0.017361 0.000000 0.000000 0.000000 0.011640 0.000000 0.000000 0.000000 0.021575 0.00000 0.00000 0.00000 Hatada, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90. 90. 90. 57.600 85.911 46.349 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C33 H49 N2 O12 P S 728.787 DIETHYL ({4-[(2S,3R)-2-({[(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YLOXY]CARBONYL}AMINO)-3-HYDROXY-4-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}BUTYL]PHENOXY}METHYL)PHOSPHONATE non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N O N 186 S C N 187 N C Y 188 N C Y 189 N C Y 190 N C Y 191 N C N 192 N C N 193 N P N 194 N O N 195 N C N 196 N C N 197 N O N 198 N O N 199 N C N 200 N C Y 201 N C Y 202 N C N 203 R C N 204 N O N 205 N C N 206 S N N 207 N C N 208 N C N 209 N C N 210 N C N 211 N S N 212 N O N 213 N O Y 214 N C Y 215 N C Y 216 N C Y 217 N C N 218 N O N 219 N C Y 220 N C Y 221 N C N 222 N C N 223 N O N 224 N O N 225 S C N 226 N C N 227 N O N 228 R C N 229 N O N 230 N C N 231 N C N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C N 286 N C N 287 N C N 288 N C N 289 N O N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C N 308 N C N 309 N C N 310 N C N 311 N N N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C N 333 N C N 334 N S N 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C N 376 N C N 377 N C N 378 N O N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N N N 389 S C N 390 N C N 391 N O N 392 N C N 393 N O N 394 N O N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N N N 403 S C N 404 N C N 405 N O N 406 R C N 407 N O N 408 N C N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N N N 420 S C N 421 N C N 422 N O N 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N N Y 428 N C Y 429 N C Y 430 N C Y 431 N C Y 432 N C N 433 N O N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N N N 447 S C N 448 N C N 449 N O N 450 N C Y 451 N C Y 452 N C Y 453 N C Y 454 N C Y 455 N C Y 456 N C N 457 N O N 458 N O N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N N N 471 S C N 472 N C N 473 N O N 474 N C N 475 N C N 476 N C N 477 N O N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing Y 188 N doub Y 189 N sing Y 190 N sing N 191 N sing Y 192 N doub N 193 N sing Y 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing Y 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N doub N 240 N sing N 241 N doub Y 242 N doub Y 243 N sing Y 244 N doub N 245 N sing Y 246 N sing N 247 N sing N 248 N sing Y 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing Y 418 N doub Y 419 N sing Y 420 N sing N 421 N sing Y 422 N doub Y 423 N sing Y 424 N sing N 425 N sing Y 426 N sing Y 427 N doub N 428 N sing Y 429 N doub N 430 N sing Y 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N doub N 442 N sing N 443 N sing N 444 N sing N 445 N sing Y 446 N doub Y 447 N sing Y 448 N sing N 449 N sing Y 450 N doub N 451 N sing Y 452 N doub N 453 N sing Y 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N doub N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 363 635 647 10.1016/j.jmb.2006.07.073 16979654 Suppression of HIV-1 Protease Inhibitor Resistance by Phosphonate-mediated Solvent Anchoring. 2006 10.2210/pdb2i4w/pdb pdb_00002i4w 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100. 1 IMAGE PLATE 2001-09-03 RIGAKU RAXIS IV Osmic mirrors SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU300 10831.809 Protease 3.4.23.16 2 man polymer 728.787 DIETHYL ({4-[(2S,3R)-2-({[(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YLOXY]CARBONYL}AMINO)-3-HYDROXY-4-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}BUTYL]PHENOXY}METHYL)PHOSPHONATE 1 syn non-polymer 18.015 water 180 nat water no no PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGMTLNF PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGMTLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia sample gag 11676 Human immunodeficiency virus 1 562 Escherichia coli 1 2.65 53.50 VAPOR DIFFUSION 6.5 0.2M Mg Acetate, 0.1M Na Cacodylate, 20% PEG 8000, pH 6.5, VAPOR DIFFUSION, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Derived calculations Version format compliance Data collection Database references Derived calculations 1 0 2007-08-28 1 1 2011-07-13 1 2 2024-02-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2006-08-22 REL KGQ DIETHYL ({4-[(2S,3R)-2-({[(3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YLOXY]CARBONYL}AMINO)-3-HYDROXY-4-{ISOBUTYL[(4-METHOXYPHENYL)SULFONYL]AMINO}BUTYL]PHENOXY}METHYL)PHOSPHONATE HOH water KGQ 300 2 KGQ KGQ 300 B H2O 3 3 HOH HOH 100 A H2O 6 3 HOH HOH 101 A H2O 9 3 HOH HOH 102 A H2O 13 3 HOH HOH 103 A H2O 16 3 HOH HOH 104 A H2O 17 3 HOH HOH 105 A H2O 18 3 HOH HOH 106 A H2O 20 3 HOH HOH 107 A H2O 24 3 HOH HOH 108 A H2O 28 3 HOH HOH 109 A H2O 30 3 HOH HOH 110 A H2O 32 3 HOH HOH 111 A H2O 39 3 HOH HOH 112 A H2O 40 3 HOH HOH 113 A H2O 42 3 HOH HOH 114 A H2O 44 3 HOH HOH 115 A H2O 46 3 HOH HOH 116 A H2O 47 3 HOH HOH 117 A H2O 54 3 HOH HOH 118 A H2O 56 3 HOH HOH 119 A H2O 57 3 HOH HOH 120 A H2O 61 3 HOH HOH 121 A H2O 62 3 HOH HOH 122 A H2O 63 3 HOH HOH 123 A H2O 72 3 HOH HOH 124 A H2O 73 3 HOH HOH 125 A H2O 77 3 HOH HOH 126 A H2O 80 3 HOH HOH 127 A H2O 83 3 HOH HOH 128 A H2O 85 3 HOH HOH 129 A H2O 88 3 HOH HOH 130 A H2O 93 3 HOH HOH 131 A H2O 96 3 HOH HOH 132 A H2O 98 3 HOH HOH 133 A H2O 100 3 HOH HOH 134 A H2O 101 3 HOH HOH 135 A H2O 103 3 HOH HOH 136 A H2O 104 3 HOH HOH 137 A H2O 106 3 HOH HOH 138 A H2O 108 3 HOH HOH 139 A H2O 111 3 HOH HOH 140 A H2O 112 3 HOH HOH 141 A H2O 113 3 HOH HOH 142 A H2O 114 3 HOH HOH 143 A H2O 115 3 HOH HOH 144 A H2O 117 3 HOH HOH 145 A H2O 119 3 HOH HOH 146 A H2O 123 3 HOH HOH 147 A H2O 125 3 HOH HOH 148 A H2O 126 3 HOH HOH 149 A H2O 131 3 HOH HOH 150 A H2O 134 3 HOH HOH 151 A H2O 138 3 HOH HOH 152 A H2O 139 3 HOH HOH 153 A H2O 140 3 HOH HOH 154 A H2O 141 3 HOH HOH 155 A H2O 149 3 HOH HOH 156 A H2O 152 3 HOH HOH 157 A H2O 153 3 HOH HOH 158 A H2O 154 3 HOH HOH 159 A H2O 155 3 HOH HOH 160 A H2O 161 3 HOH HOH 161 A H2O 165 3 HOH HOH 162 A H2O 167 3 HOH HOH 163 A H2O 170 3 HOH HOH 164 A H2O 173 3 HOH HOH 165 A H2O 179 3 HOH HOH 166 A H2O 182 3 HOH HOH 167 A H2O 186 3 HOH HOH 168 A H2O 187 3 HOH HOH 169 A H2O 203 3 HOH HOH 170 A H2O 204 3 HOH HOH 171 A H2O 207 3 HOH HOH 172 A H2O 208 3 HOH HOH 173 A H2O 215 3 HOH HOH 174 A H2O 217 3 HOH HOH 175 A H2O 218 3 HOH HOH 176 A H2O 221 3 HOH HOH 177 A H2O 1 3 HOH HOH 301 B H2O 2 3 HOH HOH 302 B H2O 4 3 HOH HOH 303 B H2O 5 3 HOH HOH 304 B H2O 7 3 HOH HOH 305 B H2O 8 3 HOH HOH 306 B H2O 10 3 HOH HOH 307 B H2O 11 3 HOH HOH 308 B H2O 12 3 HOH HOH 309 B H2O 14 3 HOH HOH 310 B H2O 15 3 HOH HOH 311 B H2O 21 3 HOH HOH 312 B H2O 22 3 HOH HOH 313 B H2O 23 3 HOH HOH 314 B H2O 25 3 HOH HOH 315 B H2O 26 3 HOH HOH 316 B H2O 27 3 HOH HOH 317 B H2O 29 3 HOH HOH 318 B H2O 33 3 HOH HOH 319 B H2O 34 3 HOH HOH 320 B H2O 35 3 HOH HOH 321 B H2O 36 3 HOH HOH 322 B H2O 37 3 HOH HOH 323 B H2O 38 3 HOH HOH 324 B H2O 41 3 HOH HOH 325 B H2O 45 3 HOH HOH 326 B H2O 48 3 HOH HOH 327 B H2O 49 3 HOH HOH 328 B H2O 51 3 HOH HOH 329 B H2O 52 3 HOH HOH 330 B H2O 53 3 HOH HOH 331 B H2O 55 3 HOH HOH 332 B H2O 58 3 HOH HOH 333 B H2O 59 3 HOH HOH 334 B H2O 64 3 HOH HOH 335 B H2O 65 3 HOH HOH 336 B H2O 66 3 HOH HOH 337 B H2O 67 3 HOH HOH 338 B H2O 69 3 HOH HOH 339 B H2O 70 3 HOH HOH 340 B H2O 71 3 HOH HOH 341 B H2O 74 3 HOH HOH 342 B H2O 76 3 HOH HOH 343 B H2O 78 3 HOH HOH 344 B H2O 79 3 HOH HOH 345 B H2O 81 3 HOH HOH 346 B H2O 82 3 HOH HOH 347 B H2O 84 3 HOH HOH 348 B H2O 86 3 HOH HOH 349 B H2O 87 3 HOH HOH 350 B H2O 89 3 HOH HOH 351 B H2O 90 3 HOH HOH 352 B H2O 92 3 HOH HOH 353 B H2O 94 3 HOH HOH 354 B H2O 95 3 HOH HOH 355 B H2O 97 3 HOH HOH 356 B H2O 99 3 HOH HOH 357 B H2O 102 3 HOH HOH 358 B H2O 107 3 HOH HOH 359 B H2O 110 3 HOH HOH 360 B H2O 116 3 HOH HOH 361 B H2O 118 3 HOH HOH 362 B H2O 120 3 HOH HOH 363 B H2O 121 3 HOH HOH 364 B H2O 122 3 HOH HOH 365 B H2O 124 3 HOH HOH 366 B H2O 128 3 HOH HOH 367 B H2O 130 3 HOH HOH 368 B H2O 132 3 HOH HOH 369 B H2O 133 3 HOH HOH 370 B H2O 136 3 HOH HOH 371 B H2O 137 3 HOH HOH 372 B H2O 143 3 HOH HOH 373 B H2O 145 3 HOH HOH 374 B H2O 150 3 HOH HOH 375 B H2O 151 3 HOH HOH 376 B H2O 157 3 HOH HOH 377 B H2O 158 3 HOH HOH 378 B H2O 160 3 HOH HOH 379 B H2O 163 3 HOH HOH 380 B H2O 166 3 HOH HOH 381 B H2O 168 3 HOH HOH 382 B H2O 171 3 HOH HOH 383 B H2O 176 3 HOH HOH 384 B H2O 177 3 HOH HOH 385 B H2O 184 3 HOH HOH 386 B H2O 189 3 HOH HOH 387 B H2O 192 3 HOH HOH 388 B H2O 193 3 HOH HOH 389 B H2O 194 3 HOH HOH 390 B H2O 195 3 HOH HOH 391 B H2O 196 3 HOH HOH 392 B H2O 198 3 HOH HOH 393 B H2O 199 3 HOH HOH 394 B H2O 200 3 HOH HOH 395 B H2O 202 3 HOH HOH 396 B H2O 206 3 HOH HOH 397 B H2O 209 3 HOH HOH 398 B H2O 212 3 HOH HOH 399 B H2O 214 3 HOH HOH 400 B H2O 219 3 HOH HOH 401 B H2O 220 3 HOH HOH 402 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A MET 95 n 95 MET 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 201 n 1 PRO 201 B GLN 202 n 2 GLN 202 B ILE 203 n 3 ILE 203 B THR 204 n 4 THR 204 B LEU 205 n 5 LEU 205 B TRP 206 n 6 TRP 206 B GLN 207 n 7 GLN 207 B ARG 208 n 8 ARG 208 B PRO 209 n 9 PRO 209 B LEU 210 n 10 LEU 210 B VAL 211 n 11 VAL 211 B THR 212 n 12 THR 212 B ILE 213 n 13 ILE 213 B LYS 214 n 14 LYS 214 B ILE 215 n 15 ILE 215 B GLY 216 n 16 GLY 216 B GLY 217 n 17 GLY 217 B GLN 218 n 18 GLN 218 B LEU 219 n 19 LEU 219 B LYS 220 n 20 LYS 220 B GLU 221 n 21 GLU 221 B ALA 222 n 22 ALA 222 B LEU 223 n 23 LEU 223 B LEU 224 n 24 LEU 224 B ASP 225 n 25 ASP 225 B THR 226 n 26 THR 226 B GLY 227 n 27 GLY 227 B ALA 228 n 28 ALA 228 B ASP 229 n 29 ASP 229 B ASP 230 n 30 ASP 230 B THR 231 n 31 THR 231 B VAL 232 n 32 VAL 232 B LEU 233 n 33 LEU 233 B GLU 234 n 34 GLU 234 B GLU 235 n 35 GLU 235 B MET 236 n 36 MET 236 B SER 237 n 37 SER 237 B LEU 238 n 38 LEU 238 B PRO 239 n 39 PRO 239 B GLY 240 n 40 GLY 240 B ARG 241 n 41 ARG 241 B TRP 242 n 42 TRP 242 B LYS 243 n 43 LYS 243 B PRO 244 n 44 PRO 244 B LYS 245 n 45 LYS 245 B MET 246 n 46 MET 246 B ILE 247 n 47 ILE 247 B GLY 248 n 48 GLY 248 B GLY 249 n 49 GLY 249 B ILE 250 n 50 ILE 250 B GLY 251 n 51 GLY 251 B GLY 252 n 52 GLY 252 B PHE 253 n 53 PHE 253 B ILE 254 n 54 ILE 254 B LYS 255 n 55 LYS 255 B VAL 256 n 56 VAL 256 B ARG 257 n 57 ARG 257 B GLN 258 n 58 GLN 258 B TYR 259 n 59 TYR 259 B ASP 260 n 60 ASP 260 B GLN 261 n 61 GLN 261 B ILE 262 n 62 ILE 262 B LEU 263 n 63 LEU 263 B ILE 264 n 64 ILE 264 B GLU 265 n 65 GLU 265 B ILE 266 n 66 ILE 266 B CYS 267 n 67 CYS 267 B GLY 268 n 68 GLY 268 B HIS 269 n 69 HIS 269 B LYS 270 n 70 LYS 270 B ALA 271 n 71 ALA 271 B ILE 272 n 72 ILE 272 B GLY 273 n 73 GLY 273 B THR 274 n 74 THR 274 B VAL 275 n 75 VAL 275 B LEU 276 n 76 LEU 276 B VAL 277 n 77 VAL 277 B GLY 278 n 78 GLY 278 B PRO 279 n 79 PRO 279 B THR 280 n 80 THR 280 B PRO 281 n 81 PRO 281 B VAL 282 n 82 VAL 282 B ASN 283 n 83 ASN 283 B ILE 284 n 84 ILE 284 B ILE 285 n 85 ILE 285 B GLY 286 n 86 GLY 286 B ARG 287 n 87 ARG 287 B ASN 288 n 88 ASN 288 B LEU 289 n 89 LEU 289 B LEU 290 n 90 LEU 290 B THR 291 n 91 THR 291 B GLN 292 n 92 GLN 292 B ILE 293 n 93 ILE 293 B GLY 294 n 94 GLY 294 B MET 295 n 95 MET 295 B THR 296 n 96 THR 296 B LEU 297 n 97 LEU 297 B ASN 298 n 98 ASN 298 B PHE 299 n 99 PHE 299 B author_and_software_defined_assembly PISA,PQS 2 dimeric 5200 -24 9160 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 297 B O LEU 97 B O ASN 298 B O ASN 98 A N THR 96 A N THR 96 A N LEU 97 A N LEU 97 B O ILE 203 B O ILE 3 A N LYS 45 A N LYS 45 A O VAL 56 A O VAL 56 A N ILE 64 A N ILE 64 A O ALA 71 A O ALA 71 A O LEU 76 A O LEU 76 A N LEU 33 A N LEU 33 A N VAL 32 A N VAL 32 A O ILE 84 A O ILE 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O ALA 22 A O ALA 22 A N VAL 11 A N VAL 11 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 B N LYS 243 B N LYS 43 B O GLN 258 B O GLN 58 B N ILE 264 B N ILE 64 B O ALA 271 B O ALA 71 B O LEU 276 B O LEU 76 B N LEU 233 B N LEU 33 B N VAL 232 B N VAL 32 B O ILE 284 B O ILE 84 B O ILE 285 B O ILE 85 B N LEU 223 B N LEU 23 B O LYS 220 B O LYS 20 B N ILE 213 B N ILE 13 B N LYS 214 B N LYS 14 B O GLU 265 B O GLU 65 0.252 0.224 1.55 10.0 3290 32864 RANDOM 1 THROUGHOUT 2.0 MOLECULAR REPLACEMENT Engh & Huber 1.55 10.0 180 1749 49 0 1520 1.45 24.5 2I4W 36883 2.0 1 data collection CrystalClear phasing AMoRE refinement X-PLOR 3.851 data reduction d*TREK data scaling d*TREK HIV-1 protease WT with GS-8374 1 N N 1 N N 2 N N 3 N N 3 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 2 3 B GLY 286 B GLY 86 HELX_P B THR 291 B THR 91 1 3 6 HYDROLASE HIV-1 protease inhibitor, hydrolase POL_HV1PV UNP 1 500 P03368 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 500 598 2I4W 1 99 P03368 A 1 1 99 500 598 2I4W 201 299 P03368 B 1 1 99 1 CYS conflict MET 95 2I4W A P03368 UNP 594 95 2 CYS conflict MET 295 2I4W B P03368 UNP 594 95 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 296 B THR 96 B ASN 298 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 202 B GLN 2 B ILE 203 B ILE 3 A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A THR 31 A THR 31 A LEU 33 A LEU 33 A ILE 84 A ILE 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 243 B LYS 43 B GLY 248 B GLY 48 B PHE 253 B PHE 53 B ILE 266 B ILE 66 B HIS 269 B HIS 69 B VAL 277 B VAL 77 B VAL 232 B VAL 32 B LEU 233 B LEU 33 B ILE 284 B ILE 84 B ILE 285 B ILE 85 B GLN 218 B GLN 18 B LEU 224 B LEU 24 B LEU 210 B LEU 10 B ILE 215 B ILE 15 B PHE 253 B PHE 53 B ILE 266 B ILE 66 BINDING SITE FOR RESIDUE KGQ B 300 B KGQ 300 Software 22 A ASP 25 A ASP 25 22 1_555 A GLY 27 A GLY 27 22 1_555 A ALA 28 A ALA 28 22 1_555 A ASP 29 A ASP 29 22 1_555 A ASP 30 A ASP 30 22 1_555 A GLY 48 A GLY 48 22 1_555 A GLY 49 A GLY 49 22 1_555 A PRO 81 A PRO 81 22 1_555 A VAL 82 A VAL 82 22 1_555 A ILE 84 A ILE 84 22 1_555 A HOH 106 D HOH 22 1_555 A HOH 148 D HOH 22 1_555 B ASP 225 B ASP 25 22 1_555 B GLY 227 B GLY 27 22 1_555 B ALA 228 B ALA 28 22 1_555 B ASP 229 B ASP 29 22 1_555 B ASP 230 B ASP 30 22 1_555 B GLY 248 B GLY 48 22 1_555 B GLY 249 B GLY 49 22 1_555 B ILE 250 B ILE 50 22 1_555 B PHE 253 B PHE 53 22 1_555 B HOH 313 E HOH 22 1_555 18 P 21 21 2