0.007821 0.000000 0.004273 0.000000 0.022200 0.000000 0.000000 0.000000 0.015489 0.00000 0.00000 0.00000 Feldman, M.E. Simon, M.D. Shokat, K.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 118.65 90.00 127.856 45.046 73.568 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H7 N O2 125.125 3-PROP-2-YN-1-YL-1,3-OXAZOLIDIN-2-ONE 1-(PROP-2-YNYL)-OXAZOLIDINE-2-ONE non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C Y 90 N C N 91 N N Y 92 N N Y 93 N C Y 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C N 122 N N N 123 N C N 124 N O N 125 N N N 126 N C N 127 N N N 128 N C N 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N P N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 N C N 155 R C Y 156 N N Y 157 N C Y 158 N N Y 159 N C N 160 N C N 161 N O N 162 N N N 163 N C N 164 N N N 165 N N Y 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N P N 183 N O N 184 N O N 185 N O N 186 N C N 187 R C N 188 N O N 189 S C N 190 N O N 191 N C N 192 R C N 193 N N N 194 N C N 195 N O N 196 N N N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N O N 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N O N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 N C N 258 N C N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N C N 267 N O N 268 N C N 269 N O N 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N O N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 S C N 288 N C N 289 N C N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N C N 311 N C N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C N 332 N C N 333 N C N 334 N C N 335 N N N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C N 357 N C N 358 N S N 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N C N 373 N C N 374 N C N 375 N C N 376 N C N 377 N C N 378 N O N 379 N N N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 N C Y 393 N C Y 394 N C Y 395 N C Y 396 N C Y 397 N C Y 398 N C N 399 N O N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N N N 412 S C N 413 N C N 414 N O N 415 N C N 416 N C N 417 N C N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 N C N 433 N O N 434 N O N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N N N 443 S C N 444 N C N 445 N O N 446 R C N 447 N O N 448 N C N 449 N O N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N N N 460 S C N 461 N C N 462 N O N 463 N C Y 464 N C Y 465 N C Y 466 N C Y 467 N N Y 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N C N 473 N O N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N N N 487 S C N 488 N C N 489 N O N 490 N C Y 491 N C Y 492 N C Y 493 N C Y 494 N C Y 495 N C Y 496 N C N 497 N O N 498 N O N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N N N 511 S C N 512 N C N 513 N O N 514 N C N 515 N C N 516 N C N 517 N O N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing Y 93 N sing Y 94 N sing Y 95 N doub N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N doub N 102 N sing N 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing Y 166 N sing Y 167 N sing Y 168 N doub N 169 N sing Y 170 N sing N 171 N sing Y 172 N doub N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N trip N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing Y 392 N doub Y 393 N sing Y 394 N sing N 395 N sing Y 396 N doub N 397 N sing Y 398 N doub N 399 N sing Y 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N doub N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N doub N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N doub N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N doub N 457 N sing N 458 N sing N 459 N sing N 460 N sing Y 461 N doub Y 462 N sing Y 463 N sing N 464 N sing Y 465 N doub Y 466 N sing Y 467 N sing N 468 N sing Y 469 N sing Y 470 N doub N 471 N sing Y 472 N doub N 473 N sing Y 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N doub N 485 N sing N 486 N sing N 487 N sing N 488 N sing Y 489 N doub Y 490 N sing Y 491 N sing N 492 N sing Y 493 N doub N 494 N sing Y 495 N doub N 496 N sing Y 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N doub N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing US Acs Chem.Biol. 1554-8929 1 755 760 10.1021/cb6003756 17240973 Structure and properties of a re-engineered homeodomain protein-DNA interface. 2006 10.2210/pdb2hot/pdb pdb_00002hot 100 1 KOHZU:Double Crystal Si(111) CCD 2005-07-25 ADSC QUANTUM 210 SINGLE WAVELENGTH M x-ray 1 1.11588 1.0 8.3.1 ALS 1.11588 SYNCHROTRON ALS BEAMLINE 8.3.1 6389.133 5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*CP*CP*GP*GP*A)-3' 1 syn polymer 6496.224 5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3' 1 syn polymer 7516.522 Segmentation polarity homeobox protein engrailed Engrailed homeodomain I45V,I47G,Q50K,K52M 2 man polymer 125.125 3-PROP-2-YN-1-YL-1,3-OXAZOLIDIN-2-ONE 1 syn non-polymer 92.094 GLYCEROL 2 syn non-polymer 18.015 water 80 nat water Homeobox no no (DT)(DT)(DT)(DT)(DG)(DC)(DC)(DA)(DT)(DG)(DT)(DA)(DA)(DT)(DC)(DC)(DC)(DC)(DG)(DG) (DA) TTTTGCCATGTAATCCCCGGA C polydeoxyribonucleotide no no (DA)(DT)(DC)(DC)(DG)(DG)(DG)(DG)(DA)(DT)(DT)(DA)(DC)(DA)(DT)(DG)(DG)(DC)(DA)(DA) (DA) ATCCGGGGATTACATGGCAAA D polydeoxyribonucleotide no no GSDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKKST GSDEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQVKGWFKNMRAKIKKST A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n fruit fly Drosophila Escherichia Escherichia coli sample En 7227 Drosophila melanogaster 511693 Escherichia coli BL21 BL21 pMal-c2 pMal-EnHDf 1 3.27 62.40 VAPOR DIFFUSION, HANGING DROP 7 PEG-400/NH4OAc, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 PEG400 1 NH4OAc 1 H2O 1 NH4OAc 2 bis-Tris-Propane 2 PEG400 2 -5.405 1 20 C 2 D 42 5.577 C_DT2:DA42_D 1 -9.605 -0.257 0.001 -0.176 -0.560 1 20 C 3 D 41 1.656 C_DT3:DA41_D 2 -5.966 0.053 0.168 -0.319 2.102 1 20 C 4 D 40 5.104 C_DT4:DA40_D 3 -19.506 0.038 -0.201 -0.355 -12.720 1 19 C 5 D 39 -1.728 C_DG5:DC39_D 4 -9.667 -0.738 -0.266 -0.463 -6.061 1 19 C 6 D 38 -5.502 C_DC6:DG38_D 5 -4.771 -0.009 0.179 -0.006 3.148 1 19 C 7 D 37 -0.031 C_DC7:DG37_D 6 -5.295 0.518 -0.025 -0.424 -2.353 1 20 C 8 D 36 -3.041 C_DA8:DT36_D 7 -12.477 1.041 0.195 -0.287 -0.374 1 20 C 9 D 35 -4.223 C_DT9:DA35_D 8 -10.265 0.266 0.040 -0.280 -2.473 1 19 C 10 D 34 0.720 C_DG10:DC34_D 9 -7.129 -0.225 0.042 -0.204 7.642 1 20 C 11 D 33 8.184 C_DT11:DA33_D 10 -9.036 0.001 -0.112 -0.074 0.204 1 20 C 12 D 32 2.949 C_DA12:DT32_D 11 -16.220 0.325 -0.386 -0.354 2.608 1 20 C 13 D 31 2.817 C_DA13:DT31_D 12 -15.675 -0.109 0.040 -0.379 -3.859 1 20 C 14 D 30 0.832 C_DT14:DA30_D 13 -16.867 -0.237 -0.030 -0.290 -0.925 1 19 C 15 D 29 1.936 C_DC15:DG29_D 14 -8.191 0.300 -0.082 -0.145 5.899 1 19 C 16 D 28 -1.463 C_DC16:DG28_D 15 -8.368 0.375 -0.105 -0.426 0.911 1 19 C 17 D 27 -2.480 C_DC17:DG27_D 16 -20.609 0.462 0.323 -0.439 -9.006 1 19 C 18 D 26 -1.504 C_DC18:DG26_D 17 -10.676 -0.226 0.055 -0.262 3.418 1 19 C 19 D 25 0.297 C_DG19:DC25_D 18 -10.463 0.005 -0.090 -0.231 -0.568 1 19 C 20 D 24 -0.410 C_DG20:DC24_D 19 -11.427 -0.387 -0.302 -0.311 4.770 1 20 C 21 D 23 4.276 C_DA21:DT23_D 20 -18.739 0.126 -0.080 -0.174 3.440 37.227 C C 2 3 12.822 D D 42 41 3.268 8.121 1.034 0.977 CC_DT2DT3:DA41DA42_DD 1 1.611 -2.544 36.327 0.410 -1.397 3.269 31.177 C C 3 4 1.257 D D 41 40 3.279 0.675 -0.140 0.130 CC_DT3DT4:DA40DA41_DD 2 1.627 -3.028 31.128 0.113 0.572 3.255 38.047 C C 4 5 19.274 D D 40 39 3.587 12.346 0.224 -0.501 CC_DT4DG5:DC39DA40_DD 3 2.281 -3.561 35.988 -2.459 -0.031 3.168 34.971 C C 5 6 -1.710 D D 39 38 3.171 -1.027 -0.090 0.022 CC_DG5DC6:DG38DC39_DD 4 -2.243 3.736 34.887 0.187 -0.179 3.138 33.137 C C 6 7 -2.495 D D 38 37 3.169 -1.421 -0.073 0.327 CC_DC6DC7:DG37DG38_DD 5 2.591 -4.548 33.009 0.804 0.548 3.508 48.065 C C 7 8 -2.741 D D 37 36 3.519 -2.229 -0.424 0.700 CC_DC7DA8:DT36DG37_DD 6 -4.236 5.209 47.840 1.049 0.162 3.256 28.118 C C 8 9 -9.225 D D 36 35 3.245 -4.463 0.041 -0.321 CC_DA8DT9:DA35DT36_DD 7 0.717 -1.482 27.760 0.387 0.083 3.353 38.077 C C 9 10 7.447 D D 35 34 3.306 4.845 0.536 0.451 CC_DT9DG10:DC34DA35_DD 8 1.372 -2.109 37.755 0.063 -0.643 3.006 25.476 C C 10 11 10.637 D D 34 33 3.076 4.664 -0.018 -0.097 CC_DG10DT11:DA33DC34_DD 9 1.008 -2.300 25.033 -1.472 0.311 3.545 44.429 C C 11 12 7.564 D D 33 32 3.428 5.705 -0.838 1.107 CC_DT11DA12:DT32DA33_DD 10 -0.437 0.579 44.077 0.900 1.065 3.132 32.825 C C 12 13 3.507 D D 32 31 3.214 1.976 0.388 -0.145 CC_DA12DA13:DT31DT32_DD 11 -3.955 7.020 32.534 -0.586 -1.348 3.369 31.949 C C 13 14 2.346 D D 31 30 3.399 1.291 -0.737 -1.091 CC_DA13DT14:DA30DT31_DD 12 -0.743 1.350 31.916 -2.224 1.200 3.323 34.910 C C 14 15 -2.500 D D 30 29 3.307 -1.499 -0.108 -0.421 CC_DT14DC15:DG29DA30_DD 13 -1.635 2.728 34.842 -0.472 -0.071 3.010 32.421 C C 15 16 14.986 D D 29 28 3.178 8.279 0.297 -0.274 CC_DC15DC16:DG28DG29_DD 14 0.038 -0.068 31.373 -1.892 -0.526 3.361 37.598 C C 16 17 6.968 D D 28 27 3.456 4.469 -0.305 -0.729 CC_DC16DC17:DG27DG28_DD 15 -4.851 7.564 37.036 -1.742 -0.190 3.235 33.136 C C 17 18 10.284 D D 27 26 3.405 5.801 0.342 -0.720 CC_DC17DC18:DG26DG27_DD 16 6.440 -11.419 32.013 -2.272 0.520 3.092 34.248 C C 18 19 20.089 D D 26 25 3.196 11.592 -0.004 0.270 CC_DC18DG19:DC25DG26_DD 17 3.242 -5.618 32.123 -1.355 0.514 3.309 31.211 C C 19 20 11.565 D D 25 24 3.476 6.181 0.133 -0.534 CC_DG19DG20:DC24DC25_DD 18 1.180 -2.209 30.585 -2.224 -0.012 3.081 33.229 C C 20 21 10.749 D D 24 23 3.165 6.113 0.265 -0.136 CC_DG20DA21:DT23DC24_DD 19 -0.986 1.733 32.663 -1.222 -0.623 software database_2 struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Advisory Version format compliance Refinement description Database references Derived calculations Data collection 1 0 2006-12-12 1 1 2008-05-01 1 2 2011-07-13 1 3 2017-10-18 1 4 2021-10-20 1 5 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Engrailed Homeodomain Q50K mutant bound to the same DNA but unmodified RCSB Y RCSB 2006-07-16 REL REL P2O 3-PROP-2-YN-1-YL-1,3-OXAZOLIDIN-2-ONE GOL GLYCEROL HOH water Solid-phase DNA synthesis sample Commercial solid-phase DNA synthesis sample P2O 22 4 P2O P2O 22 C GOL 201 5 GOL GOL 201 B GOL 202 5 GOL GOL 202 B HOH 1 6 HOH HOH 23 C HOH 9 6 HOH HOH 24 C HOH 21 6 HOH HOH 25 C HOH 23 6 HOH HOH 26 C HOH 26 6 HOH HOH 27 C HOH 28 6 HOH HOH 28 C HOH 32 6 HOH HOH 29 C HOH 33 6 HOH HOH 30 C HOH 39 6 HOH HOH 31 C HOH 46 6 HOH HOH 32 C HOH 49 6 HOH HOH 33 C HOH 51 6 HOH HOH 34 C HOH 52 6 HOH HOH 35 C HOH 54 6 HOH HOH 36 C HOH 55 6 HOH HOH 37 C HOH 57 6 HOH HOH 38 C HOH 60 6 HOH HOH 39 C HOH 61 6 HOH HOH 40 C HOH 66 6 HOH HOH 41 C HOH 69 6 HOH HOH 42 C HOH 71 6 HOH HOH 43 C HOH 73 6 HOH HOH 44 C HOH 79 6 HOH HOH 45 C HOH 4 6 HOH HOH 43 D HOH 8 6 HOH HOH 44 D HOH 10 6 HOH HOH 45 D HOH 11 6 HOH HOH 46 D HOH 12 6 HOH HOH 47 D HOH 14 6 HOH HOH 48 D HOH 17 6 HOH HOH 49 D HOH 20 6 HOH HOH 50 D HOH 24 6 HOH HOH 51 D HOH 30 6 HOH HOH 52 D HOH 36 6 HOH HOH 53 D HOH 37 6 HOH HOH 54 D HOH 38 6 HOH HOH 55 D HOH 40 6 HOH HOH 56 D HOH 47 6 HOH HOH 57 D HOH 64 6 HOH HOH 58 D HOH 68 6 HOH HOH 59 D HOH 70 6 HOH HOH 60 D HOH 72 6 HOH HOH 61 D HOH 75 6 HOH HOH 62 D HOH 77 6 HOH HOH 63 D HOH 80 6 HOH HOH 64 D HOH 2 6 HOH HOH 61 A HOH 3 6 HOH HOH 62 A HOH 5 6 HOH HOH 63 A HOH 6 6 HOH HOH 64 A HOH 25 6 HOH HOH 65 A HOH 27 6 HOH HOH 66 A HOH 29 6 HOH HOH 67 A HOH 35 6 HOH HOH 68 A HOH 41 6 HOH HOH 69 A HOH 42 6 HOH HOH 70 A HOH 48 6 HOH HOH 71 A HOH 56 6 HOH HOH 72 A HOH 59 6 HOH HOH 73 A HOH 62 6 HOH HOH 74 A HOH 63 6 HOH HOH 75 A HOH 78 6 HOH HOH 76 A HOH 7 6 HOH HOH 203 B HOH 13 6 HOH HOH 204 B HOH 15 6 HOH HOH 205 B HOH 16 6 HOH HOH 206 B HOH 18 6 HOH HOH 207 B HOH 19 6 HOH HOH 208 B HOH 22 6 HOH HOH 209 B HOH 31 6 HOH HOH 210 B HOH 34 6 HOH HOH 211 B HOH 43 6 HOH HOH 212 B HOH 44 6 HOH HOH 213 B HOH 45 6 HOH HOH 214 B HOH 50 6 HOH HOH 215 B HOH 53 6 HOH HOH 216 B HOH 58 6 HOH HOH 217 B HOH 65 6 HOH HOH 218 B HOH 67 6 HOH HOH 219 B HOH 74 6 HOH HOH 220 B HOH 76 6 HOH HOH 221 B T 1 n 1 DT 1 C T 2 n 2 DT 2 C T 3 n 3 DT 3 C T 4 n 4 DT 4 C G 5 n 5 DG 5 C C 6 n 6 DC 6 C C 7 n 7 DC 7 C A 8 n 8 DA 8 C T 9 n 9 DT 9 C G 10 n 10 DG 10 C T 11 n 11 DT 11 C A 12 n 12 DA 12 C A 13 n 13 DA 13 C T 14 n 14 DT 14 C C 15 n 15 DC 15 C C 16 n 16 DC 16 C C 17 n 17 DC 17 C C 18 n 18 DC 18 C G 19 n 19 DG 19 C G 20 n 20 DG 20 C A 21 n 21 DA 21 C A 22 n 1 DA 22 D T 23 n 2 DT 23 D C 24 n 3 DC 24 D C 25 n 4 DC 25 D G 26 n 5 DG 26 D G 27 n 6 DG 27 D G 28 n 7 DG 28 D G 29 n 8 DG 29 D A 30 n 9 DA 30 D T 31 n 10 DT 31 D T 32 n 11 DT 32 D A 33 n 12 DA 33 D C 34 n 13 DC 34 D A 35 n 14 DA 35 D T 36 n 15 DT 36 D G 37 n 16 DG 37 D G 38 n 17 DG 38 D C 39 n 18 DC 39 D A 40 n 19 DA 40 D A 41 n 20 DA 41 D A 42 n 21 DA 42 D n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A n 5 2 A n 6 3 A n 7 4 A ARG 5 n 8 ARG 5 A THR 6 n 9 THR 6 A ALA 7 n 10 ALA 7 A PHE 8 n 11 PHE 8 A SER 9 n 12 SER 9 A SER 10 n 13 SER 10 A GLU 11 n 14 GLU 11 A GLN 12 n 15 GLN 12 A LEU 13 n 16 LEU 13 A ALA 14 n 17 ALA 14 A ARG 15 n 18 ARG 15 A LEU 16 n 19 LEU 16 A LYS 17 n 20 LYS 17 A ARG 18 n 21 ARG 18 A GLU 19 n 22 GLU 19 A PHE 20 n 23 PHE 20 A ASN 21 n 24 ASN 21 A GLU 22 n 25 GLU 22 A ASN 23 n 26 ASN 23 A ARG 24 n 27 ARG 24 A TYR 25 n 28 TYR 25 A LEU 26 n 29 LEU 26 A THR 27 n 30 THR 27 A GLU 28 n 31 GLU 28 A ARG 29 n 32 ARG 29 A ARG 30 n 33 ARG 30 A ARG 31 n 34 ARG 31 A GLN 32 n 35 GLN 32 A GLN 33 n 36 GLN 33 A LEU 34 n 37 LEU 34 A SER 35 n 38 SER 35 A SER 36 n 39 SER 36 A GLU 37 n 40 GLU 37 A LEU 38 n 41 LEU 38 A GLY 39 n 42 GLY 39 A LEU 40 n 43 LEU 40 A ASN 41 n 44 ASN 41 A GLU 42 n 45 GLU 42 A ALA 43 n 46 ALA 43 A GLN 44 n 47 GLN 44 A VAL 45 n 48 VAL 45 A LYS 46 n 49 LYS 46 A GLY 47 n 50 GLY 47 A TRP 48 n 51 TRP 48 A PHE 49 n 52 PHE 49 A LYS 50 n 53 LYS 50 A ASN 51 n 54 ASN 51 A MET 52 n 55 MET 52 A ARG 53 n 56 ARG 53 A ALA 54 n 57 ALA 54 A LYS 55 n 58 LYS 55 A ILE 56 n 59 ILE 56 A LYS 57 n 60 LYS 57 A LYS 58 n 61 LYS 58 A SER 59 n 62 SER 59 A THR 60 n 63 THR 60 A n 1 -2 B n 2 -1 B n 3 0 B n 4 1 B LYS 2 n 5 LYS 2 B ARG 3 n 6 ARG 3 B PRO 4 n 7 PRO 4 B ARG 5 n 8 ARG 5 B THR 6 n 9 THR 6 B ALA 7 n 10 ALA 7 B PHE 8 n 11 PHE 8 B SER 9 n 12 SER 9 B SER 10 n 13 SER 10 B GLU 11 n 14 GLU 11 B GLN 12 n 15 GLN 12 B LEU 13 n 16 LEU 13 B ALA 14 n 17 ALA 14 B ARG 15 n 18 ARG 15 B LEU 16 n 19 LEU 16 B LYS 17 n 20 LYS 17 B ARG 18 n 21 ARG 18 B GLU 19 n 22 GLU 19 B PHE 20 n 23 PHE 20 B ASN 21 n 24 ASN 21 B GLU 22 n 25 GLU 22 B ASN 23 n 26 ASN 23 B ARG 24 n 27 ARG 24 B TYR 25 n 28 TYR 25 B LEU 26 n 29 LEU 26 B THR 27 n 30 THR 27 B GLU 28 n 31 GLU 28 B ARG 29 n 32 ARG 29 B ARG 30 n 33 ARG 30 B ARG 31 n 34 ARG 31 B GLN 32 n 35 GLN 32 B GLN 33 n 36 GLN 33 B LEU 34 n 37 LEU 34 B SER 35 n 38 SER 35 B SER 36 n 39 SER 36 B GLU 37 n 40 GLU 37 B LEU 38 n 41 LEU 38 B GLY 39 n 42 GLY 39 B LEU 40 n 43 LEU 40 B ASN 41 n 44 ASN 41 B GLU 42 n 45 GLU 42 B ALA 43 n 46 ALA 43 B GLN 44 n 47 GLN 44 B VAL 45 n 48 VAL 45 B LYS 46 n 49 LYS 46 B GLY 47 n 50 GLY 47 B TRP 48 n 51 TRP 48 B PHE 49 n 52 PHE 49 B LYS 50 n 53 LYS 50 B ASN 51 n 54 ASN 51 B MET 52 n 55 MET 52 B ARG 53 n 56 ARG 53 B ALA 54 n 57 ALA 54 B LYS 55 n 58 LYS 55 B ILE 56 n 59 ILE 56 B LYS 57 n 60 LYS 57 B LYS 58 n 61 LYS 58 B SER 59 n 62 SER 59 B n 63 60 B 2.6828 -.6772 -.2233 12.3002 1.7250 5.5397 .0198 .0077 -.0476 -.7935 -.0620 -.7270 -.0140 .2685 .0422 .0214 -.0269 .1143 -.1818 .0115 -.2091 refined 17.1870 29.3670 33.0710 X-RAY DIFFRACTION 3.2291 -.7342 -1.6442 9.7122 -.8750 3.0486 -.1014 -.0168 -.0182 .1202 .0717 .1865 .0554 -.0798 .0297 -.1070 -.0255 .0476 -.2200 -.0075 -.2351 refined -4.0500 20.2410 62.3060 X-RAY DIFFRACTION 10.0942 1.7600 -.5841 .3092 -.0971 .0438 -.3632 -.1037 -.5070 -.0403 .2098 -.3674 -.0539 .2261 .1534 .0351 -.1352 -.0793 .3027 .0454 .1206 refined 25.0810 28.3670 48.0200 X-RAY DIFFRACTION A 5 C 8 A 60 C 63 X-RAY DIFFRACTION 1 B 2 D 5 B 59 D 62 X-RAY DIFFRACTION 2 C 1 A 1 C 21 A 21 X-RAY DIFFRACTION 3 D 22 B 1 D 42 B 21 X-RAY DIFFRACTION 3 author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CD GLU 11 C CD GLU 14 1 Y 1 A OE1 GLU 11 C OE1 GLU 14 1 Y 1 A OE2 GLU 11 C OE2 GLU 14 1 Y 1 A CD GLU 22 C CD GLU 25 1 Y 1 A OE1 GLU 22 C OE1 GLU 25 1 Y 1 A OE2 GLU 22 C OE2 GLU 25 1 Y 1 A CD ARG 29 C CD ARG 32 1 Y 1 A NE ARG 29 C NE ARG 32 1 Y 1 A CZ ARG 29 C CZ ARG 32 1 Y 1 A NH1 ARG 29 C NH1 ARG 32 1 Y 1 A NH2 ARG 29 C NH2 ARG 32 1 Y 1 A CD LYS 57 C CD LYS 60 1 Y 1 A CE LYS 57 C CE LYS 60 1 Y 1 A NZ LYS 57 C NZ LYS 60 1 Y 1 A CD LYS 58 C CD LYS 61 1 Y 1 A CE LYS 58 C CE LYS 61 1 Y 1 A NZ LYS 58 C NZ LYS 61 1 Y 1 A CB THR 60 C CB THR 63 1 Y 1 A OG1 THR 60 C OG1 THR 63 1 Y 1 A CG2 THR 60 C CG2 THR 63 1 Y 1 B OE1 GLU 11 D OE1 GLU 14 1 Y 1 B OE2 GLU 11 D OE2 GLU 14 1 Y 1 B CZ ARG 29 D CZ ARG 32 1 Y 1 B NH1 ARG 29 D NH1 ARG 32 1 Y 1 B NH2 ARG 29 D NH2 ARG 32 1 Y 1 B CG LYS 57 D CG LYS 60 1 Y 1 B CD LYS 57 D CD LYS 60 1 Y 1 B CE LYS 57 D CE LYS 60 1 Y 1 B NZ LYS 57 D NZ LYS 60 1 Y 1 A GLY -2 C GLY 1 1 Y 1 A SER -1 C SER 2 1 Y 1 A ASP 0 C ASP 3 1 Y 1 A GLU 1 C GLU 4 1 Y 1 A LYS 2 C LYS 5 1 Y 1 A ARG 3 C ARG 6 1 Y 1 A PRO 4 C PRO 7 1 Y 1 B GLY -2 D GLY 1 1 Y 1 B SER -1 D SER 2 1 Y 1 B ASP 0 D ASP 3 1 Y 1 B GLU 1 D GLU 4 1 Y 1 B THR 60 D THR 63 1 Y 1 4.61 0.30 108.30 112.91 C C C O4' C1' N1 DT DT DT 1 1 1 N 1 3.79 0.30 108.30 112.09 C C C O4' C1' N1 DT DT DT 3 3 3 N 1 -6.55 1.00 110.10 103.55 C C C C1' O4' C4' DT DT DT 4 4 4 N 1 3.64 0.30 108.30 111.94 C C C O4' C1' N1 DT DT DT 4 4 4 N 1 8.17 1.20 119.70 127.87 C C C C3' O3' P DC DC DC 6 6 7 Y 1 4.01 0.30 108.30 112.31 C C C O4' C1' N1 DC DC DC 7 7 7 N 1 -5.46 0.80 102.40 96.94 C C C C3' C2' C1' DT DT DT 11 11 11 N 1 3.96 0.30 108.30 112.26 C C C O4' C1' N1 DT DT DT 11 11 11 N 1 1.84 0.30 108.30 110.14 C C C O4' C1' N1 DC DC DC 15 15 15 N 1 4.75 0.30 108.30 113.05 C C C O4' C1' N1 DC DC DC 16 16 16 N 1 -3.03 0.40 104.50 101.47 C C C O4' C4' C3' DC DC DC 17 17 17 N 1 2.75 0.30 108.30 111.05 C C C O4' C1' N9 DG DG DG 19 19 19 N 1 1.82 0.30 108.30 110.12 C C C O4' C1' N9 DG DG DG 20 20 20 N 1 4.95 0.30 108.30 113.25 C C C O4' C1' N9 DA DA DA 21 21 21 N 1 4.39 0.30 108.30 112.69 D D D O4' C1' N9 DA DA DA 22 22 22 N 1 2.28 0.30 108.30 110.58 D D D O4' C1' N1 DT DT DT 23 23 23 N 1 4.18 0.30 108.30 112.48 D D D O4' C1' N1 DC DC DC 24 24 24 N 1 4.33 0.30 108.30 112.63 D D D O4' C1' N9 DG DG DG 26 26 26 N 1 5.08 0.30 108.30 113.38 D D D O4' C1' N9 DG DG DG 27 27 27 N 1 2.62 0.30 108.30 110.92 D D D O4' C1' N9 DG DG DG 29 29 29 N 1 2.11 0.30 108.30 110.41 D D D O4' C1' N1 DT DT DT 31 31 31 N 1 4.57 0.30 108.30 112.87 D D D O4' C1' N1 DC DC DC 34 34 34 N 1 3.50 0.30 108.30 111.80 D D D O4' C1' N1 DT DT DT 36 36 36 N 1 -5.73 0.80 102.40 96.67 D D D C3' C2' C1' DC DC DC 39 39 39 N 1 3.66 0.30 108.30 111.96 D D D O4' C1' N1 DC DC DC 39 39 39 N 38.424 -1.08 .00 -.01 .33 .00 .73 .935 .920 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.25448 0.22206 0.22424 2.19 34.88 1183 15927 6.9 89.09 9.875 .134 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MOLECULAR REPLACEMENT .246 .205 .80 .80 1.40 MAXIMUM LIKELIHOOD MASK 2.19 34.88 80 1893 21 854 938 .010 .021 1926 1.660 2.518 2756 4.870 5.000 112 30.250 22.000 50 13.987 15.000 197 17.408 15.000 15 .078 .200 295 .005 .020 1163 .180 .200 601 .296 .200 1185 .167 .200 110 .205 .200 45 .149 .200 9 .632 1.500 585 1.032 2.000 895 1.512 3.000 1817 2.440 4.500 1861 0.4 0.276 2.247 57 832 20 62.92 2.190 50.000 2HOT 18302 0.04 1 13.800 3.000 95.200 0.293 2.19 2.27 1 2.40 76.30 0.288 2.27 2.36 1 2.70 85.80 0.251 2.36 2.47 1 2.80 93.30 0.211 2.47 2.60 1 3.00 98.80 0.143 2.60 2.76 1 3.10 100.00 0.094 2.76 2.97 1 3.10 100.00 0.052 2.97 3.27 1 3.10 99.90 0.032 3.27 3.74 1 3.10 99.80 0.023 3.74 4.72 1 3.10 99.60 0.022 4.72 50.00 1 3.00 98.40 data reduction Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm DENZO package data scaling Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm SCALEPACK package refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data reduction HKL-2000 data scaling HKL-2000 Phage selected homeodomain bound to modified DNA 1 N N 2 N N 3 N N 3 N N 4 N N 5 N N 5 N N 6 N N 6 N N 6 N N 6 N N A SER 9 C SER 12 HELX_P A ASN 23 C ASN 26 1 1 15 A THR 27 C THR 30 HELX_P A GLY 39 C GLY 42 1 2 13 A ASN 41 C ASN 44 HELX_P A THR 60 C THR 63 1 3 20 B SER 9 D SER 12 HELX_P B ASN 21 D ASN 24 1 4 13 B THR 27 D THR 30 HELX_P B GLY 39 D GLY 42 1 5 13 B ASN 41 D ASN 44 HELX_P B SER 59 D SER 62 1 6 19 covale 1.451 none C DT 14 A C5 DT 14 1_555 C P2O 22 E C7 P2O 1_555 hydrog WATSON-CRICK C DT 2 A N3 DT 2 1_555 D DA 42 B N1 DA 21 1_555 hydrog WATSON-CRICK C DT 2 A O4 DT 2 1_555 D DA 42 B N6 DA 21 1_555 hydrog WATSON-CRICK C DT 3 A N3 DT 3 1_555 D DA 41 B N1 DA 20 1_555 hydrog WATSON-CRICK C DT 3 A O4 DT 3 1_555 D DA 41 B N6 DA 20 1_555 hydrog WATSON-CRICK C DT 4 A N3 DT 4 1_555 D DA 40 B N1 DA 19 1_555 hydrog WATSON-CRICK C DT 4 A O4 DT 4 1_555 D DA 40 B N6 DA 19 1_555 hydrog WATSON-CRICK C DG 5 A N1 DG 5 1_555 D DC 39 B N3 DC 18 1_555 hydrog WATSON-CRICK C DG 5 A N2 DG 5 1_555 D DC 39 B O2 DC 18 1_555 hydrog WATSON-CRICK C DG 5 A O6 DG 5 1_555 D DC 39 B N4 DC 18 1_555 hydrog WATSON-CRICK C DC 6 A N3 DC 6 1_555 D DG 38 B N1 DG 17 1_555 hydrog WATSON-CRICK C DC 6 A N4 DC 6 1_555 D DG 38 B O6 DG 17 1_555 hydrog WATSON-CRICK C DC 6 A O2 DC 6 1_555 D DG 38 B N2 DG 17 1_555 hydrog WATSON-CRICK C DC 7 A N3 DC 7 1_555 D DG 37 B N1 DG 16 1_555 hydrog WATSON-CRICK C DC 7 A N4 DC 7 1_555 D DG 37 B O6 DG 16 1_555 hydrog WATSON-CRICK C DC 7 A O2 DC 7 1_555 D DG 37 B N2 DG 16 1_555 hydrog WATSON-CRICK C DA 8 A N1 DA 8 1_555 D DT 36 B N3 DT 15 1_555 hydrog WATSON-CRICK C DA 8 A N6 DA 8 1_555 D DT 36 B O4 DT 15 1_555 hydrog WATSON-CRICK C DT 9 A N3 DT 9 1_555 D DA 35 B N1 DA 14 1_555 hydrog WATSON-CRICK C DT 9 A O4 DT 9 1_555 D DA 35 B N6 DA 14 1_555 hydrog WATSON-CRICK C DG 10 A N1 DG 10 1_555 D DC 34 B N3 DC 13 1_555 hydrog WATSON-CRICK C DG 10 A N2 DG 10 1_555 D DC 34 B O2 DC 13 1_555 hydrog WATSON-CRICK C DG 10 A O6 DG 10 1_555 D DC 34 B N4 DC 13 1_555 hydrog WATSON-CRICK C DT 11 A N3 DT 11 1_555 D DA 33 B N1 DA 12 1_555 hydrog WATSON-CRICK C DT 11 A O4 DT 11 1_555 D DA 33 B N6 DA 12 1_555 hydrog WATSON-CRICK C DA 12 A N1 DA 12 1_555 D DT 32 B N3 DT 11 1_555 hydrog WATSON-CRICK C DA 12 A N6 DA 12 1_555 D DT 32 B O4 DT 11 1_555 hydrog WATSON-CRICK C DA 13 A N1 DA 13 1_555 D DT 31 B N3 DT 10 1_555 hydrog WATSON-CRICK C DA 13 A N6 DA 13 1_555 D DT 31 B O4 DT 10 1_555 hydrog WATSON-CRICK C DT 14 A N3 DT 14 1_555 D DA 30 B N1 DA 9 1_555 hydrog WATSON-CRICK C DT 14 A O4 DT 14 1_555 D DA 30 B N6 DA 9 1_555 hydrog WATSON-CRICK C DC 15 A N3 DC 15 1_555 D DG 29 B N1 DG 8 1_555 hydrog WATSON-CRICK C DC 15 A N4 DC 15 1_555 D DG 29 B O6 DG 8 1_555 hydrog WATSON-CRICK C DC 15 A O2 DC 15 1_555 D DG 29 B N2 DG 8 1_555 hydrog WATSON-CRICK C DC 16 A N3 DC 16 1_555 D DG 28 B N1 DG 7 1_555 hydrog WATSON-CRICK C DC 16 A N4 DC 16 1_555 D DG 28 B O6 DG 7 1_555 hydrog WATSON-CRICK C DC 16 A O2 DC 16 1_555 D DG 28 B N2 DG 7 1_555 hydrog WATSON-CRICK C DC 17 A N3 DC 17 1_555 D DG 27 B N1 DG 6 1_555 hydrog WATSON-CRICK C DC 17 A N4 DC 17 1_555 D DG 27 B O6 DG 6 1_555 hydrog WATSON-CRICK C DC 17 A O2 DC 17 1_555 D DG 27 B N2 DG 6 1_555 hydrog WATSON-CRICK C DC 18 A N3 DC 18 1_555 D DG 26 B N1 DG 5 1_555 hydrog WATSON-CRICK C DC 18 A N4 DC 18 1_555 D DG 26 B O6 DG 5 1_555 hydrog WATSON-CRICK C DC 18 A O2 DC 18 1_555 D DG 26 B N2 DG 5 1_555 hydrog WATSON-CRICK C DG 19 A N1 DG 19 1_555 D DC 25 B N3 DC 4 1_555 hydrog WATSON-CRICK C DG 19 A N2 DG 19 1_555 D DC 25 B O2 DC 4 1_555 hydrog WATSON-CRICK C DG 19 A O6 DG 19 1_555 D DC 25 B N4 DC 4 1_555 hydrog WATSON-CRICK C DG 20 A N1 DG 20 1_555 D DC 24 B N3 DC 3 1_555 hydrog WATSON-CRICK C DG 20 A N2 DG 20 1_555 D DC 24 B O2 DC 3 1_555 hydrog WATSON-CRICK C DG 20 A O6 DG 20 1_555 D DC 24 B N4 DC 3 1_555 hydrog WATSON-CRICK C DA 21 A N1 DA 21 1_555 D DT 23 B N3 DT 2 1_555 hydrog WATSON-CRICK C DA 21 A N6 DA 21 1_555 D DT 23 B O4 DT 2 1_555 transcription/DNA Homeodomain, Phage display, transcription-DNA COMPLEX HMEN_DROME UNP 3 453 P02836 2HOT PDB 1 2HOT 2HOT PDB 2 2HOT 453 513 2HOT 0 60 P02836 A 1 3 63 453 513 2HOT 0 60 P02836 B 1 3 63 1 21 2HOT 1 21 2HOT C 2 1 21 22 42 2HOT 22 42 2HOT D 3 1 21 1 cloning artifact GLY -2 2HOT A P02836 UNP 1 1 cloning artifact SER -1 2HOT A P02836 UNP 2 1 ILE engineered mutation VAL 45 2HOT A P02836 UNP 498 48 1 ILE engineered mutation GLY 47 2HOT A P02836 UNP 500 50 1 GLN engineered mutation LYS 50 2HOT A P02836 UNP 503 53 1 LYS engineered mutation MET 52 2HOT A P02836 UNP 505 55 2 cloning artifact GLY -2 2HOT B P02836 UNP 1 2 cloning artifact SER -1 2HOT B P02836 UNP 2 2 ILE engineered mutation VAL 45 2HOT B P02836 UNP 498 48 2 ILE engineered mutation GLY 47 2HOT B P02836 UNP 500 50 2 GLN engineered mutation LYS 50 2HOT B P02836 UNP 503 53 2 LYS engineered mutation MET 52 2HOT B P02836 UNP 505 55 BINDING SITE FOR RESIDUE P2O C 22 C P2O 22 Software 6 BINDING SITE FOR RESIDUE GOL B 201 B GOL 201 Software 4 BINDING SITE FOR RESIDUE GOL B 202 B GOL 202 Software 7 A ALA 43 C ALA 46 6 1_555 A LYS 46 C LYS 49 6 1_555 A GLY 47 C GLY 50 6 1_555 A LYS 50 C LYS 53 6 1_555 C DA 13 A DA 13 6 1_555 C DT 14 A DT 14 6 1_555 B PHE 20 D PHE 23 4 4_547 B ASN 21 D ASN 24 4 4_547 B ARG 24 D ARG 27 4 4_547 B ASN 41 D ASN 44 4 1_555 B SER 9 D SER 12 7 1_555 B GLU 11 D GLU 14 7 1_555 B GLN 12 D GLN 15 7 1_555 B TYR 25 D TYR 28 7 4_547 B HOH 219 K HOH 7 1_555 C DC 18 A DC 18 7 4_547 C HOH 23 H HOH 7 4_547 5 C 1 2 1