data_2I8D # _entry.id 2I8D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2I8D pdb_00002i8d 10.2210/pdb2i8d/pdb RCSB RCSB039265 ? ? WWPDB D_1000039265 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 368040 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2I8D _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-09-01 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of an uncharacterized conserved protein of COG5646 (ZP_00384875.1) from Lactobacillus casei ATCC 334 at 1.69 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2I8D _cell.length_a 47.946 _cell.length_b 69.276 _cell.length_c 90.872 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2I8D _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized conserved protein of COG5646' 14745.034 2 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 3 non-polymer syn 'UNKNOWN LIGAND' ? 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 5 water nat water 18.015 307 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)GSLAEWYQRIPTPDDLTRVESLFAN(MSE)QAQFPQLKLEFKWNQP(MSE)FTDHGTFI(MSE)GFNPSKKHLA VAIEPQT(MSE)TRFIPQIDKAGYDHSQIIRFPWHKPLDEQLIHDLIAYTIDQKKDATTFWQR ; _entity_poly.pdbx_seq_one_letter_code_can ;GMGSLAEWYQRIPTPDDLTRVESLFANMQAQFPQLKLEFKWNQPMFTDHGTFIMGFNPSKKHLAVAIEPQTMTRFIPQID KAGYDHSQIIRFPWHKPLDEQLIHDLIAYTIDQKKDATTFWQR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 368040 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 GLY n 1 4 SER n 1 5 LEU n 1 6 ALA n 1 7 GLU n 1 8 TRP n 1 9 TYR n 1 10 GLN n 1 11 ARG n 1 12 ILE n 1 13 PRO n 1 14 THR n 1 15 PRO n 1 16 ASP n 1 17 ASP n 1 18 LEU n 1 19 THR n 1 20 ARG n 1 21 VAL n 1 22 GLU n 1 23 SER n 1 24 LEU n 1 25 PHE n 1 26 ALA n 1 27 ASN n 1 28 MSE n 1 29 GLN n 1 30 ALA n 1 31 GLN n 1 32 PHE n 1 33 PRO n 1 34 GLN n 1 35 LEU n 1 36 LYS n 1 37 LEU n 1 38 GLU n 1 39 PHE n 1 40 LYS n 1 41 TRP n 1 42 ASN n 1 43 GLN n 1 44 PRO n 1 45 MSE n 1 46 PHE n 1 47 THR n 1 48 ASP n 1 49 HIS n 1 50 GLY n 1 51 THR n 1 52 PHE n 1 53 ILE n 1 54 MSE n 1 55 GLY n 1 56 PHE n 1 57 ASN n 1 58 PRO n 1 59 SER n 1 60 LYS n 1 61 LYS n 1 62 HIS n 1 63 LEU n 1 64 ALA n 1 65 VAL n 1 66 ALA n 1 67 ILE n 1 68 GLU n 1 69 PRO n 1 70 GLN n 1 71 THR n 1 72 MSE n 1 73 THR n 1 74 ARG n 1 75 PHE n 1 76 ILE n 1 77 PRO n 1 78 GLN n 1 79 ILE n 1 80 ASP n 1 81 LYS n 1 82 ALA n 1 83 GLY n 1 84 TYR n 1 85 ASP n 1 86 HIS n 1 87 SER n 1 88 GLN n 1 89 ILE n 1 90 ILE n 1 91 ARG n 1 92 PHE n 1 93 PRO n 1 94 TRP n 1 95 HIS n 1 96 LYS n 1 97 PRO n 1 98 LEU n 1 99 ASP n 1 100 GLU n 1 101 GLN n 1 102 LEU n 1 103 ILE n 1 104 HIS n 1 105 ASP n 1 106 LEU n 1 107 ILE n 1 108 ALA n 1 109 TYR n 1 110 THR n 1 111 ILE n 1 112 ASP n 1 113 GLN n 1 114 LYS n 1 115 LYS n 1 116 ASP n 1 117 ALA n 1 118 THR n 1 119 THR n 1 120 PHE n 1 121 TRP n 1 122 GLN n 1 123 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lactobacillus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lactobacillus casei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1582 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code ZP_00384875 _struct_ref.db_name GB _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession 62513320 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MGSLAEWYQRIPTPDDLTRVESLFANMQAQFPQLKLEFKWNQPMFTDHGTFIMGFNPSKKHLAVAIEPQTMTRFIPQIDK AGYDHSQIIRFPWHKPLDEQLIHDLIAYTIDQKKDATTFWQR ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2I8D A 2 ? 123 ? 62513320 1 ? 122 ? 1 122 2 1 2I8D B 2 ? 123 ? 62513320 1 ? 122 ? 1 122 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2I8D GLY A 1 ? GB 62513320 ? ? 'expression tag' 0 1 1 2I8D MSE A 2 ? GB 62513320 MET 1 'modified residue' 1 2 1 2I8D MSE A 28 ? GB 62513320 MET 27 'modified residue' 27 3 1 2I8D MSE A 45 ? GB 62513320 MET 44 'modified residue' 44 4 1 2I8D MSE A 54 ? GB 62513320 MET 53 'modified residue' 53 5 1 2I8D MSE A 72 ? GB 62513320 MET 71 'modified residue' 71 6 2 2I8D GLY B 1 ? GB 62513320 ? ? 'expression tag' 0 7 2 2I8D MSE B 2 ? GB 62513320 MET 1 'modified residue' 1 8 2 2I8D MSE B 28 ? GB 62513320 MET 27 'modified residue' 27 9 2 2I8D MSE B 45 ? GB 62513320 MET 44 'modified residue' 44 10 2 2I8D MSE B 54 ? GB 62513320 MET 53 'modified residue' 53 11 2 2I8D MSE B 72 ? GB 62513320 MET 71 'modified residue' 71 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2I8D # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 51.899723 _exptl_crystal.density_Matthews 2.557158 _exptl_crystal.description ? _exptl_crystal.density_meas ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP, NANODROP' _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;1.0M LiCl, 20.0% PEG-6000, 0.1M Citrate, pH 4.0, VAPOR DIFFUSION, SITTING DROP,