0.020323
0.000000
0.000000
0.000000
0.020323
0.000000
0.000000
0.000000
0.006938
0.00000
0.00000
0.00000
Eichinger, A.
Skerra, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
49.206
49.206
144.126
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C21 H30 O2
314.462
PROGESTERONE
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
282
31068
31075
10.1074/jbc.M703552200
17699160
Structural insight into the dual ligand specificity and mode of high density lipoprotein association of apolipoprotein d.
2007
10.2210/pdb2hzq/pdb
pdb_00002hzq
100
1
mirrors
CCD
2006-03-13
ADSC QUANTUM 315
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1.00890
1.0
ID23-1
ESRF
1.00890
SYNCHROTRON
ESRF BEAMLINE ID23-1
19988.102
Apolipoprotein D
L23P, W99H, C116S, I118S, L120S, P133V, N134A
1
man
polymer
314.462
PROGESTERONE
1
syn
non-polymer
18.015
water
234
nat
water
Apo-D, ApoD
no
yes
FHLGKCPNPPVQENFDVNKYPGRWYEIEKIPTTFENGRCIQANYSL(MSE)ENGKIKVLNQELRADGTVNQIEGEATPVN
LTEPAKLEVKFSWF(MSE)PSAPYHILATDYENYALVYSCTSISQSFHVDFAWILARNVALPPETVDSLKNILTSNNIDV
KK(MSE)TVTDQVNCPKLSAHHHHHH
FHLGKCPNPPVQENFDVNKYPGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEP
AKLEVKFSWFMPSAPYHILATDYENYALVYSCTSISQSFHVDFAWILARNVALPPETVDSLKNILTSNNIDVKKMTVTDQ
VNCPKLSAHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
APOD
9606
Homo sapiens
562
Escherichia coli
KS272
plasmid
pApoD27delta(QA)
1
2.16
43.7
VAPOR DIFFUSION, HANGING DROP
7.5
1.1 M lithium sulfate, 0.1 M ammonium formate, 0.075 M Hepes/NaOH, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Database references
Derived calculations
1
0
2007-08-14
1
1
2011-07-13
1
2
2021-10-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2006-08-09
REL
REL
STR
PROGESTERONE
HOH
water
STR
300
2
STR
STR
300
A
HOH
1
3
HOH
HOH
301
A
HOH
2
3
HOH
HOH
302
A
HOH
3
3
HOH
HOH
303
A
HOH
4
3
HOH
HOH
304
A
HOH
5
3
HOH
HOH
305
A
HOH
6
3
HOH
HOH
306
A
HOH
7
3
HOH
HOH
307
A
HOH
8
3
HOH
HOH
308
A
HOH
9
3
HOH
HOH
309
A
HOH
10
3
HOH
HOH
310
A
HOH
11
3
HOH
HOH
311
A
HOH
12
3
HOH
HOH
312
A
HOH
13
3
HOH
HOH
313
A
HOH
14
3
HOH
HOH
314
A
HOH
15
3
HOH
HOH
315
A
HOH
16
3
HOH
HOH
316
A
HOH
17
3
HOH
HOH
317
A
HOH
18
3
HOH
HOH
318
A
HOH
19
3
HOH
HOH
319
A
HOH
20
3
HOH
HOH
320
A
HOH
21
3
HOH
HOH
321
A
HOH
22
3
HOH
HOH
322
A
HOH
23
3
HOH
HOH
323
A
HOH
24
3
HOH
HOH
324
A
HOH
25
3
HOH
HOH
325
A
HOH
26
3
HOH
HOH
326
A
HOH
27
3
HOH
HOH
327
A
HOH
28
3
HOH
HOH
328
A
HOH
29
3
HOH
HOH
329
A
HOH
30
3
HOH
HOH
330
A
HOH
31
3
HOH
HOH
331
A
HOH
32
3
HOH
HOH
332
A
HOH
33
3
HOH
HOH
333
A
HOH
34
3
HOH
HOH
334
A
HOH
35
3
HOH
HOH
335
A
HOH
36
3
HOH
HOH
336
A
HOH
37
3
HOH
HOH
337
A
HOH
38
3
HOH
HOH
338
A
HOH
39
3
HOH
HOH
339
A
HOH
40
3
HOH
HOH
340
A
HOH
41
3
HOH
HOH
341
A
HOH
42
3
HOH
HOH
342
A
HOH
43
3
HOH
HOH
343
A
HOH
44
3
HOH
HOH
344
A
HOH
45
3
HOH
HOH
345
A
HOH
46
3
HOH
HOH
346
A
HOH
47
3
HOH
HOH
347
A
HOH
48
3
HOH
HOH
348
A
HOH
49
3
HOH
HOH
349
A
HOH
50
3
HOH
HOH
350
A
HOH
51
3
HOH
HOH
351
A
HOH
52
3
HOH
HOH
352
A
HOH
53
3
HOH
HOH
353
A
HOH
54
3
HOH
HOH
354
A
HOH
55
3
HOH
HOH
355
A
HOH
56
3
HOH
HOH
356
A
HOH
57
3
HOH
HOH
357
A
HOH
58
3
HOH
HOH
358
A
HOH
59
3
HOH
HOH
359
A
HOH
60
3
HOH
HOH
360
A
HOH
61
3
HOH
HOH
361
A
HOH
62
3
HOH
HOH
362
A
HOH
63
3
HOH
HOH
363
A
HOH
64
3
HOH
HOH
364
A
HOH
65
3
HOH
HOH
365
A
HOH
66
3
HOH
HOH
366
A
HOH
67
3
HOH
HOH
367
A
HOH
68
3
HOH
HOH
368
A
HOH
69
3
HOH
HOH
369
A
HOH
70
3
HOH
HOH
370
A
HOH
71
3
HOH
HOH
371
A
HOH
72
3
HOH
HOH
372
A
HOH
73
3
HOH
HOH
373
A
HOH
74
3
HOH
HOH
374
A
HOH
75
3
HOH
HOH
375
A
HOH
76
3
HOH
HOH
376
A
HOH
77
3
HOH
HOH
377
A
HOH
78
3
HOH
HOH
378
A
HOH
79
3
HOH
HOH
379
A
HOH
80
3
HOH
HOH
380
A
HOH
81
3
HOH
HOH
381
A
HOH
82
3
HOH
HOH
382
A
HOH
83
3
HOH
HOH
383
A
HOH
84
3
HOH
HOH
384
A
HOH
85
3
HOH
HOH
385
A
HOH
86
3
HOH
HOH
386
A
HOH
87
3
HOH
HOH
387
A
HOH
88
3
HOH
HOH
388
A
HOH
89
3
HOH
HOH
389
A
HOH
90
3
HOH
HOH
390
A
HOH
91
3
HOH
HOH
391
A
HOH
92
3
HOH
HOH
392
A
HOH
93
3
HOH
HOH
393
A
HOH
94
3
HOH
HOH
394
A
HOH
95
3
HOH
HOH
395
A
HOH
96
3
HOH
HOH
396
A
HOH
97
3
HOH
HOH
397
A
HOH
98
3
HOH
HOH
398
A
HOH
99
3
HOH
HOH
399
A
HOH
100
3
HOH
HOH
400
A
HOH
101
3
HOH
HOH
401
A
HOH
102
3
HOH
HOH
402
A
HOH
103
3
HOH
HOH
403
A
HOH
104
3
HOH
HOH
404
A
HOH
105
3
HOH
HOH
405
A
HOH
106
3
HOH
HOH
406
A
HOH
107
3
HOH
HOH
407
A
HOH
108
3
HOH
HOH
408
A
HOH
109
3
HOH
HOH
409
A
HOH
110
3
HOH
HOH
410
A
HOH
111
3
HOH
HOH
411
A
HOH
112
3
HOH
HOH
412
A
HOH
113
3
HOH
HOH
413
A
HOH
114
3
HOH
HOH
414
A
HOH
115
3
HOH
HOH
415
A
HOH
116
3
HOH
HOH
416
A
HOH
117
3
HOH
HOH
417
A
HOH
118
3
HOH
HOH
418
A
HOH
119
3
HOH
HOH
419
A
HOH
120
3
HOH
HOH
420
A
HOH
121
3
HOH
HOH
421
A
HOH
122
3
HOH
HOH
422
A
HOH
123
3
HOH
HOH
423
A
HOH
124
3
HOH
HOH
424
A
HOH
125
3
HOH
HOH
425
A
HOH
126
3
HOH
HOH
426
A
HOH
127
3
HOH
HOH
427
A
HOH
128
3
HOH
HOH
428
A
HOH
129
3
HOH
HOH
429
A
HOH
130
3
HOH
HOH
430
A
HOH
131
3
HOH
HOH
431
A
HOH
132
3
HOH
HOH
432
A
HOH
133
3
HOH
HOH
433
A
HOH
134
3
HOH
HOH
434
A
HOH
135
3
HOH
HOH
435
A
HOH
136
3
HOH
HOH
436
A
HOH
137
3
HOH
HOH
437
A
HOH
138
3
HOH
HOH
438
A
HOH
139
3
HOH
HOH
439
A
HOH
140
3
HOH
HOH
440
A
HOH
141
3
HOH
HOH
441
A
HOH
142
3
HOH
HOH
442
A
HOH
143
3
HOH
HOH
443
A
HOH
144
3
HOH
HOH
444
A
HOH
145
3
HOH
HOH
445
A
HOH
146
3
HOH
HOH
446
A
HOH
147
3
HOH
HOH
447
A
HOH
148
3
HOH
HOH
448
A
HOH
149
3
HOH
HOH
449
A
HOH
150
3
HOH
HOH
450
A
HOH
151
3
HOH
HOH
451
A
HOH
152
3
HOH
HOH
452
A
HOH
153
3
HOH
HOH
453
A
HOH
154
3
HOH
HOH
454
A
HOH
155
3
HOH
HOH
455
A
HOH
156
3
HOH
HOH
456
A
HOH
157
3
HOH
HOH
457
A
HOH
158
3
HOH
HOH
458
A
HOH
159
3
HOH
HOH
459
A
HOH
160
3
HOH
HOH
460
A
HOH
161
3
HOH
HOH
461
A
HOH
162
3
HOH
HOH
462
A
HOH
163
3
HOH
HOH
463
A
HOH
164
3
HOH
HOH
464
A
HOH
165
3
HOH
HOH
465
A
HOH
166
3
HOH
HOH
466
A
HOH
167
3
HOH
HOH
467
A
HOH
168
3
HOH
HOH
468
A
HOH
169
3
HOH
HOH
469
A
HOH
170
3
HOH
HOH
470
A
HOH
171
3
HOH
HOH
471
A
HOH
172
3
HOH
HOH
472
A
HOH
173
3
HOH
HOH
473
A
HOH
174
3
HOH
HOH
474
A
HOH
175
3
HOH
HOH
475
A
HOH
176
3
HOH
HOH
476
A
HOH
177
3
HOH
HOH
477
A
HOH
178
3
HOH
HOH
478
A
HOH
179
3
HOH
HOH
479
A
HOH
180
3
HOH
HOH
480
A
HOH
181
3
HOH
HOH
481
A
HOH
182
3
HOH
HOH
482
A
HOH
183
3
HOH
HOH
483
A
HOH
184
3
HOH
HOH
484
A
HOH
185
3
HOH
HOH
485
A
HOH
186
3
HOH
HOH
486
A
HOH
187
3
HOH
HOH
487
A
HOH
188
3
HOH
HOH
488
A
HOH
190
3
HOH
HOH
489
A
HOH
191
3
HOH
HOH
490
A
HOH
192
3
HOH
HOH
491
A
HOH
193
3
HOH
HOH
492
A
HOH
194
3
HOH
HOH
493
A
HOH
195
3
HOH
HOH
494
A
HOH
196
3
HOH
HOH
495
A
HOH
197
3
HOH
HOH
496
A
HOH
198
3
HOH
HOH
497
A
HOH
199
3
HOH
HOH
498
A
HOH
200
3
HOH
HOH
499
A
HOH
201
3
HOH
HOH
500
A
HOH
202
3
HOH
HOH
501
A
HOH
203
3
HOH
HOH
502
A
HOH
204
3
HOH
HOH
503
A
HOH
205
3
HOH
HOH
504
A
HOH
206
3
HOH
HOH
505
A
HOH
207
3
HOH
HOH
506
A
HOH
208
3
HOH
HOH
507
A
HOH
209
3
HOH
HOH
508
A
HOH
210
3
HOH
HOH
509
A
HOH
211
3
HOH
HOH
510
A
HOH
212
3
HOH
HOH
511
A
HOH
213
3
HOH
HOH
512
A
HOH
214
3
HOH
HOH
513
A
HOH
215
3
HOH
HOH
514
A
HOH
216
3
HOH
HOH
515
A
HOH
217
3
HOH
HOH
516
A
HOH
218
3
HOH
HOH
517
A
HOH
219
3
HOH
HOH
518
A
HOH
220
3
HOH
HOH
519
A
HOH
221
3
HOH
HOH
520
A
HOH
222
3
HOH
HOH
521
A
HOH
223
3
HOH
HOH
522
A
HOH
224
3
HOH
HOH
523
A
HOH
225
3
HOH
HOH
524
A
HOH
226
3
HOH
HOH
525
A
HOH
227
3
HOH
HOH
526
A
HOH
228
3
HOH
HOH
527
A
HOH
229
3
HOH
HOH
528
A
HOH
230
3
HOH
HOH
529
A
HOH
231
3
HOH
HOH
530
A
HOH
232
3
HOH
HOH
531
A
HOH
233
3
HOH
HOH
532
A
HOH
234
3
HOH
HOH
533
A
HOH
235
3
HOH
HOH
534
A
4.000
15.000
PHE
3
n
1
PHE
3
A
HIS
4
n
2
HIS
4
A
LEU
5
n
3
LEU
5
A
GLY
6
n
4
GLY
6
A
LYS
7
n
5
LYS
7
A
CYS
8
n
6
CYS
8
A
PRO
9
n
7
PRO
9
A
ASN
10
n
8
ASN
10
A
PRO
11
n
9
PRO
11
A
PRO
12
n
10
PRO
12
A
VAL
13
n
11
VAL
13
A
GLN
14
n
12
GLN
14
A
GLU
15
n
13
GLU
15
A
ASN
16
n
14
ASN
16
A
PHE
17
n
15
PHE
17
A
ASP
18
n
16
ASP
18
A
VAL
19
n
17
VAL
19
A
ASN
20
n
18
ASN
20
A
LYS
21
n
19
LYS
21
A
TYR
22
n
20
TYR
22
A
PRO
23
n
21
PRO
23
A
GLY
24
n
22
GLY
24
A
ARG
25
n
23
ARG
25
A
TRP
26
n
24
TRP
26
A
TYR
27
n
25
TYR
27
A
GLU
28
n
26
GLU
28
A
ILE
29
n
27
ILE
29
A
GLU
30
n
28
GLU
30
A
LYS
31
n
29
LYS
31
A
ILE
32
n
30
ILE
32
A
PRO
33
n
31
PRO
33
A
THR
34
n
32
THR
34
A
THR
35
n
33
THR
35
A
PHE
36
n
34
PHE
36
A
GLU
37
n
35
GLU
37
A
ASN
38
n
36
ASN
38
A
GLY
39
n
37
GLY
39
A
ARG
40
n
38
ARG
40
A
CYS
41
n
39
CYS
41
A
ILE
42
n
40
ILE
42
A
GLN
43
n
41
GLN
43
A
ALA
44
n
42
ALA
44
A
ASN
45
n
43
ASN
45
A
TYR
46
n
44
TYR
46
A
SER
47
n
45
SER
47
A
LEU
48
n
46
LEU
48
A
MSE
49
n
47
MSE
49
A
GLU
50
n
48
GLU
50
A
ASN
51
n
49
ASN
51
A
GLY
52
n
50
GLY
52
A
LYS
53
n
51
LYS
53
A
ILE
54
n
52
ILE
54
A
LYS
55
n
53
LYS
55
A
VAL
56
n
54
VAL
56
A
LEU
57
n
55
LEU
57
A
ASN
58
n
56
ASN
58
A
GLN
59
n
57
GLN
59
A
GLU
60
n
58
GLU
60
A
LEU
61
n
59
LEU
61
A
ARG
62
n
60
ARG
62
A
ALA
63
n
61
ALA
63
A
ASP
64
n
62
ASP
64
A
GLY
65
n
63
GLY
65
A
THR
66
n
64
THR
66
A
VAL
67
n
65
VAL
67
A
ASN
68
n
66
ASN
68
A
GLN
69
n
67
GLN
69
A
ILE
70
n
68
ILE
70
A
GLU
71
n
69
GLU
71
A
GLY
72
n
70
GLY
72
A
GLU
73
n
71
GLU
73
A
ALA
74
n
72
ALA
74
A
THR
75
n
73
THR
75
A
PRO
76
n
74
PRO
76
A
VAL
77
n
75
VAL
77
A
ASN
78
n
76
ASN
78
A
LEU
79
n
77
LEU
79
A
THR
80
n
78
THR
80
A
GLU
81
n
79
GLU
81
A
PRO
82
n
80
PRO
82
A
ALA
83
n
81
ALA
83
A
LYS
84
n
82
LYS
84
A
LEU
85
n
83
LEU
85
A
GLU
86
n
84
GLU
86
A
VAL
87
n
85
VAL
87
A
LYS
88
n
86
LYS
88
A
PHE
89
n
87
PHE
89
A
SER
90
n
88
SER
90
A
TRP
91
n
89
TRP
91
A
PHE
92
n
90
PHE
92
A
MSE
93
n
91
MSE
93
A
PRO
94
n
92
PRO
94
A
SER
95
n
93
SER
95
A
ALA
96
n
94
ALA
96
A
PRO
97
n
95
PRO
97
A
TYR
98
n
96
TYR
98
A
HIS
99
n
97
HIS
99
A
ILE
100
n
98
ILE
100
A
LEU
101
n
99
LEU
101
A
ALA
102
n
100
ALA
102
A
THR
103
n
101
THR
103
A
ASP
104
n
102
ASP
104
A
TYR
105
n
103
TYR
105
A
GLU
106
n
104
GLU
106
A
ASN
107
n
105
ASN
107
A
TYR
108
n
106
TYR
108
A
ALA
109
n
107
ALA
109
A
LEU
110
n
108
LEU
110
A
VAL
111
n
109
VAL
111
A
TYR
112
n
110
TYR
112
A
SER
113
n
111
SER
113
A
CYS
114
n
112
CYS
114
A
THR
115
n
113
THR
115
A
SER
116
n
114
SER
116
A
ILE
117
n
115
ILE
117
A
SER
118
n
116
SER
118
A
GLN
119
n
117
GLN
119
A
SER
120
n
118
SER
120
A
PHE
121
n
119
PHE
121
A
HIS
122
n
120
HIS
122
A
VAL
123
n
121
VAL
123
A
ASP
124
n
122
ASP
124
A
PHE
125
n
123
PHE
125
A
ALA
126
n
124
ALA
126
A
TRP
127
n
125
TRP
127
A
ILE
128
n
126
ILE
128
A
LEU
129
n
127
LEU
129
A
ALA
130
n
128
ALA
130
A
ARG
131
n
129
ARG
131
A
ASN
132
n
130
ASN
132
A
VAL
133
n
131
VAL
133
A
ALA
134
n
132
ALA
134
A
LEU
135
n
133
LEU
135
A
PRO
136
n
134
PRO
136
A
PRO
137
n
135
PRO
137
A
GLU
138
n
136
GLU
138
A
THR
139
n
137
THR
139
A
VAL
140
n
138
VAL
140
A
ASP
141
n
139
ASP
141
A
SER
142
n
140
SER
142
A
LEU
143
n
141
LEU
143
A
LYS
144
n
142
LYS
144
A
ASN
145
n
143
ASN
145
A
ILE
146
n
144
ILE
146
A
LEU
147
n
145
LEU
147
A
THR
148
n
146
THR
148
A
SER
149
n
147
SER
149
A
ASN
150
n
148
ASN
150
A
ASN
151
n
149
ASN
151
A
ILE
152
n
150
ILE
152
A
ASP
153
n
151
ASP
153
A
VAL
154
n
152
VAL
154
A
LYS
155
n
153
LYS
155
A
LYS
156
n
154
LYS
156
A
MSE
157
n
155
MSE
157
A
THR
158
n
156
THR
158
A
VAL
159
n
157
VAL
159
A
THR
160
n
158
THR
160
A
ASP
161
n
159
ASP
161
A
GLN
162
n
160
GLN
162
A
VAL
163
n
161
VAL
163
A
ASN
164
n
162
ASN
164
A
CYS
165
n
163
CYS
165
A
PRO
166
n
164
PRO
166
A
LYS
167
n
165
LYS
167
A
LEU
168
n
166
LEU
168
A
n
167
169
A
n
168
170
A
n
169
171
A
n
170
172
A
n
171
173
A
n
172
174
A
n
173
175
A
n
174
176
A
author_defined_assembly
1
monomeric
A
MSE
49
SELENOMETHIONINE
A
MSE
47
MET
A
MSE
93
SELENOMETHIONINE
A
MSE
91
MET
A
MSE
157
SELENOMETHIONINE
A
MSE
155
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
4
A
N
HIS
2
A
O
HIS
122
A
O
HIS
120
A
O
ALA
130
A
O
ALA
128
A
N
TYR
27
A
N
TYR
25
A
N
LYS
31
A
N
LYS
29
A
O
THR
158
A
O
THR
156
A
N
HIS
4
A
N
HIS
2
A
O
HIS
122
A
O
HIS
120
A
O
LEU
129
A
O
LEU
127
A
N
ALA
109
A
N
ALA
107
A
O
LEU
110
A
O
LEU
108
A
N
ALA
102
A
N
ALA
100
A
O
TYR
98
A
O
TYR
96
A
N
LEU
85
A
N
LEU
83
A
O
GLU
86
A
O
GLU
84
A
N
THR
75
A
N
THR
73
A
O
ALA
74
A
O
ALA
72
A
N
ILE
54
A
N
ILE
52
A
O
LYS
55
A
O
LYS
53
A
N
SER
47
A
N
SER
45
A
O
TYR
46
A
O
TYR
44
A
N
GLY
24
A
N
GLY
22
A
N
LYS
31
A
N
LYS
29
A
O
THR
158
A
O
THR
156
1
A
GLU
50
A
GLU
48
0
Y
1
A
SER
169
A
SER
167
1
Y
1
A
ALA
170
A
ALA
168
1
Y
1
A
HIS
171
A
HIS
169
1
Y
1
A
HIS
172
A
HIS
170
1
Y
1
A
HIS
173
A
HIS
171
1
Y
1
A
HIS
174
A
HIS
172
1
Y
1
A
HIS
175
A
HIS
173
1
Y
1
A
HIS
176
A
HIS
174
1
Y
1
A
A
GLU
ASN
37
38
-122.77
1
A
A
C
N
GLU
ASN
50
51
1.00
1
26.90
2.70
111.00
137.90
A
A
A
N
CA
C
ASN
ASN
ASN
38
38
38
N
1
21.32
2.50
121.70
143.02
A
A
A
C
N
CA
MSE
GLU
GLU
49
50
50
Y
1
A
A
C
N
GLU
ASN
50
51
-0.341
0.023
1.336
0.995
Y
1
A
TYR
105
63.39
-25.41
1
A
ASN
107
-133.73
-52.38
1
A
SER
118
64.43
174.28
22.551
0.790
0.000
0.000
0.790
0.000
-1.570
0.953
0.944
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.226
0.187
0.189
0.189
1.800
30.000
860
17254
17013
5.100
98.650
2.714
0.085
RANDOM
1
THROUGHOUT
0.000
FOURIER SYNTHESIS
0.137
0.130
0.800
0.800
1.200
Model of uncomplexed ApoD
Engh & Huber
MASK
1.800
30.000
235
1585
23
0
1327
0.014
0.022
1379
1.691
1.961
1888
7.526
5.000
163
40.310
25.556
63
14.280
15.000
224
22.649
15.000
4
0.104
0.200
212
0.006
0.020
1045
0.210
0.200
590
0.312
0.200
951
0.135
0.200
176
0.193
0.200
43
0.215
0.200
12
1.107
1.500
857
1.738
2.000
1358
2.794
3.000
600
4.265
4.500
530
0.314
0.211
1.847
89
1074
1163
20
94.400
1.800
46.575
2HZQ
17254
17084
0
3.000
0.07
0.07
1
6.600
11.300
98.700
0.308
1.80
1.90
2.3
26431
2350
0.308
11.20
95.30
0.215
1.90
2.01
3.5
24905
2236
0.215
11.10
97.50
0.136
2.01
2.15
5.3
23856
2188
0.136
10.90
98.90
0.106
2.15
2.32
6.4
22574
2053
0.106
11.00
99.20
0.093
2.32
2.55
7.4
21103
1891
0.093
11.20
100.00
0.083
2.55
2.85
7.2
19866
1730
0.083
11.50
100.00
0.064
2.85
3.29
9.2
17885
1572
0.064
11.40
100.00
0.049
3.29
4.02
10.7
15037
1332
0.049
11.30
100.00
0.046
4.02
5.69
11.8
14181
1073
0.046
13.20
100.00
0.049
5.69
49.21
8.1
7562
659
0.049
11.50
99.30
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/INDEX.html
SCALA
other
phasing
Charles R
crk@agouron.com
http://www.msg.ucsf.edu/local/programs/epmr/epmr.html
EPMR
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data collection
ADSC
Quantum
data reduction
MOSFLM
phasing
REFMAC
5.2.0003
Crystal structure of human apolipoprotein D (ApoD) in complex with progesterone
1
N
N
2
N
N
3
N
N
A
ASP
18
A
ASP
16
HELX_P
A
TYR
22
A
TYR
20
5
1
5
A
PRO
136
A
PRO
134
HELX_P
A
ASN
150
A
ASN
148
1
2
15
disulf
2.054
A
CYS
8
A
SG
CYS
6
1_555
A
CYS
114
A
SG
CYS
112
1_555
disulf
1.985
A
CYS
41
A
SG
CYS
39
1_555
A
CYS
165
A
SG
CYS
163
1_555
covale
1.332
both
A
LEU
48
A
C
LEU
46
1_555
A
MSE
49
A
N
MSE
47
1_555
covale
1.327
both
A
MSE
49
A
C
MSE
47
1_555
A
GLU
50
A
N
GLU
48
1_555
covale
1.330
both
A
PHE
92
A
C
PHE
90
1_555
A
MSE
93
A
N
MSE
91
1_555
covale
1.340
both
A
MSE
93
A
C
MSE
91
1_555
A
PRO
94
A
N
PRO
92
1_555
covale
1.332
both
A
LYS
156
A
C
LYS
154
1_555
A
MSE
157
A
N
MSE
155
1_555
covale
1.332
both
A
MSE
157
A
C
MSE
155
1_555
A
THR
158
A
N
THR
156
1_555
TRANSPORT PROTEIN
lipocalin, beta barrel, bilin-binding protein, transport protein
APOD_HUMAN
UNP
1
23
P05090
FHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEP
AKLEVKFSWFMPSAPYWILATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQ
VNCPKLS
23
189
2HZQ
3
169
P05090
A
1
1
167
1
LEU
engineered mutation
PRO
23
2HZQ
A
P05090
UNP
43
21
1
MET
modified residue
MSE
49
2HZQ
A
P05090
UNP
69
47
1
MET
modified residue
MSE
93
2HZQ
A
P05090
UNP
113
91
1
TRP
engineered mutation
HIS
99
2HZQ
A
P05090
UNP
119
97
1
CYS
engineered mutation
SER
116
2HZQ
A
P05090
UNP
136
114
1
ILE
engineered mutation
SER
118
2HZQ
A
P05090
UNP
138
116
1
LEU
engineered mutation
SER
120
2HZQ
A
P05090
UNP
140
118
1
PRO
engineered mutation
VAL
133
2HZQ
A
P05090
UNP
153
131
1
ASN
engineered mutation
ALA
134
2HZQ
A
P05090
UNP
154
132
1
MET
modified residue
MSE
157
2HZQ
A
P05090
UNP
177
155
1
expression tag
ALA
170
2HZQ
A
P05090
UNP
168
1
expression tag
HIS
171
2HZQ
A
P05090
UNP
169
1
expression tag
HIS
172
2HZQ
A
P05090
UNP
170
1
expression tag
HIS
173
2HZQ
A
P05090
UNP
171
1
expression tag
HIS
174
2HZQ
A
P05090
UNP
172
1
expression tag
HIS
175
2HZQ
A
P05090
UNP
173
1
expression tag
HIS
176
2HZQ
A
P05090
UNP
174
4
10
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
4
A
HIS
2
A
LEU
5
A
LEU
3
A
PHE
121
A
PHE
119
A
ALA
130
A
ALA
128
A
GLY
24
A
GLY
22
A
LYS
31
A
LYS
29
A
THR
158
A
THR
156
A
VAL
159
A
VAL
157
A
HIS
4
A
HIS
2
A
LEU
5
A
LEU
3
A
PHE
121
A
PHE
119
A
ALA
130
A
ALA
128
A
TYR
108
A
TYR
106
A
SER
116
A
SER
114
A
ALA
96
A
ALA
94
A
THR
103
A
THR
101
A
LYS
84
A
LYS
82
A
LYS
88
A
LYS
86
A
VAL
67
A
VAL
65
A
PRO
76
A
PRO
74
A
ILE
54
A
ILE
52
A
LEU
61
A
LEU
59
A
ARG
40
A
ARG
38
A
LEU
48
A
LEU
46
A
GLY
24
A
GLY
22
A
LYS
31
A
LYS
29
A
THR
158
A
THR
156
A
VAL
159
A
VAL
157
BINDING SITE FOR RESIDUE STR A 300
A
STR
300
Software
8
A
THR
34
A
THR
32
8
1_555
A
ALA
44
A
ALA
42
8
1_555
A
TYR
46
A
TYR
44
8
1_555
A
ASN
58
A
ASN
56
8
1_555
A
PHE
89
A
PHE
87
8
1_555
A
TYR
98
A
TYR
96
8
1_555
A
LEU
129
A
LEU
127
8
1_555
A
HOH
461
C
HOH
8
1_555
96
P 43 21 2