 A author_defined_assembly 1 monomeric A HIS 406 A NE2 HIS 406 1_555 A ZN 900 B ZN ZN 1_555 A HIS 375 A ND1 HIS 375 1_555 95.8 A HIS 406 A NE2 HIS 406 1_555 A ZN 900 B ZN ZN 1_555 A GLU 311 A OE1 GLU 311 4_466 100.6 A HIS 375 A ND1 HIS 375 1_555 A ZN 900 B ZN ZN 1_555 A GLU 311 A OE1 GLU 311 4_466 142.4 A MSE 80 SELENOMETHIONINE A MSE 80 MET A MSE 89 SELENOMETHIONINE A MSE 89 MET A MSE 195 SELENOMETHIONINE A MSE 195 MET A MSE 233 SELENOMETHIONINE A MSE 233 MET A MSE 306 SELENOMETHIONINE A MSE 306 MET A MSE 328 SELENOMETHIONINE A MSE 328 MET A MSE 340 SELENOMETHIONINE A MSE 340 MET A MSE 364 SELENOMETHIONINE A MSE 364 MET A MSE 369 SELENOMETHIONINE A MSE 369 MET A MSE 405 SELENOMETHIONINE A MSE 405 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 25 A N GLY 25 A O SER 44 A O SER 44 A N TYR 43 A N TYR 43 A O LEU 55 A O LEU 55 A O ASN 54 A O ASN 54 A N VAL 6 A N VAL 6 A N ALA 7 A N ALA 7 A O ILE 87 A O ILE 87 A N PHE 88 A N PHE 88 A O ALA 117 A O ALA 117 A N LEU 116 A N LEU 116 A O TYR 142 A O TYR 142 A N ILE 202 A N ILE 202 A O THR 219 A O THR 219 A N PHE 218 A N PHE 218 A O PHE 225 A O PHE 225 A O VAL 226 A O VAL 226 A N PHE 178 A N PHE 178 A N CYS 179 A N CYS 179 A O ALA 262 A O ALA 262 A N LEU 265 A N LEU 265 A O VAL 292 A O VAL 292 A N VAL 293 A N VAL 293 A O LEU 326 A O LEU 326 A N HIS 375 A N HIS 375 A O SER 378 A O SER 378 A N TYR 383 A N TYR 383 A O PHE 398 A O PHE 398 A N VAL 397 A N VAL 397 A O PHE 431 A O PHE 431 1 A CD GLU 26 A CD GLU 26 1 Y 1 A OE1 GLU 26 A OE1 GLU 26 1 Y 1 A OE2 GLU 26 A OE2 GLU 26 1 Y 1 A CG ARG 73 A CG ARG 73 1 Y 1 A CD ARG 73 A CD ARG 73 1 Y 1 A NE ARG 73 A NE ARG 73 1 Y 1 A CZ ARG 73 A CZ ARG 73 1 Y 1 A NH1 ARG 73 A NH1 ARG 73 1 Y 1 A NH2 ARG 73 A NH2 ARG 73 1 Y 1 A NH1 ARG 93 A NH1 ARG 93 1 Y 1 A NH2 ARG 93 A NH2 ARG 93 1 Y 1 A CG ASN 129 A CG ASN 129 1 Y 1 A OD1 ASN 129 A OD1 ASN 129 1 Y 1 A ND2 ASN 129 A ND2 ASN 129 1 Y 1 A CE LYS 253 A CE LYS 253 1 Y 1 A NZ LYS 253 A NZ LYS 253 1 Y 1 A CD ARG 277 A CD ARG 277 1 Y 1 A NE ARG 277 A NE ARG 277 1 Y 1 A CZ ARG 277 A CZ ARG 277 1 Y 1 A NH1 ARG 277 A NH1 ARG 277 1 Y 1 A NH2 ARG 277 A NH2 ARG 277 1 Y 1 A CD LYS 345 A CD LYS 345 1 Y 1 A CE LYS 345 A CE LYS 345 1 Y 1 A NZ LYS 345 A NZ LYS 345 1 Y 1 A NE ARG 411 A NE ARG 411 1 Y 1 A CZ ARG 411 A CZ ARG 411 1 Y 1 A NH1 ARG 411 A NH1 ARG 411 1 Y 1 A NH2 ARG 411 A NH2 ARG 411 1 Y 1 A CD LYS 429 A CD LYS 429 1 Y 1 A CE LYS 429 A CE LYS 429 1 Y 1 A NZ LYS 429 A NZ LYS 429 1 Y 1 A MSE 1 A MSE 1 1 Y 1 A GLY 2 A GLY 2 1 Y 1 A ILE 30 A ILE 30 1 Y 1 A VAL 31 A VAL 31 1 Y 1 A GLU 32 A GLU 32 1 Y 1 A ASP 33 A ASP 33 1 Y 1 A THR 34 A THR 34 1 Y 1 A PRO 35 A PRO 35 1 Y 1 A GLY 36 A GLY 36 1 Y 1 A VAL 37 A VAL 37 1 Y 1 A THR 38 A THR 38 1 Y 1 A ARG 39 A ARG 39 1 Y 1 A ASP 40 A ASP 40 1 Y 1 A THR 58 A THR 58 1 Y 1 A GLY 59 A GLY 59 1 Y 1 A GLY 60 A GLY 60 1 Y 1 A ILE 61 A ILE 61 1 Y 1 A ASP 62 A ASP 62 1 Y 1 A ILE 63 A ILE 63 1 Y 1 A GLY 64 A GLY 64 1 Y 1 A ASP 65 A ASP 65 1 Y 1 A GLU 66 A GLU 66 1 Y 1 A THR 124 A THR 124 1 Y 1 A GLU 125 A GLU 125 1 Y 1 A MSE 126 A MSE 126 1 Y 1 A ARG 127 A ARG 127 1 Y 1 A ALA 128 A ALA 128 1 Y 1 A ASN 205 A ASN 205 1 Y 1 A VAL 206 A VAL 206 1 Y 1 A ALA 207 A ALA 207 1 Y 1 A GLY 208 A GLY 208 1 Y 1 A THR 209 A THR 209 1 Y 1 A THR 210 A THR 210 1 Y 1 A ARG 211 A ARG 211 1 Y 1 A ASP 212 A ASP 212 1 Y 1 A ALA 213 A ALA 213 1 Y 1 A A ASP ASN 122 123 148.65 1 A A ARG LYS 435 436 73.92 1 11.98 1.60 122.70 134.68 A A A O C N TYR TYR ASP 131 131 132 Y 1 A ASN 13 81.86 27.82 1 A ASN 50 -85.21 30.02 1 A PHE 68 -73.05 -80.51 1 A TYR 131 -106.44 -85.90 1 A ASP 132 -115.76 50.46 1 A GLN 222 72.03 -5.33 1 A ASP 300 -69.61 82.46 1 A PHE 317 -117.76 64.72 41.463 -2.29 0.00 0.00 -0.61 0.00 2.89 0.932 0.895 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.27353 0.21539 0.21815 2.50 19.96 814 15364 5.0 100.00 22.068 0.232 RANDOM 1 Isotropic THROUGHOUT MAD 0.633 0.319 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 2.50 19.96 31 3235 57 0 3147 0.010 0.022 3266 0.006 0.020 2974 1.251 1.977 4431 0.766 3.000 6902 12.283 5.000 395 33.420 24.459 148 16.346 15.000 554 19.100 15.000 19 0.071 0.200 502 0.004 0.020 3573 0.002 0.020 655 0.202 0.200 670 0.196 0.200 2930 0.179 0.200 1593 0.083 0.200 1768 0.143 0.200 74 0.089 0.200 1 0.093 0.200 9 0.249 0.200 50 0.179 0.200 8 1.296 1.500 2132 0.062 1.500 809 0.816 2.000 3221 1.863 3.000 1414 2.644 4.500 1210 0.319 0.254 2.564 67 1076 20 100.00 2.5 30.0 2HJG 16253 2.0 2.0 0.098 1 17.8 6.8 99.9 0.32 2.5 2.65 5.1 6.8 99 refinement REFMAC 5.2.0005 data reduction MOSFLM data scaling CCP4 (SCALA) phasing SOLVE GTP-binding protein engA The crystal structure of the B. subtilis YphC GTPase in complex with GDP 1 N N 2 N N 3 N N 3 N N 4 N N The biological assembly is a monomer A GLY 15 A GLY 15 HELX_P A ILE 23 A ILE 23 1 1 9 A PRO 67 A PRO 67 HELX_P A ALA 83 A ALA 83 1 2 17 A THR 97 A THR 97 HELX_P A TYR 108 A TYR 108 1 3 12 A PHE 133 A PHE 133 HELX_P A GLY 137 A GLY 137 5 4 5 A GLY 151 A GLY 151 HELX_P A HIS 162 A HIS 162 1 5 12 A PHE 163 A PHE 163 HELX_P A ILE 166 A ILE 166 5 6 4 A GLY 187 A GLY 187 HELX_P A GLY 197 A GLY 197 1 7 11 A ASP 229 A ASP 229 HELX_P A ARG 234 A ARG 234 1 8 6 A GLU 244 A GLU 244 HELX_P A SER 258 A SER 258 1 9 15 A ILE 272 A ILE 272 HELX_P A ALA 285 A ALA 285 1 10 14 A LYS 295 A LYS 295 HELX_P A VAL 299 A VAL 299 5 11 5 A SER 304 A SER 304 HELX_P A PHE 317 A PHE 317 1 12 14 A GLN 318 A GLN 318 HELX_P A ASP 321 A ASP 321 5 13 4 A ARG 335 A ARG 335 HELX_P A HIS 337 A HIS 337 5 14 3 A THR 338 A THR 338 HELX_P A SER 351 A SER 351 1 15 14 A GLN 355 A GLN 355 HELX_P A ASN 370 A ASN 370 1 16 16 A ASP 401 A ASP 401 HELX_P A MSE 405 A MSE 405 5 17 5 A HIS 406 A HIS 406 HELX_P A GLY 422 A GLY 422 1 18 17 covale 1.327 A ALA 79 A C ALA 79 1_555 A MSE 80 A N MSE 80 1_555 covale 1.331 A MSE 80 A C MSE 80 1_555 A ASP 81 A N ASP 81 1_555 covale 1.329 A PHE 88 A C PHE 88 1_555 A MSE 89 A N MSE 89 1_555 covale 1.328 A MSE 89 A C MSE 89 1_555 A VAL 90 A N VAL 90 1_555 covale 1.324 A ALA 194 A C ALA 194 1_555 A MSE 195 A N MSE 195 1_555 covale 1.330 A MSE 195 A C MSE 195 1_555 A LEU 196 A N LEU 196 1_555 covale 1.327 A GLY 232 A C GLY 232 1_555 A MSE 233 A N MSE 233 1_555 covale 1.330 A MSE 233 A C MSE 233 1_555 A ARG 234 A N ARG 234 1_555 covale 1.329 A THR 305 A C THR 305 1_555 A MSE 306 A N MSE 306 1_555 covale 1.328 A MSE 306 A C MSE 306 1_555 A LYS 307 A N LYS 307 1_555 covale 1.332 A PHE 327 A C PHE 327 1_555 A MSE 328 A N MSE 328 1_555 covale 1.329 A MSE 328 A C MSE 328 1_555 A SER 329 A N SER 329 1_555 covale 1.329 A LEU 339 A C LEU 339 1_555 A MSE 340 A N MSE 340 1_555 covale 1.335 A MSE 340 A C MSE 340 1_555 A PRO 341 A N PRO 341 1_555 covale 1.328 A ILE 363 A C ILE 363 1_555 A MSE 364 A N MSE 364 1_555 covale 1.328 A MSE 364 A C MSE 364 1_555 A ASP 365 A N ASP 365 1_555 covale 1.336 A ALA 368 A C ALA 368 1_555 A MSE 369 A N MSE 369 1_555 covale 1.328 A MSE 369 A C MSE 369 1_555 A ASN 370 A N ASN 370 1_555 covale 1.326 A LEU 404 A C LEU 404 1_555 A MSE 405 A N MSE 405 1_555 covale 1.324 A MSE 405 A C MSE 405 1_555 A HIS 406 A N HIS 406 1_555 metalc 1.971 A ZN 900 B ZN ZN 1_555 A HIS 406 A NE2 HIS 406 1_555 metalc 2.088 A ZN 900 B ZN ZN 1_555 A HIS 375 A ND1 HIS 375 1_555 metalc 2.194 A ZN 900 B ZN ZN 1_555 A GLU 311 A OE1 GLU 311 4_466 HYDROLASE GTPase EngA KH-domain, HYDROLASE A LYS 391 A LYS 391 1 A PRO 392 A PRO 392 -0.45 ENGA_BACSU UNP 1 1 P50743 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM DEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVA EHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVY ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL DYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVN DPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK 1 436 2HJG 1 436 P50743 A 1 1 436 1 MET MODIFIED RESIDUE MSE 1 2HJG A P50743 UNP 1 1 1 MET MODIFIED RESIDUE MSE 80 2HJG A P50743 UNP 80 80 1 MET MODIFIED RESIDUE MSE 89 2HJG A P50743 UNP 89 89 1 MET MODIFIED RESIDUE MSE 126 2HJG A P50743 UNP 126 126 1 MET MODIFIED RESIDUE MSE 195 2HJG A P50743 UNP 195 195 1 MET MODIFIED RESIDUE MSE 233 2HJG A P50743 UNP 233 233 1 MET MODIFIED RESIDUE MSE 306 2HJG A P50743 UNP 306 306 1 MET MODIFIED RESIDUE MSE 328 2HJG A P50743 UNP 328 328 1 MET MODIFIED RESIDUE MSE 340 2HJG A P50743 UNP 340 340 1 MET MODIFIED RESIDUE MSE 364 2HJG A P50743 UNP 364 364 1 MET MODIFIED RESIDUE MSE 369 2HJG A P50743 UNP 369 369 1 MET MODIFIED RESIDUE MSE 405 2HJG A P50743 UNP 405 405 7 7 2 3 anti-parallel anti-parallel parallel parallel parallel parallel anti-parallel anti-parallel parallel parallel parallel parallel anti-parallel anti-parallel parallel A ALA 24 A ALA 24 A ARG 27 A ARG 27 A ILE 42 A ILE 42 A SER 45 A SER 45 A ASN 54 A ASN 54 A ILE 56 A ILE 56 A VAL 5 A VAL 5 A VAL 9 A VAL 9 A VAL 85 A VAL 85 A ASN 91 A ASN 91 A VAL 114 A VAL 114 A ASN 119 A ASN 119 A TYR 142 A TYR 142 A PRO 143 A PRO 143 A VAL 201 A VAL 201 A VAL 203 A VAL 203 A THR 216 A THR 216 A TYR 220 A TYR 220 A GLN 223 A GLN 223 A ILE 227 A ILE 227 A ILE 176 A ILE 176 A ILE 181 A ILE 181 A VAL 260 A VAL 260 A ASP 266 A ASP 266 A ALA 288 A ALA 288 A ASN 294 A ASN 294 A ILE 325 A ILE 325 A PHE 327 A PHE 327 A THR 374 A THR 374 A HIS 375 A HIS 375 A SER 378 A SER 378 A ARG 379 A ARG 379 A ILE 382 A ILE 382 A SER 389 A SER 389 A SER 394 A SER 394 A VAL 399 A VAL 399 A LYS 429 A LYS 429 A ALA 434 A ALA 434 BINDING SITE FOR RESIDUE ZN A 900 Software 3 BINDING SITE FOR RESIDUE GDP A 500 Software 15 BINDING SITE FOR RESIDUE GDP A 800 Software 13 A GLU 311 A GLU 311 3 4_466 A HIS 375 A HIS 375 3 1_555 A HIS 406 A HIS 406 3 1_555 A ASN 185 A ASN 185 15 1_555 A VAL 186 A VAL 186 15 1_555 A GLY 187 A GLY 187 15 1_555 A LYS 188 A LYS 188 15 1_555 A SER 189 A SER 189 15 1_555 A SER 190 A SER 190 15 1_555 A LYS 236 A LYS 236 15 1_555 A ASN 294 A ASN 294 15 1_555 A LYS 295 A LYS 295 15 1_555 A ASP 297 A ASP 297 15 1_555 A SER 329 A SER 329 15 1_555 A ALA 330 A ALA 330 15 1_555 A LEU 331 A LEU 331 15 1_555 A ARG 435 A ARG 435 15 1_655 A LYS 436 A LYS 436 15 1_655 A PRO 12 A PRO 12 13 1_555 A ASN 13 A ASN 13 13 1_555 A VAL 14 A VAL 14 13 1_555 A GLY 15 A GLY 15 13 1_555 A LYS 16 A LYS 16 13 1_555 A SER 17 A SER 17 13 1_555 A THR 18 A THR 18 13 1_555 A ASN 119 A ASN 119 13 1_555 A LYS 120 A LYS 120 13 1_555 A ASP 122 A ASP 122 13 1_555 A SER 145 A SER 145 13 1_555 A GLY 146 A GLY 146 13 1_555 A THR 147 A THR 147 13 1_555 19 P 21 21 21