0.009735 0.000000 0.000000 0.000000 0.009735 0.000000 0.000000 0.000000 0.018414 0.00000 0.00000 0.00000 Alam, S.L. Whitby, F.G. Hill, C.P. Sundquist, W.I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 102.727 102.727 54.306 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing US Nat.Struct.Mol.Biol. 1545-9993 13 1029 1030 10.1038/nsmb1160 17057716 Structural basis for ubiquitin recognition by the human ESCRT-II EAP45 GLUE domain. 2006 10.2210/pdb2hth/pdb pdb_00002hth CHIRALITY ERRORS AT RESIDUE B 35 100 1 mirrors CCD 2006-02-12 ADSC QUANTUM 315 Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 1.10000 1.0 0.97910 1.0 8.10 187787 0.123 1.01 3.100 50.000 12326 100.00 X29A NSLS 1.10000, 0.97910 SYNCHROTRON NSLS BEAMLINE X29A 8576.831 Ubiquitin 1 man polymer 16257.649 Vacuolar protein sorting protein 36 EAP45 Glue domain 1 man polymer ELL-associated protein of 45 kDa no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG A polypeptide(L) no no GHMDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGIGK SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQRRWENMPVSQ GHMDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGIGK SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQRRWENMPVSQ B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample RPS27A, UBA52, UBB, UBC 9606 Homo sapiens 562 Escherichia coli BL21(DE3) RIPL codon Plus plasmid pet3d human Homo Escherichia sample VPS36, C13orf9, EAP45 9606 Homo sapiens 562 Escherichia coli BL21(DE3) RIPL codon plus plasmid pGEX2T 1 2.91 57.68 VAPOR DIFFUSION, HANGING DROP 7.5 10% PEG8000; 10% Ethylene glycol; 100mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 pdbx_unobs_or_zero_occ_residues software chem_comp_atom chem_comp_bond database_2 pdbx_unobs_or_zero_occ_residues struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Advisory Refinement description Advisory Data collection Database references 1 0 2006-10-24 1 1 2008-05-01 1 2 2011-07-13 1 3 2017-10-18 1 4 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details 2CAY IS THE CRYSTAL STRUCTURE OF VPS36 N-TERMINAL PH DOMAIN AT 1.90 ANGSTROM RESOLUTION RCSB Y RCSB 2006-07-25 REL REL 0.085 1.023 99.90 0.102 0.879 99.90 0.105 1.065 100.00 0.111 1.085 100.00 0.139 1.392 100.00 0.152 1.408 100.00 0.205 1.072 100.00 0.254 0.876 100.00 0.376 0.685 100.00 0.530 0.586 100.00 Sm 60.000 0.481 0.168 0.073 0.331 Sm 55.643 0.812 0.287 0.230 0.235 0.710 0.730 0.660 5648 4418 1230 0.930 0.970 0.900 286 147 139 0.830 0.870 0.740 793 553 240 0.800 0.840 0.670 944 731 213 0.810 0.830 0.740 955 762 193 0.670 0.690 0.560 1648 1367 281 0.460 0.470 0.400 1022 858 164 MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A VAL 5 n 5 VAL 5 A LYS 6 n 6 LYS 6 A THR 7 n 7 THR 7 A LEU 8 n 8 LEU 8 A THR 9 n 9 THR 9 A GLY 10 n 10 GLY 10 A LYS 11 n 11 LYS 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A THR 14 n 14 THR 14 A LEU 15 n 15 LEU 15 A GLU 16 n 16 GLU 16 A VAL 17 n 17 VAL 17 A GLU 18 n 18 GLU 18 A PRO 19 n 19 PRO 19 A SER 20 n 20 SER 20 A ASP 21 n 21 ASP 21 A THR 22 n 22 THR 22 A ILE 23 n 23 ILE 23 A GLU 24 n 24 GLU 24 A ASN 25 n 25 ASN 25 A VAL 26 n 26 VAL 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A LYS 29 n 29 LYS 29 A ILE 30 n 30 ILE 30 A GLN 31 n 31 GLN 31 A ASP 32 n 32 ASP 32 A LYS 33 n 33 LYS 33 A GLU 34 n 34 GLU 34 A GLY 35 n 35 GLY 35 A ILE 36 n 36 ILE 36 A PRO 37 n 37 PRO 37 A PRO 38 n 38 PRO 38 A ASP 39 n 39 ASP 39 A GLN 40 n 40 GLN 40 A GLN 41 n 41 GLN 41 A ARG 42 n 42 ARG 42 A LEU 43 n 43 LEU 43 A ILE 44 n 44 ILE 44 A PHE 45 n 45 PHE 45 A ALA 46 n 46 ALA 46 A GLY 47 n 47 GLY 47 A LYS 48 n 48 LYS 48 A GLN 49 n 49 GLN 49 A LEU 50 n 50 LEU 50 A GLU 51 n 51 GLU 51 A ASP 52 n 52 ASP 52 A GLY 53 n 53 GLY 53 A ARG 54 n 54 ARG 54 A THR 55 n 55 THR 55 A LEU 56 n 56 LEU 56 A SER 57 n 57 SER 57 A ASP 58 n 58 ASP 58 A TYR 59 n 59 TYR 59 A ASN 60 n 60 ASN 60 A ILE 61 n 61 ILE 61 A GLN 62 n 62 GLN 62 A LYS 63 n 63 LYS 63 A GLU 64 n 64 GLU 64 A SER 65 n 65 SER 65 A THR 66 n 66 THR 66 A LEU 67 n 67 LEU 67 A HIS 68 n 68 HIS 68 A LEU 69 n 69 LEU 69 A VAL 70 n 70 VAL 70 A LEU 71 n 71 LEU 71 A ARG 72 n 72 ARG 72 A LEU 73 n 73 LEU 73 A n 74 74 A n 75 75 A n 76 76 A n 1 -1 B n 2 0 B n 3 1 B n 4 2 B ARG 3 n 5 ARG 3 B PHE 4 n 6 PHE 4 B VAL 5 n 7 VAL 5 B TRP 6 n 8 TRP 6 B THR 7 n 9 THR 7 B SER 8 n 10 SER 8 B GLY 9 n 11 GLY 9 B LEU 10 n 12 LEU 10 B LEU 11 n 13 LEU 11 B GLU 12 n 14 GLU 12 B ILE 13 n 15 ILE 13 B ASN 14 n 16 ASN 14 B GLU 15 n 17 GLU 15 B THR 16 n 18 THR 16 B LEU 17 n 19 LEU 17 B VAL 18 n 20 VAL 18 B ILE 19 n 21 ILE 19 B GLN 20 n 22 GLN 20 B GLN 21 n 23 GLN 21 B ARG 22 n 24 ARG 22 B GLY 23 n 25 GLY 23 B VAL 24 n 26 VAL 24 B ARG 25 n 27 ARG 25 B ILE 26 n 28 ILE 26 B TYR 27 n 29 TYR 27 B ASP 28 n 30 ASP 28 B GLY 29 n 31 GLY 29 B GLU 30 n 32 GLU 30 B GLU 31 n 33 GLU 31 B LYS 32 n 34 LYS 32 B ILE 33 n 35 ILE 33 B LYS 34 n 36 LYS 34 B PHE 35 n 37 PHE 35 B ASP 36 n 38 ASP 36 B ALA 37 n 39 ALA 37 B GLY 38 n 40 GLY 38 B THR 39 n 41 THR 39 B LEU 40 n 42 LEU 40 B LEU 41 n 43 LEU 41 B LEU 42 n 44 LEU 42 B SER 43 n 45 SER 43 B THR 44 n 46 THR 44 B HIS 45 n 47 HIS 45 B ARG 46 n 48 ARG 46 B LEU 47 n 49 LEU 47 B ILE 48 n 50 ILE 48 B TRP 49 n 51 TRP 49 B ARG 50 n 52 ARG 50 B ASP 51 n 53 ASP 51 B GLN 52 n 54 GLN 52 B LYS 53 n 55 LYS 53 B ASN 54 n 56 ASN 54 B HIS 55 n 57 HIS 55 B GLU 56 n 58 GLU 56 B CYS 57 n 59 CYS 57 B CYS 58 n 60 CYS 58 B MET 59 n 61 MET 59 B ALA 60 n 62 ALA 60 B ILE 61 n 63 ILE 61 B LEU 62 n 64 LEU 62 B LEU 63 n 65 LEU 63 B SER 64 n 66 SER 64 B GLN 65 n 67 GLN 65 B ILE 66 n 68 ILE 66 B VAL 67 n 69 VAL 67 B PHE 68 n 70 PHE 68 B ILE 69 n 71 ILE 69 B GLU 70 n 72 GLU 70 B GLU 71 n 73 GLU 71 B GLN 72 n 74 GLN 72 B ALA 73 n 75 ALA 73 B ALA 74 n 76 ALA 74 B GLY 75 n 77 GLY 75 B ILE 76 n 78 ILE 76 B GLY 77 n 79 GLY 77 B LYS 78 n 80 LYS 78 B SER 79 n 81 SER 79 B ALA 80 n 82 ALA 80 B LYS 81 n 83 LYS 81 B ILE 82 n 84 ILE 82 B VAL 83 n 85 VAL 83 B VAL 84 n 86 VAL 84 B HIS 85 n 87 HIS 85 B LEU 86 n 88 LEU 86 B HIS 87 n 89 HIS 87 B PRO 88 n 90 PRO 88 B ALA 89 n 91 ALA 89 B PRO 90 n 92 PRO 90 B PRO 91 n 93 PRO 91 B ASN 92 n 94 ASN 92 B LYS 93 n 95 LYS 93 B GLU 94 n 96 GLU 94 B PRO 95 n 97 PRO 95 B GLY 96 n 98 GLY 96 B PRO 97 n 99 PRO 97 B PHE 98 n 100 PHE 98 B GLN 99 n 101 GLN 99 B SER 100 n 102 SER 100 B SER 101 n 103 SER 101 B LYS 102 n 104 LYS 102 B ASN 103 n 105 ASN 103 B SER 104 n 106 SER 104 B TYR 105 n 107 TYR 105 B ILE 106 n 108 ILE 106 B LYS 107 n 109 LYS 107 B LEU 108 n 110 LEU 108 B SER 109 n 111 SER 109 B PHE 110 n 112 PHE 110 B LYS 111 n 113 LYS 111 B GLU 112 n 114 GLU 112 B HIS 113 n 115 HIS 113 B GLY 114 n 116 GLY 114 B GLN 115 n 117 GLN 115 B ILE 116 n 118 ILE 116 B GLU 117 n 119 GLU 117 B PHE 118 n 120 PHE 118 B TYR 119 n 121 TYR 119 B ARG 120 n 122 ARG 120 B ARG 121 n 123 ARG 121 B LEU 122 n 124 LEU 122 B SER 123 n 125 SER 123 B GLU 124 n 126 GLU 124 B GLU 125 n 127 GLU 125 B MET 126 n 128 MET 126 B THR 127 n 129 THR 127 B GLN 128 n 130 GLN 128 B ARG 129 n 131 ARG 129 B ARG 130 n 132 ARG 130 B TRP 131 n 133 TRP 131 B n 134 132 B n 135 133 B n 136 134 B n 137 135 B n 138 136 B n 139 137 B n 140 138 B 19.6340 -16.9771 17.2776 48.4984 -33.2837 31.7127 0.4256 1.1251 0.3466 -2.0371 0.1549 0.0719 0.5117 -0.5583 -0.5804 0.1442 -0.0561 0.1675 0.3623 0.0000 0.6009 refined -5.3993 -25.0366 -25.8532 X-RAY DIFFRACTION 11.1428 3.0065 1.7129 23.5500 -2.6671 7.9247 -0.0635 0.7222 1.6764 -0.2905 0.3520 0.4973 -0.8265 -0.4311 -0.2885 0.1873 0.0437 0.1834 0.3439 0.0607 0.6380 refined -4.9871 -18.8278 -22.1207 X-RAY DIFFRACTION 10.6110 -4.9379 -2.2412 10.8899 -6.0097 12.4347 -0.6711 -0.5165 0.7323 1.0050 0.9580 0.2475 -0.6627 -0.6338 -0.2869 0.1711 -0.0085 0.1243 0.1263 0.0068 0.6151 refined -4.5547 -22.1567 -14.1221 X-RAY DIFFRACTION 14.7253 -12.0584 -12.7211 16.9704 8.7893 54.8173 -0.3704 -1.2615 1.5901 0.6208 0.9662 -0.1425 -0.9035 2.3249 -0.5958 0.1854 -0.1288 -0.0359 0.3860 -0.0789 0.8471 refined 4.7190 -24.0905 -16.9787 X-RAY DIFFRACTION 19.7679 -0.8298 4.0061 14.4189 -3.1264 1.4202 -0.5057 1.2566 1.0785 -0.8916 -0.2060 -0.7966 -0.7334 1.0542 0.7118 0.3623 -0.1263 0.1596 0.3249 0.1550 0.7623 refined 6.7290 -17.3533 -25.1469 X-RAY DIFFRACTION 9.4800 -4.4440 1.2532 11.2689 -5.8792 7.6055 0.3157 1.2911 0.7637 -0.7296 -0.5377 -0.3306 -0.3848 0.3145 0.2220 0.1396 -0.0147 0.1327 0.2709 0.0627 0.5364 refined 1.0983 -20.9967 -26.2825 X-RAY DIFFRACTION 5.9458 -0.1076 -1.8299 6.8719 4.2756 11.2208 -0.1844 -0.1297 -0.5964 0.3415 -0.3363 0.2974 0.4668 -0.4607 0.5207 0.2069 -0.0006 0.0157 0.1302 0.0043 0.6369 refined 18.3435 -43.9012 -33.3588 X-RAY DIFFRACTION 7.9222 -0.0113 -1.2208 8.6676 7.6621 6.9583 -0.5329 -0.4755 -0.7273 1.1487 0.5099 -0.1685 0.9604 -0.2136 0.0229 0.2665 0.0373 -0.0031 0.1906 0.0089 0.6573 refined 18.3896 -42.1190 -29.7728 X-RAY DIFFRACTION 4.0699 -0.2853 -0.7193 6.3016 4.4173 5.3232 -0.1245 -0.4479 -0.5231 0.4937 0.0356 -0.1142 0.7660 0.1438 0.0889 0.1617 -0.0435 0.0765 0.2586 0.0714 0.5299 refined 15.7534 -39.4118 -27.1543 X-RAY DIFFRACTION 13.7454 -9.2369 -4.3611 7.8278 2.9229 9.6719 0.3480 0.1735 -1.1805 0.0254 -0.2911 0.7587 0.3725 -0.9308 -0.0569 0.2663 -0.0590 0.0605 0.2199 0.0465 0.6263 refined 11.9839 -37.3920 -22.1819 X-RAY DIFFRACTION 12.7785 3.2136 -1.0869 20.1873 -2.2771 2.7771 -0.3526 -0.6829 -0.2631 0.9876 0.0945 -1.1637 0.1107 0.5612 0.2581 0.1396 0.0657 -0.0364 0.2017 -0.0131 0.4271 refined 25.2430 -33.6986 -26.2715 X-RAY DIFFRACTION 29.7743 -4.2892 8.2628 8.3266 -12.7165 19.5273 -0.6613 0.7767 0.1505 -1.1114 0.7561 0.9383 0.6111 -0.4472 -0.0948 0.1483 -0.0171 -0.1132 0.1884 0.0252 0.6013 refined 14.3316 -29.3624 -36.3050 X-RAY DIFFRACTION A 1 A 1 A 8 A 8 X-RAY DIFFRACTION 1 A 9 A 9 A 26 A 26 X-RAY DIFFRACTION 2 A 27 A 27 A 38 A 38 X-RAY DIFFRACTION 3 A 39 A 39 A 44 A 44 X-RAY DIFFRACTION 4 A 45 A 45 A 55 A 55 X-RAY DIFFRACTION 5 A 56 A 56 A 73 A 73 X-RAY DIFFRACTION 6 B 5 B 7 B 29 B 31 X-RAY DIFFRACTION 7 B 30 B 32 B 47 B 49 X-RAY DIFFRACTION 8 B 48 B 50 B 83 B 85 X-RAY DIFFRACTION 9 B 84 B 86 B 112 B 114 X-RAY DIFFRACTION 10 B 113 B 115 B 124 B 126 X-RAY DIFFRACTION 11 B 125 B 127 B 131 B 133 X-RAY DIFFRACTION 12 author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 13 A O ILE 13 A N VAL 5 A N VAL 5 A N PHE 4 A N PHE 4 A O LEU 67 A O LEU 67 A O HIS 68 A O HIS 68 A N ILE 44 A N ILE 44 A N PHE 45 A N PHE 45 A O LYS 48 A O LYS 48 B N VAL 5 B N VAL 7 B O ALA 60 B O ALA 62 B O MET 59 B O MET 61 B N TRP 49 B N TRP 51 B O ILE 48 B O ILE 50 B N LEU 41 B N LEU 43 B O GLY 38 B O GLY 40 B N VAL 24 B N VAL 26 B N ARG 25 B N ARG 27 B O SER 109 B O SER 111 B O LEU 108 B O LEU 110 B N ILE 82 B N ILE 84 B O VAL 83 B O VAL 85 B N GLU 70 B N GLU 72 1 A ARG 74 A ARG 74 1 Y 1 A GLY 75 A GLY 75 1 Y 1 A GLY 76 A GLY 76 1 Y 1 B GLY -1 B GLY 1 1 Y 1 B HIS 0 B HIS 2 1 Y 1 B MET 1 B MET 3 1 Y 1 B ASP 2 B ASP 4 1 Y 1 B LYS 32 B LYS 34 0 Y 1 B ILE 33 B ILE 35 0 Y 1 B LYS 34 B LYS 36 0 Y 1 B PHE 35 B PHE 37 0 Y 1 B ASP 36 B ASP 38 0 Y 1 B LYS 53 B LYS 55 0 Y 1 B ASN 54 B ASN 56 0 Y 1 B HIS 55 B HIS 57 0 Y 1 B GLU 56 B GLU 58 0 Y 1 B CYS 57 B CYS 59 0 Y 1 B ALA 74 B ALA 76 0 Y 1 B GLY 75 B GLY 77 0 Y 1 B ILE 76 B ILE 78 0 Y 1 B GLY 77 B GLY 79 0 Y 1 B LYS 78 B LYS 80 0 Y 1 B PRO 90 B PRO 92 0 Y 1 B PRO 91 B PRO 93 0 Y 1 B ASN 92 B ASN 94 0 Y 1 B LYS 93 B LYS 95 0 Y 1 B GLU 94 B GLU 96 0 Y 1 B PRO 95 B PRO 97 0 Y 1 B GLY 96 B GLY 98 0 Y 1 B PRO 97 B PRO 99 0 Y 1 B PHE 98 B PHE 100 0 Y 1 B GLN 99 B GLN 101 0 Y 1 B SER 100 B SER 102 0 Y 1 B SER 101 B SER 103 0 Y 1 B LYS 102 B LYS 104 0 Y 1 B ASN 103 B ASN 105 0 Y 1 B GLU 132 B GLU 134 1 Y 1 B ASN 133 B ASN 135 1 Y 1 B MET 134 B MET 136 1 Y 1 B PRO 135 B PRO 137 1 Y 1 B VAL 136 B VAL 138 1 Y 1 B SER 137 B SER 139 1 Y 1 B GLN 138 B GLN 140 1 Y 1 B CA PHE 35 WRONG HAND 1 B B O N ALA PRO 89 90 0.27 1 B B O CD ALA PRO 89 90 1.21 1 B B O N GLU LYS 31 32 1.22 1 B B O CA ALA PRO 89 90 1.52 1 B B O N ALA ALA 73 74 1.70 1 B B O CA GLU LYS 31 32 1.79 1 B GLU 31 53.11 1 B ASP 36 10.27 1 B CYS 57 12.49 1 B ALA 73 10.21 1 B ALA 89 82.65 1 B B GLU LYS 31 32 -143.63 1 B B LYS ILE 32 33 136.97 1 B B PHE ASP 35 36 -132.24 1 B B CYS CYS 57 58 40.21 1 B B ALA ALA 73 74 137.04 1 B B ALA PRO 89 90 149.47 1 B B PRO PRO 90 91 146.42 1 B B ASN SER 103 104 -132.37 1 B B C N ASN SER 103 104 1.04 1 -66.12 1.60 122.70 56.58 B B B O C N GLU GLU LYS 31 31 32 Y 1 31.59 2.20 117.20 148.79 B B B CA C N GLN GLN LYS 52 52 53 Y 1 -32.44 1.60 122.70 90.26 B B B O C N GLN GLN LYS 52 52 53 Y 1 21.89 2.50 121.70 143.59 B B B C N CA GLN LYS LYS 52 53 53 Y 1 36.74 2.20 117.20 153.94 B B B CA C N ALA ALA ALA 73 73 74 Y 1 -36.81 1.60 122.70 85.89 B B B O C N ALA ALA ALA 73 73 74 Y 1 -108.89 1.90 121.10 12.21 B B B O C N ALA ALA PRO 89 89 90 Y 1 12.12 1.50 119.30 131.42 B B B C N CA ALA PRO PRO 89 90 90 Y 1 -41.22 2.10 128.40 87.18 B B B C N CD ALA PRO PRO 89 90 90 Y 1 -21.56 2.10 128.40 106.84 B B B C N CD PRO PRO PRO 90 91 91 Y 1 15.31 2.20 117.20 132.51 B B B CA C N ASN ASN SER 103 103 104 Y 1 -16.08 1.60 122.70 106.62 B B B O C N ASN ASN SER 103 103 104 Y 1 19.89 2.50 121.70 141.59 B B B C N CA ASN SER SER 103 104 104 Y 1 B B C N CYS CYS 57 58 0.143 0.023 1.336 1.479 Y 1 B B C N ALA PRO 89 90 -0.137 0.019 1.338 1.201 Y 1 B B C N ASN SER 103 104 -0.294 0.023 1.336 1.042 Y 1 A ALA 46 49.08 -132.94 1 B GLU 31 -48.44 174.42 1 B LYS 32 166.96 20.17 1 B ILE 33 -171.77 40.43 1 B LYS 34 -167.49 108.25 1 B PHE 35 -164.20 -65.21 1 B ASN 54 62.13 -167.88 1 B HIS 55 78.21 85.07 1 B GLU 56 168.31 110.65 1 B CYS 57 78.30 116.53 1 B ILE 76 -106.14 48.10 1 B LYS 78 -133.70 -41.40 1 B ALA 89 -69.51 -143.76 1 B PRO 91 47.97 -154.97 1 B ASN 92 -115.76 75.78 1 B LYS 93 68.74 132.10 1 B GLU 94 115.22 -51.78 1 B PRO 95 -59.89 -76.32 1 B PRO 97 -99.80 -94.99 1 B SER 101 -100.37 44.05 1 B ASN 103 59.85 137.70 1 B SER 104 -150.55 33.17 1 B HIS 113 66.88 -161.23 1 B ARG 129 35.61 67.85 56.345 -1.73 0.00 0.00 -1.73 0.00 3.45 0.916 0.873 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. LOOP RESIDUES 32-36, 53-57, 74-78 AND 90-103 ARE SET AT ZERO OCCUPANCY. 0.28872 0.24775 0.25184 2.70 37.32 810 7426 9.8 97.73 13.718 0.280 RANDOM 1 THROUGHOUT 0.0 SAD 0.626 0.355 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 2.70 37.32 0 1640 0 0 1640 0.018 0.022 1436 1.681 1.953 1930 7.251 5.000 167 32.972 23.913 69 15.795 15.000 280 14.000 15.000 12 0.107 0.200 224 0.005 0.020 1038 0.201 0.200 518 0.317 0.200 937 0.148 0.200 33 0.199 0.200 12 1.032 1.500 877 1.814 2.000 1385 2.333 3.000 601 3.680 4.500 545 0.37 0.367 2.77 49 440 20 79.64 2.700 50.000 2HTH 8264 0.0 0.109 1 11.000 97.700 0.536 2.70 2.80 81.40 0.465 2.80 2.91 95.90 0.327 2.91 3.04 99.80 0.237 3.04 3.20 100.00 0.181 3.20 3.40 100.00 0.14 3.40 3.66 100.00 0.115 3.66 4.03 100.00 0.103 4.03 4.62 100.00 0.093 4.62 5.81 100.00 0.08 5.81 50.00 99.60 data reduction Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm DENZO package data scaling Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm SCALEPACK package phasing Tom Terwilliger terwilliger@LANL.gov 8-Jun-2005 http://www.solve.lanl.gov/ SOLVE package 2.10 phasing Terwilliger, T. C terwilliger@LANL.gov 09-Aug-2005 http://www.solve.lanl.gov/ RESOLVE package 2.10 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 Structural basis for ubiquitin recognition by the human EAP45/ESCRT-II GLUE domain 1 N N 2 N N A THR 22 A THR 22 HELX_P A GLY 35 A GLY 35 1 1 14 A PRO 37 A PRO 37 HELX_P A ASP 39 A ASP 39 5 2 3 B GLY 114 B GLY 116 HELX_P B ARG 129 B ARG 131 1 3 16 PROTEIN TRANSPORT GLUE domain, PH domain, Protein sorting, viral budding, Ubiquitin complex, PROTEIN TRANSPORT B LYS 34 B LYS 36 1 B PHE 35 B PHE 37 2.73 B HIS 55 B HIS 57 1 B GLU 56 B GLU 58 -11.07 B GLU 56 B GLU 58 1 B CYS 57 B CYS 59 -0.29 B PRO 91 B PRO 93 1 B ASN 92 B ASN 94 -0.22 B PRO 95 B PRO 97 1 B GLY 96 B GLY 98 -2.21 B GLY 96 B GLY 98 1 B PRO 97 B PRO 99 -10.84 UBIQ_HUMAN UNP 1 1 P62988 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG VPS36_HUMAN UNP 2 1 Q86VN1 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAAGIGKSA KIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQRRWENMPVSQ 1 76 2HTH 1 76 P62988 A 1 1 76 1 138 2HTH 1 138 Q86VN1 B 2 3 140 2 cloning artifact GLY -1 2HTH B Q86VN1 UNP 1 2 cloning artifact HIS 0 2HTH B Q86VN1 UNP 2 5 8 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 12 A THR 12 A GLU 16 A GLU 16 A GLN 2 A GLN 2 A LYS 6 A LYS 6 A THR 66 A THR 66 A LEU 71 A LEU 71 A GLN 41 A GLN 41 A PHE 45 A PHE 45 A LYS 48 A LYS 48 A GLN 49 A GLN 49 B VAL 5 B VAL 7 B TRP 6 B TRP 8 B MET 59 B MET 61 B LEU 62 B LEU 64 B ARG 46 B ARG 48 B ASP 51 B ASP 53 B GLY 38 B GLY 40 B SER 43 B SER 45 B LEU 17 B LEU 19 B ASP 28 B ASP 30 B TYR 105 B TYR 107 B PHE 110 B PHE 112 B LYS 81 B LYS 83 B LEU 86 B LEU 88 B ILE 66 B ILE 68 B GLN 72 B GLN 74 94 P 42 21 2