0.019512
0.000000
0.008929
0.000000
0.016617
0.000000
0.000000
0.000000
0.020375
0.00000
0.00000
0.00000
Mannino, C.
Nievo, M.
Machetti, F.
Papakyriakou, A.
Calderone, V.
Fragai, M.
Guarna, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
114.59
90.00
51.250
60.179
53.974
C20 H21 N3 O5
383.398
(1S,5S,7R)-N~7~-(BIPHENYL-4-YLMETHYL)-N~3~-HYDROXY-6,8-DIOXA-3-AZABICYCLO[3.2.1]OCTANE-3,7-DICARBOXAMIDE
(1S,5S,7R)-3-AZA-6,8-DIOXA-BICYCLO[3.2.1]OCTANE-3,7-DICARBOXYLIC ACID 7-[(BIPHENYL-4-YLMETHYL)-AMIDE]-3-HYDROXYAMIDE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C2 H5 N O2
75.067
ACETOHYDROXAMIC ACID
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
O
N
2
N
C
N
3
R
C
N
4
N
O
N
5
S
C
N
6
N
C
N
7
N
N
N
8
N
C
N
9
N
O
N
10
N
N
N
11
N
O
N
12
N
C
N
13
N
O
N
14
S
C
N
15
N
N
N
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
Y
26
N
C
Y
27
N
C
Y
28
N
C
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
N
N
51
S
C
N
52
N
C
N
53
N
O
N
54
N
C
N
55
N
O
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
N
N
64
S
C
N
65
N
C
N
66
N
O
N
67
N
C
N
68
N
C
N
69
N
C
N
70
N
N
N
71
N
C
N
72
N
N
N
73
N
N
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
N
N
91
S
C
N
92
N
C
N
93
N
O
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
S
C
N
109
N
C
N
110
N
O
N
111
N
C
N
112
N
C
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
CA
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
Y
188
N
C
Y
189
N
N
Y
190
N
C
Y
191
N
C
Y
192
N
N
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
N
N
208
S
C
N
209
N
C
N
210
N
O
N
211
S
C
N
212
N
C
N
213
N
C
N
214
N
C
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
N
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
C
N
282
N
S
N
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
C
N
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
O
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
R
C
N
355
N
O
N
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
N
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
N
405
N
O
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
N
N
419
S
C
N
420
N
C
N
421
N
O
N
422
N
C
N
423
N
C
N
424
N
C
N
425
N
O
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
ZN
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
doub
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
Y
31
N
sing
Y
32
N
doub
Y
33
N
sing
N
34
N
sing
Y
35
N
doub
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
Y
39
N
doub
N
40
N
sing
N
41
N
sing
Y
42
N
doub
Y
43
N
sing
Y
44
N
sing
N
45
N
sing
Y
46
N
doub
N
47
N
sing
Y
48
N
doub
N
49
N
sing
Y
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
sing
Y
189
N
doub
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
N
193
N
sing
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
Y
393
N
doub
Y
394
N
sing
Y
395
N
sing
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
doub
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
UK
Bioorg.Med.Chem.
BMECEP
1200
0968-0896
14
7392
7403
10.1016/j.bmc.2006.07.028
16899369
Synthesis of bicyclic molecular scaffolds (BTAa): an investigation towards new selective MMP-12 inhibitors.
2006
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
102
5334
5339
Conformational variability of matrix metalloproteinases: beyond a single 3D structure.
2005
10.2210/pdb2hu6/pdb
pdb_00002hu6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
Fixed exit double crystal Si [111], horizontally focusing
CCD
2005-07-26
MAR CCD 165 mm
Fixed exit double crystal Si [111], horizontally focusing
SINGLE WAVELENGTH
M
x-ray
1
0.93920
1.0
BW7A
EMBL/DESY, HAMBURG
0.93920
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE BW7A
17615.670
Macrophage metalloelastase
3.4.24.65
Catalytic Domain (residues 106-263)
F171D
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
40.078
CALCIUM ION
3
syn
non-polymer
383.398
(1S,5S,7R)-N~7~-(BIPHENYL-4-YLMETHYL)-N~3~-HYDROXY-6,8-DIOXA-3-AZABICYCLO[3.2.1]OCTANE-3,7-DICARBOXAMIDE
1
syn
non-polymer
75.067
ACETOHYDROXAMIC ACID
1
syn
non-polymer
18.015
water
256
nat
water
HME, Matrix metalloproteinase-12, MMP-12, Macrophage elastase, ME
no
no
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
MGPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA
FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
MMP12, HME
9606
Homo sapiens
511693
Escherichia coli BL21
BL21
plasmid
pET21
1
2.15
42.72
VAPOR DIFFUSION, SITTING DROP
8.0
0.1 M Tris-HCl, 30% PEG 6000, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
software
citation_author
database_2
diffrn_source
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Database references
Data collection
Database references
Derived calculations
Data collection
Refinement description
1
0
2006-12-19
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
1
4
2018-01-24
1
5
2021-10-20
1
6
2023-08-30
_software.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of the catalytic domain of human MMP12 complexed with acetohydroxamic acid at atomic resolution.
Crystal structure of the catalytic domain of human MMP12 complexed with the inhibitor NNGH at 1.3 A resolution.
RCSB
Y
RCSB
2006-07-26
REL
REL
ZN
ZINC ION
CA
CALCIUM ION
37A
(1S,5S,7R)-N~7~-(BIPHENYL-4-YLMETHYL)-N~3~-HYDROXY-6,8-DIOXA-3-AZABICYCLO[3.2.1]OCTANE-3,7-DICARBOXAMIDE
HAE
ACETOHYDROXAMIC ACID
HOH
water
1Y93
pdb entry 1Y93
PDB
experimental model
ZN
264
2
ZN
ZN
264
A
ZN
265
2
ZN
ZN
265
A
CA
266
3
CA
CA
266
A
CA
267
3
CA
CA
267
A
CA
268
3
CA
CA
268
A
UNK
0
4
37A
37A
400
A
PAH
269
5
HAE
HAE
269
A
HOH
1
6
HOH
HOH
401
A
HOH
2
6
HOH
HOH
402
A
HOH
3
6
HOH
HOH
403
A
HOH
4
6
HOH
HOH
404
A
HOH
5
6
HOH
HOH
405
A
HOH
6
6
HOH
HOH
406
A
HOH
7
6
HOH
HOH
407
A
HOH
8
6
HOH
HOH
408
A
HOH
9
6
HOH
HOH
409
A
HOH
10
6
HOH
HOH
410
A
HOH
11
6
HOH
HOH
411
A
HOH
12
6
HOH
HOH
412
A
HOH
13
6
HOH
HOH
413
A
HOH
14
6
HOH
HOH
414
A
HOH
15
6
HOH
HOH
415
A
HOH
16
6
HOH
HOH
416
A
HOH
17
6
HOH
HOH
417
A
HOH
18
6
HOH
HOH
418
A
HOH
19
6
HOH
HOH
419
A
HOH
20
6
HOH
HOH
420
A
HOH
21
6
HOH
HOH
421
A
HOH
22
6
HOH
HOH
422
A
HOH
23
6
HOH
HOH
423
A
HOH
24
6
HOH
HOH
424
A
HOH
25
6
HOH
HOH
425
A
HOH
26
6
HOH
HOH
426
A
HOH
27
6
HOH
HOH
427
A
HOH
28
6
HOH
HOH
428
A
HOH
29
6
HOH
HOH
429
A
HOH
30
6
HOH
HOH
430
A
HOH
31
6
HOH
HOH
431
A
HOH
33
6
HOH
HOH
432
A
HOH
34
6
HOH
HOH
433
A
HOH
35
6
HOH
HOH
434
A
HOH
36
6
HOH
HOH
435
A
HOH
38
6
HOH
HOH
436
A
HOH
39
6
HOH
HOH
437
A
HOH
40
6
HOH
HOH
438
A
HOH
41
6
HOH
HOH
439
A
HOH
42
6
HOH
HOH
440
A
HOH
43
6
HOH
HOH
441
A
HOH
44
6
HOH
HOH
442
A
HOH
45
6
HOH
HOH
443
A
HOH
46
6
HOH
HOH
444
A
HOH
47
6
HOH
HOH
445
A
HOH
48
6
HOH
HOH
446
A
HOH
49
6
HOH
HOH
447
A
HOH
50
6
HOH
HOH
448
A
HOH
51
6
HOH
HOH
449
A
HOH
52
6
HOH
HOH
450
A
HOH
53
6
HOH
HOH
451
A
HOH
54
6
HOH
HOH
452
A
HOH
55
6
HOH
HOH
453
A
HOH
56
6
HOH
HOH
454
A
HOH
57
6
HOH
HOH
455
A
HOH
58
6
HOH
HOH
456
A
HOH
59
6
HOH
HOH
457
A
HOH
60
6
HOH
HOH
458
A
HOH
61
6
HOH
HOH
459
A
HOH
62
6
HOH
HOH
460
A
HOH
63
6
HOH
HOH
461
A
HOH
64
6
HOH
HOH
462
A
HOH
65
6
HOH
HOH
463
A
HOH
66
6
HOH
HOH
464
A
HOH
67
6
HOH
HOH
465
A
HOH
68
6
HOH
HOH
466
A
HOH
69
6
HOH
HOH
467
A
HOH
70
6
HOH
HOH
468
A
HOH
71
6
HOH
HOH
469
A
HOH
72
6
HOH
HOH
470
A
HOH
73
6
HOH
HOH
471
A
HOH
74
6
HOH
HOH
472
A
HOH
75
6
HOH
HOH
473
A
HOH
76
6
HOH
HOH
474
A
HOH
77
6
HOH
HOH
475
A
HOH
78
6
HOH
HOH
476
A
HOH
79
6
HOH
HOH
477
A
HOH
80
6
HOH
HOH
478
A
HOH
81
6
HOH
HOH
479
A
HOH
82
6
HOH
HOH
480
A
HOH
83
6
HOH
HOH
481
A
HOH
84
6
HOH
HOH
482
A
HOH
85
6
HOH
HOH
483
A
HOH
86
6
HOH
HOH
484
A
HOH
87
6
HOH
HOH
485
A
HOH
88
6
HOH
HOH
486
A
HOH
90
6
HOH
HOH
487
A
HOH
92
6
HOH
HOH
488
A
HOH
93
6
HOH
HOH
489
A
HOH
94
6
HOH
HOH
490
A
HOH
95
6
HOH
HOH
491
A
HOH
96
6
HOH
HOH
492
A
HOH
97
6
HOH
HOH
493
A
HOH
98
6
HOH
HOH
494
A
HOH
99
6
HOH
HOH
495
A
HOH
100
6
HOH
HOH
496
A
HOH
101
6
HOH
HOH
497
A
HOH
102
6
HOH
HOH
498
A
HOH
103
6
HOH
HOH
499
A
HOH
104
6
HOH
HOH
500
A
HOH
105
6
HOH
HOH
501
A
HOH
106
6
HOH
HOH
502
A
HOH
107
6
HOH
HOH
503
A
HOH
108
6
HOH
HOH
504
A
HOH
109
6
HOH
HOH
505
A
HOH
110
6
HOH
HOH
506
A
HOH
111
6
HOH
HOH
507
A
HOH
112
6
HOH
HOH
508
A
HOH
113
6
HOH
HOH
509
A
HOH
114
6
HOH
HOH
510
A
HOH
115
6
HOH
HOH
511
A
HOH
116
6
HOH
HOH
512
A
HOH
117
6
HOH
HOH
513
A
HOH
118
6
HOH
HOH
514
A
HOH
119
6
HOH
HOH
515
A
HOH
120
6
HOH
HOH
516
A
HOH
121
6
HOH
HOH
517
A
HOH
122
6
HOH
HOH
518
A
HOH
123
6
HOH
HOH
519
A
HOH
124
6
HOH
HOH
520
A
HOH
125
6
HOH
HOH
521
A
HOH
127
6
HOH
HOH
522
A
HOH
128
6
HOH
HOH
523
A
HOH
129
6
HOH
HOH
524
A
HOH
130
6
HOH
HOH
525
A
HOH
131
6
HOH
HOH
526
A
HOH
132
6
HOH
HOH
527
A
HOH
133
6
HOH
HOH
528
A
HOH
134
6
HOH
HOH
529
A
HOH
135
6
HOH
HOH
530
A
HOH
136
6
HOH
HOH
531
A
HOH
137
6
HOH
HOH
532
A
HOH
138
6
HOH
HOH
533
A
HOH
139
6
HOH
HOH
534
A
HOH
140
6
HOH
HOH
535
A
HOH
141
6
HOH
HOH
536
A
HOH
142
6
HOH
HOH
537
A
HOH
143
6
HOH
HOH
538
A
HOH
144
6
HOH
HOH
539
A
HOH
145
6
HOH
HOH
540
A
HOH
146
6
HOH
HOH
541
A
HOH
148
6
HOH
HOH
542
A
HOH
149
6
HOH
HOH
543
A
HOH
150
6
HOH
HOH
544
A
HOH
151
6
HOH
HOH
545
A
HOH
152
6
HOH
HOH
546
A
HOH
153
6
HOH
HOH
547
A
HOH
154
6
HOH
HOH
548
A
HOH
156
6
HOH
HOH
549
A
HOH
157
6
HOH
HOH
550
A
HOH
158
6
HOH
HOH
551
A
HOH
159
6
HOH
HOH
552
A
HOH
160
6
HOH
HOH
553
A
HOH
161
6
HOH
HOH
554
A
HOH
162
6
HOH
HOH
555
A
HOH
163
6
HOH
HOH
556
A
HOH
164
6
HOH
HOH
557
A
HOH
165
6
HOH
HOH
558
A
HOH
166
6
HOH
HOH
559
A
HOH
167
6
HOH
HOH
560
A
HOH
168
6
HOH
HOH
561
A
HOH
169
6
HOH
HOH
562
A
HOH
170
6
HOH
HOH
563
A
HOH
171
6
HOH
HOH
564
A
HOH
173
6
HOH
HOH
565
A
HOH
174
6
HOH
HOH
566
A
HOH
175
6
HOH
HOH
567
A
HOH
177
6
HOH
HOH
568
A
HOH
178
6
HOH
HOH
569
A
HOH
179
6
HOH
HOH
570
A
HOH
180
6
HOH
HOH
571
A
HOH
181
6
HOH
HOH
572
A
HOH
182
6
HOH
HOH
573
A
HOH
183
6
HOH
HOH
574
A
HOH
184
6
HOH
HOH
575
A
HOH
185
6
HOH
HOH
576
A
HOH
186
6
HOH
HOH
577
A
HOH
187
6
HOH
HOH
578
A
HOH
188
6
HOH
HOH
579
A
HOH
189
6
HOH
HOH
580
A
HOH
190
6
HOH
HOH
581
A
HOH
191
6
HOH
HOH
582
A
HOH
192
6
HOH
HOH
583
A
HOH
193
6
HOH
HOH
584
A
HOH
194
6
HOH
HOH
585
A
HOH
196
6
HOH
HOH
586
A
HOH
197
6
HOH
HOH
587
A
HOH
198
6
HOH
HOH
588
A
HOH
199
6
HOH
HOH
589
A
HOH
200
6
HOH
HOH
590
A
HOH
201
6
HOH
HOH
591
A
HOH
202
6
HOH
HOH
592
A
HOH
203
6
HOH
HOH
593
A
HOH
204
6
HOH
HOH
594
A
HOH
205
6
HOH
HOH
595
A
HOH
206
6
HOH
HOH
596
A
HOH
207
6
HOH
HOH
597
A
HOH
208
6
HOH
HOH
598
A
HOH
209
6
HOH
HOH
599
A
HOH
211
6
HOH
HOH
600
A
HOH
213
6
HOH
HOH
601
A
HOH
215
6
HOH
HOH
602
A
HOH
216
6
HOH
HOH
603
A
HOH
217
6
HOH
HOH
604
A
HOH
219
6
HOH
HOH
605
A
HOH
220
6
HOH
HOH
606
A
HOH
221
6
HOH
HOH
607
A
HOH
222
6
HOH
HOH
608
A
HOH
223
6
HOH
HOH
609
A
HOH
226
6
HOH
HOH
610
A
HOH
227
6
HOH
HOH
611
A
HOH
228
6
HOH
HOH
612
A
HOH
229
6
HOH
HOH
613
A
HOH
230
6
HOH
HOH
614
A
HOH
231
6
HOH
HOH
615
A
HOH
232
6
HOH
HOH
616
A
HOH
234
6
HOH
HOH
617
A
HOH
238
6
HOH
HOH
618
A
HOH
239
6
HOH
HOH
619
A
HOH
241
6
HOH
HOH
620
A
HOH
242
6
HOH
HOH
621
A
HOH
244
6
HOH
HOH
622
A
HOH
246
6
HOH
HOH
623
A
HOH
248
6
HOH
HOH
624
A
HOH
249
6
HOH
HOH
625
A
HOH
251
6
HOH
HOH
626
A
HOH
252
6
HOH
HOH
627
A
HOH
254
6
HOH
HOH
628
A
HOH
255
6
HOH
HOH
629
A
HOH
256
6
HOH
HOH
630
A
HOH
258
6
HOH
HOH
631
A
HOH
259
6
HOH
HOH
632
A
HOH
260
6
HOH
HOH
633
A
HOH
261
6
HOH
HOH
634
A
HOH
262
6
HOH
HOH
635
A
HOH
263
6
HOH
HOH
636
A
HOH
264
6
HOH
HOH
637
A
HOH
268
6
HOH
HOH
638
A
HOH
269
6
HOH
HOH
639
A
HOH
270
6
HOH
HOH
640
A
HOH
276
6
HOH
HOH
641
A
HOH
278
6
HOH
HOH
642
A
HOH
280
6
HOH
HOH
643
A
HOH
281
6
HOH
HOH
644
A
HOH
282
6
HOH
HOH
645
A
HOH
285
6
HOH
HOH
646
A
HOH
286
6
HOH
HOH
647
A
HOH
288
6
HOH
HOH
648
A
HOH
289
6
HOH
HOH
649
A
HOH
293
6
HOH
HOH
650
A
HOH
300
6
HOH
HOH
651
A
HOH
301
6
HOH
HOH
652
A
HOH
302
6
HOH
HOH
653
A
HOH
303
6
HOH
HOH
654
A
HOH
304
6
HOH
HOH
655
A
HOH
305
6
HOH
HOH
656
A
n
1
105
A
GLY
106
n
2
GLY
106
A
PRO
107
n
3
PRO
107
A
VAL
108
n
4
VAL
108
A
TRP
109
n
5
TRP
109
A
ARG
110
n
6
ARG
110
A
LYS
111
n
7
LYS
111
A
HIS
112
n
8
HIS
112
A
TYR
113
n
9
TYR
113
A
ILE
114
n
10
ILE
114
A
THR
115
n
11
THR
115
A
TYR
116
n
12
TYR
116
A
ARG
117
n
13
ARG
117
A
ILE
118
n
14
ILE
118
A
ASN
119
n
15
ASN
119
A
ASN
120
n
16
ASN
120
A
TYR
121
n
17
TYR
121
A
THR
122
n
18
THR
122
A
PRO
123
n
19
PRO
123
A
ASP
124
n
20
ASP
124
A
MET
125
n
21
MET
125
A
ASN
126
n
22
ASN
126
A
ARG
127
n
23
ARG
127
A
GLU
128
n
24
GLU
128
A
ASP
129
n
25
ASP
129
A
VAL
130
n
26
VAL
130
A
ASP
131
n
27
ASP
131
A
TYR
132
n
28
TYR
132
A
ALA
133
n
29
ALA
133
A
ILE
134
n
30
ILE
134
A
ARG
135
n
31
ARG
135
A
LYS
136
n
32
LYS
136
A
ALA
137
n
33
ALA
137
A
PHE
138
n
34
PHE
138
A
GLN
139
n
35
GLN
139
A
VAL
140
n
36
VAL
140
A
TRP
141
n
37
TRP
141
A
SER
142
n
38
SER
142
A
ASN
143
n
39
ASN
143
A
VAL
144
n
40
VAL
144
A
THR
145
n
41
THR
145
A
PRO
146
n
42
PRO
146
A
LEU
147
n
43
LEU
147
A
LYS
148
n
44
LYS
148
A
PHE
149
n
45
PHE
149
A
SER
150
n
46
SER
150
A
LYS
151
n
47
LYS
151
A
ILE
152
n
48
ILE
152
A
ASN
153
n
49
ASN
153
A
THR
154
n
50
THR
154
A
GLY
155
n
51
GLY
155
A
MET
156
n
52
MET
156
A
ALA
157
n
53
ALA
157
A
ASP
158
n
54
ASP
158
A
ILE
159
n
55
ILE
159
A
LEU
160
n
56
LEU
160
A
VAL
161
n
57
VAL
161
A
VAL
162
n
58
VAL
162
A
PHE
163
n
59
PHE
163
A
ALA
164
n
60
ALA
164
A
ARG
165
n
61
ARG
165
A
GLY
166
n
62
GLY
166
A
ALA
167
n
63
ALA
167
A
HIS
168
n
64
HIS
168
A
GLY
169
n
65
GLY
169
A
ASP
170
n
66
ASP
170
A
ASP
171
n
67
ASP
171
A
HIS
172
n
68
HIS
172
A
ALA
173
n
69
ALA
173
A
PHE
174
n
70
PHE
174
A
ASP
175
n
71
ASP
175
A
GLY
176
n
72
GLY
176
A
LYS
177
n
73
LYS
177
A
GLY
178
n
74
GLY
178
A
GLY
179
n
75
GLY
179
A
ILE
180
n
76
ILE
180
A
LEU
181
n
77
LEU
181
A
ALA
182
n
78
ALA
182
A
HIS
183
n
79
HIS
183
A
ALA
184
n
80
ALA
184
A
PHE
185
n
81
PHE
185
A
GLY
186
n
82
GLY
186
A
PRO
187
n
83
PRO
187
A
GLY
188
n
84
GLY
188
A
SER
189
n
85
SER
189
A
GLY
190
n
86
GLY
190
A
ILE
191
n
87
ILE
191
A
GLY
192
n
88
GLY
192
A
GLY
193
n
89
GLY
193
A
ASP
194
n
90
ASP
194
A
ALA
195
n
91
ALA
195
A
HIS
196
n
92
HIS
196
A
PHE
197
n
93
PHE
197
A
ASP
198
n
94
ASP
198
A
GLU
199
n
95
GLU
199
A
ASP
200
n
96
ASP
200
A
GLU
201
n
97
GLU
201
A
PHE
202
n
98
PHE
202
A
TRP
203
n
99
TRP
203
A
THR
204
n
100
THR
204
A
THR
205
n
101
THR
205
A
HIS
206
n
102
HIS
206
A
SER
207
n
103
SER
207
A
GLY
208
n
104
GLY
208
A
GLY
209
n
105
GLY
209
A
THR
210
n
106
THR
210
A
ASN
211
n
107
ASN
211
A
LEU
212
n
108
LEU
212
A
PHE
213
n
109
PHE
213
A
LEU
214
n
110
LEU
214
A
THR
215
n
111
THR
215
A
ALA
216
n
112
ALA
216
A
VAL
217
n
113
VAL
217
A
HIS
218
n
114
HIS
218
A
GLU
219
n
115
GLU
219
A
ILE
220
n
116
ILE
220
A
GLY
221
n
117
GLY
221
A
HIS
222
n
118
HIS
222
A
SER
223
n
119
SER
223
A
LEU
224
n
120
LEU
224
A
GLY
225
n
121
GLY
225
A
LEU
226
n
122
LEU
226
A
GLY
227
n
123
GLY
227
A
HIS
228
n
124
HIS
228
A
SER
229
n
125
SER
229
A
SER
230
n
126
SER
230
A
ASP
231
n
127
ASP
231
A
PRO
232
n
128
PRO
232
A
LYS
233
n
129
LYS
233
A
ALA
234
n
130
ALA
234
A
VAL
235
n
131
VAL
235
A
MET
236
n
132
MET
236
A
PHE
237
n
133
PHE
237
A
PRO
238
n
134
PRO
238
A
THR
239
n
135
THR
239
A
TYR
240
n
136
TYR
240
A
LYS
241
n
137
LYS
241
A
TYR
242
n
138
TYR
242
A
VAL
243
n
139
VAL
243
A
ASP
244
n
140
ASP
244
A
ILE
245
n
141
ILE
245
A
ASN
246
n
142
ASN
246
A
THR
247
n
143
THR
247
A
PHE
248
n
144
PHE
248
A
ARG
249
n
145
ARG
249
A
LEU
250
n
146
LEU
250
A
SER
251
n
147
SER
251
A
ALA
252
n
148
ALA
252
A
ASP
253
n
149
ASP
253
A
ASP
254
n
150
ASP
254
A
ILE
255
n
151
ILE
255
A
ARG
256
n
152
ARG
256
A
GLY
257
n
153
GLY
257
A
ILE
258
n
154
ILE
258
A
GLN
259
n
155
GLN
259
A
SER
260
n
156
SER
260
A
LEU
261
n
157
LEU
261
A
TYR
262
n
158
TYR
262
A
GLY
263
n
159
GLY
263
A
author_defined_assembly
1
monomeric
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
ASP
124
A
OD2
ASP
20
1_555
51.9
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
162.6
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
O
GLU
95
1_555
137.7
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
86.1
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
85.6
A
GLU
199
A
O
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
199
A
OE2
GLU
95
1_555
81.1
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
120.8
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
75.5
A
GLU
199
A
O
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
76.0
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
A
GLU
201
A
O
GLU
97
1_555
118.0
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
HOH
410
I
O
HOH
1_555
85.0
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
HOH
410
I
O
HOH
1_555
136.6
A
GLU
199
A
O
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
A
HOH
410
I
O
HOH
1_555
82.5
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
A
HOH
410
I
O
HOH
1_555
86.4
A
GLU
201
A
O
GLU
97
1_555
A
CA
267
E
CA
CA
1_555
A
HOH
410
I
O
HOH
1_555
143.7
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
HOH
428
I
O
HOH
1_555
89.2
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
A
HOH
428
I
O
HOH
1_555
103.4
A
GLU
199
A
O
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
A
HOH
428
I
O
HOH
1_555
100.0
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
A
HOH
428
I
O
HOH
1_555
164.1
A
GLU
201
A
O
GLU
97
1_555
A
CA
267
E
CA
CA
1_555
A
HOH
428
I
O
HOH
1_555
77.4
A
HOH
410
I
O
HOH
1_555
A
CA
267
E
CA
CA
1_555
A
HOH
428
I
O
HOH
1_555
78.0
A
ASP
158
A
O
ASP
54
1_555
A
CA
266
D
CA
CA
1_555
A
GLY
190
A
O
GLY
86
1_555
164.8
A
ASP
158
A
O
ASP
54
1_555
A
CA
266
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
83.8
A
GLY
190
A
O
GLY
86
1_555
A
CA
266
D
CA
CA
1_555
A
GLY
192
A
O
GLY
88
1_555
97.0
A
ASP
158
A
O
ASP
54
1_555
A
CA
266
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
90.4
A
GLY
190
A
O
GLY
86
1_555
A
CA
266
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
104.7
A
GLY
192
A
O
GLY
88
1_555
A
CA
266
D
CA
CA
1_555
A
ASP
194
A
OD2
ASP
90
1_555
92.5
A
ASP
158
A
O
ASP
54
1_555
A
CA
266
D
CA
CA
1_555
A
HOH
405
I
O
HOH
1_555
81.1
A
GLY
190
A
O
GLY
86
1_555
A
CA
266
D
CA
CA
1_555
A
HOH
405
I
O
HOH
1_555
84.3
A
GLY
192
A
O
GLY
88
1_555
A
CA
266
D
CA
CA
1_555
A
HOH
405
I
O
HOH
1_555
76.2
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
266
D
CA
CA
1_555
A
HOH
405
I
O
HOH
1_555
166.5
A
ASP
158
A
O
ASP
54
1_555
A
CA
266
D
CA
CA
1_555
A
HOH
470
I
O
HOH
1_555
93.8
A
GLY
190
A
O
GLY
86
1_555
A
CA
266
D
CA
CA
1_555
A
HOH
470
I
O
HOH
1_555
83.2
A
GLY
192
A
O
GLY
88
1_555
A
CA
266
D
CA
CA
1_555
A
HOH
470
I
O
HOH
1_555
171.6
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
266
D
CA
CA
1_555
A
HOH
470
I
O
HOH
1_555
95.6
A
HOH
405
I
O
HOH
1_555
A
CA
266
D
CA
CA
1_555
A
HOH
470
I
O
HOH
1_555
95.5
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
A
ASP
170
A
OD2
ASP
66
1_555
109.6
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
117.3
A
ASP
170
A
OD2
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
183
A
NE2
HIS
79
1_555
112.5
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
107.3
A
ASP
170
A
OD2
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
95.6
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
265
C
ZN
ZN
1_555
A
HIS
196
A
ND1
HIS
92
1_555
112.3
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
268
F
CA
CA
1_555
A
GLY
176
A
O
GLY
72
1_555
86.7
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
268
F
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
86.5
A
GLY
176
A
O
GLY
72
1_555
A
CA
268
F
CA
CA
1_555
A
GLY
178
A
O
GLY
74
1_555
87.1
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
268
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
90.4
A
GLY
176
A
O
GLY
72
1_555
A
CA
268
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
177.0
A
GLY
178
A
O
GLY
74
1_555
A
CA
268
F
CA
CA
1_555
A
ILE
180
A
O
ILE
76
1_555
92.5
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
93.1
A
GLY
176
A
O
GLY
72
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
88.6
A
GLY
178
A
O
GLY
74
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
175.7
A
ILE
180
A
O
ILE
76
1_555
A
CA
268
F
CA
CA
1_555
A
ASP
198
A
OD1
ASP
94
1_555
91.8
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
268
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
175.7
A
GLY
176
A
O
GLY
72
1_555
A
CA
268
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
94.4
A
GLY
178
A
O
GLY
74
1_555
A
CA
268
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
89.4
A
ILE
180
A
O
ILE
76
1_555
A
CA
268
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
88.5
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
268
F
CA
CA
1_555
A
GLU
201
A
OE2
GLU
97
1_555
91.0
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HIS
222
A
NE2
HIS
118
1_555
95.7
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
101.1
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HIS
228
A
NE2
HIS
124
1_555
96.8
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
269
H
O2
HAE
1_555
153.3
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
269
H
O2
HAE
1_555
108.7
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
269
H
O2
HAE
1_555
87.0
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
269
H
O
HAE
1_555
96.5
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
269
H
O
HAE
1_555
95.7
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
269
H
O
HAE
1_555
157.3
A
HAE
269
H
O2
HAE
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HAE
269
H
O
HAE
1_555
71.1
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HOH
655
I
O
HOH
1_555
80.7
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HOH
655
I
O
HOH
1_555
169.2
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HOH
655
I
O
HOH
1_555
74.0
A
HAE
269
H
O2
HAE
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HOH
655
I
O
HOH
1_555
77.1
A
HAE
269
H
O
HAE
1_555
A
ZN
264
B
ZN
ZN
1_555
A
HOH
655
I
O
HOH
1_555
94.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LYS
148
A
O
LYS
44
A
N
ILE
114
A
N
ILE
10
A
N
ARG
117
A
N
ARG
13
A
O
VAL
161
A
O
VAL
57
A
N
VAL
162
A
N
VAL
58
A
O
PHE
197
A
O
PHE
93
A
O
HIS
196
A
O
HIS
92
A
N
HIS
183
A
N
HIS
79
A
N
THR
204
A
N
THR
100
A
O
THR
210
A
O
THR
106
1
A
HOH
480
I
HOH
1
A
HOH
483
I
HOH
1
A
HOH
500
I
HOH
1
A
HOH
543
I
HOH
1
A
HOH
617
I
HOH
1
A
MET
105
A
MET
1
1
Y
1
A
HIS
168
-140.42
26.32
1
A
ASP
171
75.88
-1.25
1
A
HIS
172
-111.42
72.62
1
A
HIS
206
-137.60
-153.24
13.577
0.27
0.00
-0.33
-0.11
0.00
-0.44
0.965
0.956
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.18176
0.16062
0.16256
0.16256
1.32
25.68
3144
31503
31503
9.1
100.00
1.570
0.030
RANDOM
1
Anisotropic
THROUGHOUT
0
0
MOLECULAR REPLACEMENT
0.064
0.055
0.80
0.80
1.40
pdb entry 1Y93
MAXIMUM LIKELIHOOD
MASK
0.030
1.32
25.68
256
1532
38
0
1238
0.006
0.021
1310
1.100
1.943
1777
5.720
5.000
157
33.449
23.175
63
9.330
15.000
188
16.790
15.000
7
0.077
0.200
181
0.004
0.020
1042
0.183
0.200
669
0.308
0.200
923
0.115
0.200
150
0.074
0.200
18
0.202
0.200
68
0.121
0.200
37
0.760
1.500
796
1.115
2.000
1242
1.837
3.000
588
2.348
4.500
535
1.751
3.000
1384
2.614
3.000
262
1.860
3.000
1271
0.285
0.229
1.354
220
2119
20
100.00
10.41
1.32
49.08
2HU6
34648
34648
0
0
0.053
0.053
1
8.6
3.1
99.1
0.282
1.32
1.39
2.1
4823
0.282
2.9
95.6
refinement
REFMAC
5.2.0019
data collection
MAR345
345DTB
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
MOLREP
Crystal structure of human MMP-12 in complex with acetohydroxamic acid and a bicyclic inhibitor
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
The protein is monomeric in vivo and there is one molecule in the asymmetric unit.
A
ASN
126
A
ASN
22
HELX_P
A
ASN
143
A
ASN
39
1
1
18
A
LEU
212
A
LEU
108
HELX_P
A
LEU
224
A
LEU
120
1
2
13
A
ASP
244
A
ASP
140
HELX_P
A
PHE
248
A
PHE
144
5
3
5
A
SER
251
A
SER
147
HELX_P
A
TYR
262
A
TYR
158
1
4
12
metalc
2.566
A
ASP
124
A
OD1
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.406
A
ASP
124
A
OD2
ASP
20
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.464
A
ASP
158
A
O
ASP
54
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.028
A
HIS
168
A
NE2
HIS
64
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
1.970
A
ASP
170
A
OD2
ASP
66
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
2.352
A
ASP
175
A
OD2
ASP
71
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.280
A
GLY
176
A
O
GLY
72
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.347
A
GLY
178
A
O
GLY
74
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.304
A
ILE
180
A
O
ILE
76
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.025
A
HIS
183
A
NE2
HIS
79
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
2.413
A
GLY
190
A
O
GLY
86
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.336
A
GLY
192
A
O
GLY
88
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.544
A
ASP
194
A
OD2
ASP
90
1_555
A
CA
266
D
CA
CA
1_555
metalc
2.057
A
HIS
196
A
ND1
HIS
92
1_555
A
ZN
265
C
ZN
ZN
1_555
metalc
2.365
A
ASP
198
A
OD1
ASP
94
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.350
A
GLU
199
A
O
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.388
A
GLU
199
A
OE2
GLU
95
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.436
A
GLU
201
A
O
GLU
97
1_555
A
CA
267
E
CA
CA
1_555
metalc
2.263
A
GLU
201
A
OE2
GLU
97
1_555
A
CA
268
F
CA
CA
1_555
metalc
2.102
A
HIS
218
A
NE2
HIS
114
1_555
A
ZN
264
B
ZN
ZN
1_555
metalc
2.133
A
HIS
222
A
NE2
HIS
118
1_555
A
ZN
264
B
ZN
ZN
1_555
metalc
2.106
A
HIS
228
A
NE2
HIS
124
1_555
A
ZN
264
B
ZN
ZN
1_555
metalc
2.376
A
ZN
264
B
ZN
ZN
1_555
A
HAE
269
H
O2
HAE
1_555
metalc
2.138
A
ZN
264
B
ZN
ZN
1_555
A
HAE
269
H
O
HAE
1_555
metalc
2.437
A
ZN
264
B
ZN
ZN
1_555
A
HOH
655
I
O
HOH
1_555
metalc
2.511
A
CA
266
D
CA
CA
1_555
A
HOH
405
I
O
HOH
1_555
metalc
2.385
A
CA
266
D
CA
CA
1_555
A
HOH
470
I
O
HOH
1_555
metalc
2.407
A
CA
267
E
CA
CA
1_555
A
HOH
410
I
O
HOH
1_555
metalc
2.323
A
CA
267
E
CA
CA
1_555
A
HOH
428
I
O
HOH
1_555
HYDROLASE
MMP-12, matrix metalloproteinase, macrophage metalloelastase, inhibitor, hydroxamic acid, drug design, HYDROLASE
MMP12_HUMAN
UNP
1
106
P39900
GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDFHAFDGKGGILAHAF
GPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG
106
263
2HU6
106
263
P39900
A
1
2
159
1
initiating methionine
MET
105
2HU6
A
P39900
UNP
1
1
PHE
engineered mutation
ASP
171
2HU6
A
P39900
UNP
171
67
5
2
parallel
parallel
parallel
anti-parallel
parallel
A
LYS
148
A
LYS
44
A
LYS
151
A
LYS
47
A
TYR
113
A
TYR
9
A
ILE
118
A
ILE
14
A
ILE
159
A
ILE
55
A
ALA
164
A
ALA
60
A
ALA
195
A
ALA
91
A
ASP
198
A
ASP
94
A
ALA
182
A
ALA
78
A
ALA
184
A
ALA
80
A
TRP
203
A
TRP
99
A
THR
204
A
THR
100
A
THR
210
A
THR
106
A
ASN
211
A
ASN
107
BINDING SITE FOR RESIDUE ZN A 264
A
ZN
264
Software
5
BINDING SITE FOR RESIDUE ZN A 265
A
ZN
265
Software
4
BINDING SITE FOR RESIDUE CA A 266
A
CA
266
Software
6
BINDING SITE FOR RESIDUE CA A 267
A
CA
267
Software
5
BINDING SITE FOR RESIDUE CA A 268
A
CA
268
Software
6
BINDING SITE FOR RESIDUE 37A A 400
A
37A
400
Software
18
BINDING SITE FOR RESIDUE HAE A 269
A
HAE
269
Software
7
A
HIS
218
A
HIS
114
5
1_555
A
HIS
222
A
HIS
118
5
1_555
A
HIS
228
A
HIS
124
5
1_555
A
HAE
269
H
HAE
5
1_555
A
HOH
655
I
HOH
5
1_555
A
HIS
168
A
HIS
64
4
1_555
A
ASP
170
A
ASP
66
4
1_555
A
HIS
183
A
HIS
79
4
1_555
A
HIS
196
A
HIS
92
4
1_555
A
ASP
158
A
ASP
54
6
1_555
A
GLY
190
A
GLY
86
6
1_555
A
GLY
192
A
GLY
88
6
1_555
A
ASP
194
A
ASP
90
6
1_555
A
HOH
405
I
HOH
6
1_555
A
HOH
470
I
HOH
6
1_555
A
ASP
124
A
ASP
20
5
1_555
A
GLU
199
A
GLU
95
5
1_555
A
GLU
201
A
GLU
97
5
1_555
A
HOH
410
I
HOH
5
1_555
A
HOH
428
I
HOH
5
1_555
A
ASP
175
A
ASP
71
6
1_555
A
GLY
176
A
GLY
72
6
1_555
A
GLY
178
A
GLY
74
6
1_555
A
ILE
180
A
ILE
76
6
1_555
A
ASP
198
A
ASP
94
6
1_555
A
GLU
201
A
GLU
97
6
1_555
A
GLY
179
A
GLY
75
18
1_555
A
GLY
179
A
GLY
75
18
2_555
A
ILE
180
A
ILE
76
18
1_555
A
LEU
181
A
LEU
77
18
1_555
A
ALA
182
A
ALA
78
18
1_555
A
HIS
218
A
HIS
114
18
1_555
A
VAL
235
A
VAL
131
18
1_555
A
PHE
237
A
PHE
133
18
1_555
A
PRO
238
A
PRO
134
18
1_555
A
THR
239
A
THR
135
18
1_555
A
TYR
240
A
TYR
136
18
1_555
A
LYS
241
A
LYS
137
18
1_555
A
HOH
446
I
HOH
18
2_555
A
HOH
460
I
HOH
18
1_555
A
HOH
468
I
HOH
18
2_555
A
HOH
474
I
HOH
18
1_555
A
HOH
535
I
HOH
18
1_555
A
HOH
656
I
HOH
18
1_555
A
ALA
182
A
ALA
78
7
1_555
A
HIS
218
A
HIS
114
7
1_555
A
GLU
219
A
GLU
115
7
1_555
A
HIS
222
A
HIS
118
7
1_555
A
HIS
228
A
HIS
124
7
1_555
A
ZN
264
B
ZN
7
1_555
A
HOH
655
I
HOH
7
1_555
5
C 1 2 1