0.020323 0.000000 0.000000 0.000000 0.020323 0.000000 0.000000 0.000000 0.006938 0.00000 0.00000 0.00000 Eichinger, A. Skerra, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 49.206 49.206 144.126 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C21 H30 O2 314.462 PROGESTERONE non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 282 31068 31075 10.1074/jbc.M703552200 17699160 Structural insight into the dual ligand specificity and mode of high density lipoprotein association of apolipoprotein d. 2007 10.2210/pdb2hzq/pdb pdb_00002hzq 100 1 mirrors CCD 2006-03-13 ADSC QUANTUM 315 Si 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 1.00890 1.0 ID23-1 ESRF 1.00890 SYNCHROTRON ESRF BEAMLINE ID23-1 19988.102 Apolipoprotein D L23P, W99H, C116S, I118S, L120S, P133V, N134A 1 man polymer 314.462 PROGESTERONE 1 syn non-polymer 18.015 water 234 nat water Apo-D, ApoD no yes FHLGKCPNPPVQENFDVNKYPGRWYEIEKIPTTFENGRCIQANYSL(MSE)ENGKIKVLNQELRADGTVNQIEGEATPVN LTEPAKLEVKFSWF(MSE)PSAPYHILATDYENYALVYSCTSISQSFHVDFAWILARNVALPPETVDSLKNILTSNNIDV KK(MSE)TVTDQVNCPKLSAHHHHHH FHLGKCPNPPVQENFDVNKYPGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEP AKLEVKFSWFMPSAPYHILATDYENYALVYSCTSISQSFHVDFAWILARNVALPPETVDSLKNILTSNNIDVKKMTVTDQ VNCPKLSAHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample APOD 9606 Homo sapiens 562 Escherichia coli KS272 plasmid pApoD27delta(QA) 1 2.16 43.7 VAPOR DIFFUSION, HANGING DROP 7.5 1.1 M lithium sulfate, 0.1 M ammonium formate, 0.075 M Hepes/NaOH, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Database references Derived calculations 1 0 2007-08-14 1 1 2011-07-13 1 2 2021-10-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2006-08-09 REL REL STR PROGESTERONE HOH water STR 300 2 STR STR 300 A HOH 1 3 HOH HOH 301 A HOH 2 3 HOH HOH 302 A HOH 3 3 HOH HOH 303 A HOH 4 3 HOH HOH 304 A HOH 5 3 HOH HOH 305 A HOH 6 3 HOH HOH 306 A HOH 7 3 HOH HOH 307 A HOH 8 3 HOH HOH 308 A HOH 9 3 HOH HOH 309 A HOH 10 3 HOH HOH 310 A HOH 11 3 HOH HOH 311 A HOH 12 3 HOH HOH 312 A HOH 13 3 HOH HOH 313 A HOH 14 3 HOH HOH 314 A HOH 15 3 HOH HOH 315 A HOH 16 3 HOH HOH 316 A HOH 17 3 HOH HOH 317 A HOH 18 3 HOH HOH 318 A HOH 19 3 HOH HOH 319 A HOH 20 3 HOH HOH 320 A HOH 21 3 HOH HOH 321 A HOH 22 3 HOH HOH 322 A HOH 23 3 HOH HOH 323 A HOH 24 3 HOH HOH 324 A HOH 25 3 HOH HOH 325 A HOH 26 3 HOH HOH 326 A HOH 27 3 HOH HOH 327 A HOH 28 3 HOH HOH 328 A HOH 29 3 HOH HOH 329 A HOH 30 3 HOH HOH 330 A HOH 31 3 HOH HOH 331 A HOH 32 3 HOH HOH 332 A HOH 33 3 HOH HOH 333 A HOH 34 3 HOH HOH 334 A HOH 35 3 HOH HOH 335 A HOH 36 3 HOH HOH 336 A HOH 37 3 HOH HOH 337 A HOH 38 3 HOH HOH 338 A HOH 39 3 HOH HOH 339 A HOH 40 3 HOH HOH 340 A HOH 41 3 HOH HOH 341 A HOH 42 3 HOH HOH 342 A HOH 43 3 HOH HOH 343 A HOH 44 3 HOH HOH 344 A HOH 45 3 HOH HOH 345 A HOH 46 3 HOH HOH 346 A HOH 47 3 HOH HOH 347 A HOH 48 3 HOH HOH 348 A HOH 49 3 HOH HOH 349 A HOH 50 3 HOH HOH 350 A HOH 51 3 HOH HOH 351 A HOH 52 3 HOH HOH 352 A HOH 53 3 HOH HOH 353 A HOH 54 3 HOH HOH 354 A HOH 55 3 HOH HOH 355 A HOH 56 3 HOH HOH 356 A HOH 57 3 HOH HOH 357 A HOH 58 3 HOH HOH 358 A HOH 59 3 HOH HOH 359 A HOH 60 3 HOH HOH 360 A HOH 61 3 HOH HOH 361 A HOH 62 3 HOH HOH 362 A HOH 63 3 HOH HOH 363 A HOH 64 3 HOH HOH 364 A HOH 65 3 HOH HOH 365 A HOH 66 3 HOH HOH 366 A HOH 67 3 HOH HOH 367 A HOH 68 3 HOH HOH 368 A HOH 69 3 HOH HOH 369 A HOH 70 3 HOH HOH 370 A HOH 71 3 HOH HOH 371 A HOH 72 3 HOH HOH 372 A HOH 73 3 HOH HOH 373 A HOH 74 3 HOH HOH 374 A HOH 75 3 HOH HOH 375 A HOH 76 3 HOH HOH 376 A HOH 77 3 HOH HOH 377 A HOH 78 3 HOH HOH 378 A HOH 79 3 HOH HOH 379 A HOH 80 3 HOH HOH 380 A HOH 81 3 HOH HOH 381 A HOH 82 3 HOH HOH 382 A HOH 83 3 HOH HOH 383 A HOH 84 3 HOH HOH 384 A HOH 85 3 HOH HOH 385 A HOH 86 3 HOH HOH 386 A HOH 87 3 HOH HOH 387 A HOH 88 3 HOH HOH 388 A HOH 89 3 HOH HOH 389 A HOH 90 3 HOH HOH 390 A HOH 91 3 HOH HOH 391 A HOH 92 3 HOH HOH 392 A HOH 93 3 HOH HOH 393 A HOH 94 3 HOH HOH 394 A HOH 95 3 HOH HOH 395 A HOH 96 3 HOH HOH 396 A HOH 97 3 HOH HOH 397 A HOH 98 3 HOH HOH 398 A HOH 99 3 HOH HOH 399 A HOH 100 3 HOH HOH 400 A HOH 101 3 HOH HOH 401 A HOH 102 3 HOH HOH 402 A HOH 103 3 HOH HOH 403 A HOH 104 3 HOH HOH 404 A HOH 105 3 HOH HOH 405 A HOH 106 3 HOH HOH 406 A HOH 107 3 HOH HOH 407 A HOH 108 3 HOH HOH 408 A HOH 109 3 HOH HOH 409 A HOH 110 3 HOH HOH 410 A HOH 111 3 HOH HOH 411 A HOH 112 3 HOH HOH 412 A HOH 113 3 HOH HOH 413 A HOH 114 3 HOH HOH 414 A HOH 115 3 HOH HOH 415 A HOH 116 3 HOH HOH 416 A HOH 117 3 HOH HOH 417 A HOH 118 3 HOH HOH 418 A HOH 119 3 HOH HOH 419 A HOH 120 3 HOH HOH 420 A HOH 121 3 HOH HOH 421 A HOH 122 3 HOH HOH 422 A HOH 123 3 HOH HOH 423 A HOH 124 3 HOH HOH 424 A HOH 125 3 HOH HOH 425 A HOH 126 3 HOH HOH 426 A HOH 127 3 HOH HOH 427 A HOH 128 3 HOH HOH 428 A HOH 129 3 HOH HOH 429 A HOH 130 3 HOH HOH 430 A HOH 131 3 HOH HOH 431 A HOH 132 3 HOH HOH 432 A HOH 133 3 HOH HOH 433 A HOH 134 3 HOH HOH 434 A HOH 135 3 HOH HOH 435 A HOH 136 3 HOH HOH 436 A HOH 137 3 HOH HOH 437 A HOH 138 3 HOH HOH 438 A HOH 139 3 HOH HOH 439 A HOH 140 3 HOH HOH 440 A HOH 141 3 HOH HOH 441 A HOH 142 3 HOH HOH 442 A HOH 143 3 HOH HOH 443 A HOH 144 3 HOH HOH 444 A HOH 145 3 HOH HOH 445 A HOH 146 3 HOH HOH 446 A HOH 147 3 HOH HOH 447 A HOH 148 3 HOH HOH 448 A HOH 149 3 HOH HOH 449 A HOH 150 3 HOH HOH 450 A HOH 151 3 HOH HOH 451 A HOH 152 3 HOH HOH 452 A HOH 153 3 HOH HOH 453 A HOH 154 3 HOH HOH 454 A HOH 155 3 HOH HOH 455 A HOH 156 3 HOH HOH 456 A HOH 157 3 HOH HOH 457 A HOH 158 3 HOH HOH 458 A HOH 159 3 HOH HOH 459 A HOH 160 3 HOH HOH 460 A HOH 161 3 HOH HOH 461 A HOH 162 3 HOH HOH 462 A HOH 163 3 HOH HOH 463 A HOH 164 3 HOH HOH 464 A HOH 165 3 HOH HOH 465 A HOH 166 3 HOH HOH 466 A HOH 167 3 HOH HOH 467 A HOH 168 3 HOH HOH 468 A HOH 169 3 HOH HOH 469 A HOH 170 3 HOH HOH 470 A HOH 171 3 HOH HOH 471 A HOH 172 3 HOH HOH 472 A HOH 173 3 HOH HOH 473 A HOH 174 3 HOH HOH 474 A HOH 175 3 HOH HOH 475 A HOH 176 3 HOH HOH 476 A HOH 177 3 HOH HOH 477 A HOH 178 3 HOH HOH 478 A HOH 179 3 HOH HOH 479 A HOH 180 3 HOH HOH 480 A HOH 181 3 HOH HOH 481 A HOH 182 3 HOH HOH 482 A HOH 183 3 HOH HOH 483 A HOH 184 3 HOH HOH 484 A HOH 185 3 HOH HOH 485 A HOH 186 3 HOH HOH 486 A HOH 187 3 HOH HOH 487 A HOH 188 3 HOH HOH 488 A HOH 190 3 HOH HOH 489 A HOH 191 3 HOH HOH 490 A HOH 192 3 HOH HOH 491 A HOH 193 3 HOH HOH 492 A HOH 194 3 HOH HOH 493 A HOH 195 3 HOH HOH 494 A HOH 196 3 HOH HOH 495 A HOH 197 3 HOH HOH 496 A HOH 198 3 HOH HOH 497 A HOH 199 3 HOH HOH 498 A HOH 200 3 HOH HOH 499 A HOH 201 3 HOH HOH 500 A HOH 202 3 HOH HOH 501 A HOH 203 3 HOH HOH 502 A HOH 204 3 HOH HOH 503 A HOH 205 3 HOH HOH 504 A HOH 206 3 HOH HOH 505 A HOH 207 3 HOH HOH 506 A HOH 208 3 HOH HOH 507 A HOH 209 3 HOH HOH 508 A HOH 210 3 HOH HOH 509 A HOH 211 3 HOH HOH 510 A HOH 212 3 HOH HOH 511 A HOH 213 3 HOH HOH 512 A HOH 214 3 HOH HOH 513 A HOH 215 3 HOH HOH 514 A HOH 216 3 HOH HOH 515 A HOH 217 3 HOH HOH 516 A HOH 218 3 HOH HOH 517 A HOH 219 3 HOH HOH 518 A HOH 220 3 HOH HOH 519 A HOH 221 3 HOH HOH 520 A HOH 222 3 HOH HOH 521 A HOH 223 3 HOH HOH 522 A HOH 224 3 HOH HOH 523 A HOH 225 3 HOH HOH 524 A HOH 226 3 HOH HOH 525 A HOH 227 3 HOH HOH 526 A HOH 228 3 HOH HOH 527 A HOH 229 3 HOH HOH 528 A HOH 230 3 HOH HOH 529 A HOH 231 3 HOH HOH 530 A HOH 232 3 HOH HOH 531 A HOH 233 3 HOH HOH 532 A HOH 234 3 HOH HOH 533 A HOH 235 3 HOH HOH 534 A 4.000 15.000 PHE 3 n 1 PHE 3 A HIS 4 n 2 HIS 4 A LEU 5 n 3 LEU 5 A GLY 6 n 4 GLY 6 A LYS 7 n 5 LYS 7 A CYS 8 n 6 CYS 8 A PRO 9 n 7 PRO 9 A ASN 10 n 8 ASN 10 A PRO 11 n 9 PRO 11 A PRO 12 n 10 PRO 12 A VAL 13 n 11 VAL 13 A GLN 14 n 12 GLN 14 A GLU 15 n 13 GLU 15 A ASN 16 n 14 ASN 16 A PHE 17 n 15 PHE 17 A ASP 18 n 16 ASP 18 A VAL 19 n 17 VAL 19 A ASN 20 n 18 ASN 20 A LYS 21 n 19 LYS 21 A TYR 22 n 20 TYR 22 A PRO 23 n 21 PRO 23 A GLY 24 n 22 GLY 24 A ARG 25 n 23 ARG 25 A TRP 26 n 24 TRP 26 A TYR 27 n 25 TYR 27 A GLU 28 n 26 GLU 28 A ILE 29 n 27 ILE 29 A GLU 30 n 28 GLU 30 A LYS 31 n 29 LYS 31 A ILE 32 n 30 ILE 32 A PRO 33 n 31 PRO 33 A THR 34 n 32 THR 34 A THR 35 n 33 THR 35 A PHE 36 n 34 PHE 36 A GLU 37 n 35 GLU 37 A ASN 38 n 36 ASN 38 A GLY 39 n 37 GLY 39 A ARG 40 n 38 ARG 40 A CYS 41 n 39 CYS 41 A ILE 42 n 40 ILE 42 A GLN 43 n 41 GLN 43 A ALA 44 n 42 ALA 44 A ASN 45 n 43 ASN 45 A TYR 46 n 44 TYR 46 A SER 47 n 45 SER 47 A LEU 48 n 46 LEU 48 A MSE 49 n 47 MSE 49 A GLU 50 n 48 GLU 50 A ASN 51 n 49 ASN 51 A GLY 52 n 50 GLY 52 A LYS 53 n 51 LYS 53 A ILE 54 n 52 ILE 54 A LYS 55 n 53 LYS 55 A VAL 56 n 54 VAL 56 A LEU 57 n 55 LEU 57 A ASN 58 n 56 ASN 58 A GLN 59 n 57 GLN 59 A GLU 60 n 58 GLU 60 A LEU 61 n 59 LEU 61 A ARG 62 n 60 ARG 62 A ALA 63 n 61 ALA 63 A ASP 64 n 62 ASP 64 A GLY 65 n 63 GLY 65 A THR 66 n 64 THR 66 A VAL 67 n 65 VAL 67 A ASN 68 n 66 ASN 68 A GLN 69 n 67 GLN 69 A ILE 70 n 68 ILE 70 A GLU 71 n 69 GLU 71 A GLY 72 n 70 GLY 72 A GLU 73 n 71 GLU 73 A ALA 74 n 72 ALA 74 A THR 75 n 73 THR 75 A PRO 76 n 74 PRO 76 A VAL 77 n 75 VAL 77 A ASN 78 n 76 ASN 78 A LEU 79 n 77 LEU 79 A THR 80 n 78 THR 80 A GLU 81 n 79 GLU 81 A PRO 82 n 80 PRO 82 A ALA 83 n 81 ALA 83 A LYS 84 n 82 LYS 84 A LEU 85 n 83 LEU 85 A GLU 86 n 84 GLU 86 A VAL 87 n 85 VAL 87 A LYS 88 n 86 LYS 88 A PHE 89 n 87 PHE 89 A SER 90 n 88 SER 90 A TRP 91 n 89 TRP 91 A PHE 92 n 90 PHE 92 A MSE 93 n 91 MSE 93 A PRO 94 n 92 PRO 94 A SER 95 n 93 SER 95 A ALA 96 n 94 ALA 96 A PRO 97 n 95 PRO 97 A TYR 98 n 96 TYR 98 A HIS 99 n 97 HIS 99 A ILE 100 n 98 ILE 100 A LEU 101 n 99 LEU 101 A ALA 102 n 100 ALA 102 A THR 103 n 101 THR 103 A ASP 104 n 102 ASP 104 A TYR 105 n 103 TYR 105 A GLU 106 n 104 GLU 106 A ASN 107 n 105 ASN 107 A TYR 108 n 106 TYR 108 A ALA 109 n 107 ALA 109 A LEU 110 n 108 LEU 110 A VAL 111 n 109 VAL 111 A TYR 112 n 110 TYR 112 A SER 113 n 111 SER 113 A CYS 114 n 112 CYS 114 A THR 115 n 113 THR 115 A SER 116 n 114 SER 116 A ILE 117 n 115 ILE 117 A SER 118 n 116 SER 118 A GLN 119 n 117 GLN 119 A SER 120 n 118 SER 120 A PHE 121 n 119 PHE 121 A HIS 122 n 120 HIS 122 A VAL 123 n 121 VAL 123 A ASP 124 n 122 ASP 124 A PHE 125 n 123 PHE 125 A ALA 126 n 124 ALA 126 A TRP 127 n 125 TRP 127 A ILE 128 n 126 ILE 128 A LEU 129 n 127 LEU 129 A ALA 130 n 128 ALA 130 A ARG 131 n 129 ARG 131 A ASN 132 n 130 ASN 132 A VAL 133 n 131 VAL 133 A ALA 134 n 132 ALA 134 A LEU 135 n 133 LEU 135 A PRO 136 n 134 PRO 136 A PRO 137 n 135 PRO 137 A GLU 138 n 136 GLU 138 A THR 139 n 137 THR 139 A VAL 140 n 138 VAL 140 A ASP 141 n 139 ASP 141 A SER 142 n 140 SER 142 A LEU 143 n 141 LEU 143 A LYS 144 n 142 LYS 144 A ASN 145 n 143 ASN 145 A ILE 146 n 144 ILE 146 A LEU 147 n 145 LEU 147 A THR 148 n 146 THR 148 A SER 149 n 147 SER 149 A ASN 150 n 148 ASN 150 A ASN 151 n 149 ASN 151 A ILE 152 n 150 ILE 152 A ASP 153 n 151 ASP 153 A VAL 154 n 152 VAL 154 A LYS 155 n 153 LYS 155 A LYS 156 n 154 LYS 156 A MSE 157 n 155 MSE 157 A THR 158 n 156 THR 158 A VAL 159 n 157 VAL 159 A THR 160 n 158 THR 160 A ASP 161 n 159 ASP 161 A GLN 162 n 160 GLN 162 A VAL 163 n 161 VAL 163 A ASN 164 n 162 ASN 164 A CYS 165 n 163 CYS 165 A PRO 166 n 164 PRO 166 A LYS 167 n 165 LYS 167 A LEU 168 n 166 LEU 168 A n 167 169 A n 168 170 A n 169 171 A n 170 172 A n 171 173 A n 172 174 A n 173 175 A n 174 176 A author_defined_assembly 1 monomeric A MSE 49 SELENOMETHIONINE A MSE 47 MET A MSE 93 SELENOMETHIONINE A MSE 91 MET A MSE 157 SELENOMETHIONINE A MSE 155 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N HIS 4 A N HIS 2 A O HIS 122 A O HIS 120 A O ALA 130 A O ALA 128 A N TYR 27 A N TYR 25 A N LYS 31 A N LYS 29 A O THR 158 A O THR 156 A N HIS 4 A N HIS 2 A O HIS 122 A O HIS 120 A O LEU 129 A O LEU 127 A N ALA 109 A N ALA 107 A O LEU 110 A O LEU 108 A N ALA 102 A N ALA 100 A O TYR 98 A O TYR 96 A N LEU 85 A N LEU 83 A O GLU 86 A O GLU 84 A N THR 75 A N THR 73 A O ALA 74 A O ALA 72 A N ILE 54 A N ILE 52 A O LYS 55 A O LYS 53 A N SER 47 A N SER 45 A O TYR 46 A O TYR 44 A N GLY 24 A N GLY 22 A N LYS 31 A N LYS 29 A O THR 158 A O THR 156 1 A GLU 50 A GLU 48 0 Y 1 A SER 169 A SER 167 1 Y 1 A ALA 170 A ALA 168 1 Y 1 A HIS 171 A HIS 169 1 Y 1 A HIS 172 A HIS 170 1 Y 1 A HIS 173 A HIS 171 1 Y 1 A HIS 174 A HIS 172 1 Y 1 A HIS 175 A HIS 173 1 Y 1 A HIS 176 A HIS 174 1 Y 1 A A GLU ASN 37 38 -122.77 1 A A C N GLU ASN 50 51 1.00 1 26.90 2.70 111.00 137.90 A A A N CA C ASN ASN ASN 38 38 38 N 1 21.32 2.50 121.70 143.02 A A A C N CA MSE GLU GLU 49 50 50 Y 1 A A C N GLU ASN 50 51 -0.341 0.023 1.336 0.995 Y 1 A TYR 105 63.39 -25.41 1 A ASN 107 -133.73 -52.38 1 A SER 118 64.43 174.28 22.551 0.790 0.000 0.000 0.790 0.000 -1.570 0.953 0.944 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.226 0.187 0.189 0.189 1.800 30.000 860 17254 17013 5.100 98.650 2.714 0.085 RANDOM 1 THROUGHOUT 0.000 FOURIER SYNTHESIS 0.137 0.130 0.800 0.800 1.200 Model of uncomplexed ApoD Engh & Huber MASK 1.800 30.000 235 1585 23 0 1327 0.014 0.022 1379 1.691 1.961 1888 7.526 5.000 163 40.310 25.556 63 14.280 15.000 224 22.649 15.000 4 0.104 0.200 212 0.006 0.020 1045 0.210 0.200 590 0.312 0.200 951 0.135 0.200 176 0.193 0.200 43 0.215 0.200 12 1.107 1.500 857 1.738 2.000 1358 2.794 3.000 600 4.265 4.500 530 0.314 0.211 1.847 89 1074 1163 20 94.400 1.800 46.575 2HZQ 17254 17084 0 3.000 0.07 0.07 1 6.600 11.300 98.700 0.308 1.80 1.90 2.3 26431 2350 0.308 11.20 95.30 0.215 1.90 2.01 3.5 24905 2236 0.215 11.10 97.50 0.136 2.01 2.15 5.3 23856 2188 0.136 10.90 98.90 0.106 2.15 2.32 6.4 22574 2053 0.106 11.00 99.20 0.093 2.32 2.55 7.4 21103 1891 0.093 11.20 100.00 0.083 2.55 2.85 7.2 19866 1730 0.083 11.50 100.00 0.064 2.85 3.29 9.2 17885 1572 0.064 11.40 100.00 0.049 3.29 4.02 10.7 15037 1332 0.049 11.30 100.00 0.046 4.02 5.69 11.8 14181 1073 0.046 13.20 100.00 0.049 5.69 49.21 8.1 7562 659 0.049 11.50 99.30 data scaling Phil Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/INDEX.html SCALA other phasing Charles R crk@agouron.com http://www.msg.ucsf.edu/local/programs/epmr/epmr.html EPMR other refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data collection ADSC Quantum data reduction MOSFLM phasing REFMAC 5.2.0003 Crystal structure of human apolipoprotein D (ApoD) in complex with progesterone 1 N N 2 N N 3 N N A ASP 18 A ASP 16 HELX_P A TYR 22 A TYR 20 5 1 5 A PRO 136 A PRO 134 HELX_P A ASN 150 A ASN 148 1 2 15 disulf 2.054 A CYS 8 A SG CYS 6 1_555 A CYS 114 A SG CYS 112 1_555 disulf 1.985 A CYS 41 A SG CYS 39 1_555 A CYS 165 A SG CYS 163 1_555 covale 1.332 both A LEU 48 A C LEU 46 1_555 A MSE 49 A N MSE 47 1_555 covale 1.327 both A MSE 49 A C MSE 47 1_555 A GLU 50 A N GLU 48 1_555 covale 1.330 both A PHE 92 A C PHE 90 1_555 A MSE 93 A N MSE 91 1_555 covale 1.340 both A MSE 93 A C MSE 91 1_555 A PRO 94 A N PRO 92 1_555 covale 1.332 both A LYS 156 A C LYS 154 1_555 A MSE 157 A N MSE 155 1_555 covale 1.332 both A MSE 157 A C MSE 155 1_555 A THR 158 A N THR 156 1_555 TRANSPORT PROTEIN lipocalin, beta barrel, bilin-binding protein, transport protein APOD_HUMAN UNP 1 23 P05090 FHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQELRADGTVNQIEGEATPVNLTEP AKLEVKFSWFMPSAPYWILATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQ VNCPKLS 23 189 2HZQ 3 169 P05090 A 1 1 167 1 LEU engineered mutation PRO 23 2HZQ A P05090 UNP 43 21 1 MET modified residue MSE 49 2HZQ A P05090 UNP 69 47 1 MET modified residue MSE 93 2HZQ A P05090 UNP 113 91 1 TRP engineered mutation HIS 99 2HZQ A P05090 UNP 119 97 1 CYS engineered mutation SER 116 2HZQ A P05090 UNP 136 114 1 ILE engineered mutation SER 118 2HZQ A P05090 UNP 138 116 1 LEU engineered mutation SER 120 2HZQ A P05090 UNP 140 118 1 PRO engineered mutation VAL 133 2HZQ A P05090 UNP 153 131 1 ASN engineered mutation ALA 134 2HZQ A P05090 UNP 154 132 1 MET modified residue MSE 157 2HZQ A P05090 UNP 177 155 1 expression tag ALA 170 2HZQ A P05090 UNP 168 1 expression tag HIS 171 2HZQ A P05090 UNP 169 1 expression tag HIS 172 2HZQ A P05090 UNP 170 1 expression tag HIS 173 2HZQ A P05090 UNP 171 1 expression tag HIS 174 2HZQ A P05090 UNP 172 1 expression tag HIS 175 2HZQ A P05090 UNP 173 1 expression tag HIS 176 2HZQ A P05090 UNP 174 4 10 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A HIS 4 A HIS 2 A LEU 5 A LEU 3 A PHE 121 A PHE 119 A ALA 130 A ALA 128 A GLY 24 A GLY 22 A LYS 31 A LYS 29 A THR 158 A THR 156 A VAL 159 A VAL 157 A HIS 4 A HIS 2 A LEU 5 A LEU 3 A PHE 121 A PHE 119 A ALA 130 A ALA 128 A TYR 108 A TYR 106 A SER 116 A SER 114 A ALA 96 A ALA 94 A THR 103 A THR 101 A LYS 84 A LYS 82 A LYS 88 A LYS 86 A VAL 67 A VAL 65 A PRO 76 A PRO 74 A ILE 54 A ILE 52 A LEU 61 A LEU 59 A ARG 40 A ARG 38 A LEU 48 A LEU 46 A GLY 24 A GLY 22 A LYS 31 A LYS 29 A THR 158 A THR 156 A VAL 159 A VAL 157 BINDING SITE FOR RESIDUE STR A 300 A STR 300 Software 8 A THR 34 A THR 32 8 1_555 A ALA 44 A ALA 42 8 1_555 A TYR 46 A TYR 44 8 1_555 A ASN 58 A ASN 56 8 1_555 A PHE 89 A PHE 87 8 1_555 A TYR 98 A TYR 96 8 1_555 A LEU 129 A LEU 127 8 1_555 A HOH 461 C HOH 8 1_555 96 P 43 21 2