0.011045 0.000000 0.000291 0.000000 0.037931 0.000000 0.000000 0.000000 0.025335 0.00000 0.00000 0.00000 Arbing, M.A. Abashidze, M. Hurley, J.M. Zhao, L. Janjua, H. Cunningham, K. Ma, L.C. Xiao, R. Liu, J. Baran, M.C. Acton, T.B. Rost, B. Inouye, M. Woychik, N.A. Montelione, G.T. Hunt, J.F. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 91.51 90.00 90.535 26.364 39.485 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Structure STRUE6 2005 0969-2126 18 996 1010 10.1016/j.str.2010.04.018 20696400 Crystal Structures of Phd-Doc, HigA, and YeeU Establish Multiple Evolutionary Links between Microbial Growth-Regulating Toxin-Antitoxin Systems. 2010 100 1 CCD 2006-07-11 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.97941 1.0 6.90 67242 0.237 1.44 1.630 30.000 11696 98.50 5.70 24-ID-C APS 0.97941 SYNCHROTRON APS BEAMLINE 24-ID-C 10647.538 antitoxin higa 1 man polymer 18.015 water 96 nat water Putative HTH-type transcriptional regulator yddM no yes (MSE)K(MSE)ANHPRPGDIIQESLDELNVSLREFARA(MSE)EIAPSTASRLLTGKAALTPE(MSE)AIKLSVVIGSSP Q(MSE)WLNLQNAWSLAEAEKTVDVSRLRRLVTQ MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAE KTVDVSRLRRLVTQ A ER390 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia coli CFT073 Escherichia sample higa 199310 Escherichia coli 562 Escherichia coli BL21(DE3)+ MAGIC plasmid pET28-HigA 1 2.26 45.59 Under oil. 8.5 5 mM MgSO4, 50 mM Tris pH 8.5, 35% 1,6-Hexanediol, Under oil., temperature 293K 293 Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative software repository Initial release Version format compliance Derived calculations Source and taxonomy Version format compliance Refinement description 1 0 2006-09-26 1 1 2008-05-01 1 2 2011-07-13 1 3 2017-10-18 Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 4.0 Y RCSB Y RCSB 2006-09-13 REL REL 0.172 1.816 100.00 6.20 0.139 1.383 99.80 6.50 0.157 1.622 100.00 6.50 0.190 1.550 99.20 6.50 0.239 1.928 99.30 6.50 0.265 1.739 99.20 6.50 0.288 1.616 99.30 6.40 0.349 1.639 99.70 6.30 0.383 1.543 98.50 6.30 0.428 1.331 98.40 6.10 0.500 1.459 99.70 6.00 0.574 1.376 97.30 5.90 0.673 1.201 99.80 5.60 0.713 1.156 97.30 5.60 0.825 1.167 99.00 5.30 0.802 1.109 95.50 5.00 1.061 98.70 4.80 1.130 95.50 4.60 1.156 97.10 4.20 0.988 95.40 3.80 HOH water HOH 3001 2 HOH HOH 3001 A HOH 3002 2 HOH HOH 3002 A HOH 3003 2 HOH HOH 3003 A HOH 3004 2 HOH HOH 3004 A HOH 3005 2 HOH HOH 3005 A HOH 3006 2 HOH HOH 3006 A HOH 3007 2 HOH HOH 3007 A HOH 3008 2 HOH HOH 3008 A HOH 3009 2 HOH HOH 3009 A HOH 3010 2 HOH HOH 3010 A HOH 3011 2 HOH HOH 3011 A HOH 3012 2 HOH HOH 3012 A HOH 3013 2 HOH HOH 3013 A HOH 3014 2 HOH HOH 3014 A HOH 3015 2 HOH HOH 3015 A HOH 3016 2 HOH HOH 3016 A HOH 3017 2 HOH HOH 3017 A HOH 3018 2 HOH HOH 3018 A HOH 3019 2 HOH HOH 3019 A HOH 3020 2 HOH HOH 3020 A HOH 3021 2 HOH HOH 3021 A HOH 3022 2 HOH HOH 3022 A HOH 3023 2 HOH HOH 3023 A HOH 3024 2 HOH HOH 3024 A HOH 3025 2 HOH HOH 3025 A HOH 3026 2 HOH HOH 3026 A HOH 3027 2 HOH HOH 3027 A HOH 3028 2 HOH HOH 3028 A HOH 3029 2 HOH HOH 3029 A HOH 3030 2 HOH HOH 3030 A HOH 3031 2 HOH HOH 3031 A HOH 3032 2 HOH HOH 3032 A HOH 3033 2 HOH HOH 3033 A HOH 3034 2 HOH HOH 3034 A HOH 3035 2 HOH HOH 3035 A HOH 3036 2 HOH HOH 3036 A HOH 3037 2 HOH HOH 3037 A HOH 3038 2 HOH HOH 3038 A HOH 3039 2 HOH HOH 3039 A HOH 3040 2 HOH HOH 3040 A HOH 3041 2 HOH HOH 3041 A HOH 3042 2 HOH HOH 3042 A HOH 3043 2 HOH HOH 3043 A HOH 3044 2 HOH HOH 3044 A HOH 3045 2 HOH HOH 3045 A HOH 3046 2 HOH HOH 3046 A HOH 3047 2 HOH HOH 3047 A HOH 3048 2 HOH HOH 3048 A HOH 3049 2 HOH HOH 3049 A HOH 3050 2 HOH HOH 3050 A HOH 3051 2 HOH HOH 3051 A HOH 3052 2 HOH HOH 3052 A HOH 3053 2 HOH HOH 3053 A HOH 3054 2 HOH HOH 3054 A HOH 3055 2 HOH HOH 3055 A HOH 3056 2 HOH HOH 3056 A HOH 3057 2 HOH HOH 3057 A HOH 3058 2 HOH HOH 3058 A HOH 3059 2 HOH HOH 3059 A HOH 3060 2 HOH HOH 3060 A HOH 3061 2 HOH HOH 3061 A HOH 3062 2 HOH HOH 3062 A HOH 3063 2 HOH HOH 3063 A HOH 3064 2 HOH HOH 3064 A HOH 3065 2 HOH HOH 3065 A HOH 3066 2 HOH HOH 3066 A HOH 3067 2 HOH HOH 3067 A HOH 3068 2 HOH HOH 3068 A HOH 3069 2 HOH HOH 3069 A HOH 3070 2 HOH HOH 3070 A HOH 3071 2 HOH HOH 3071 A HOH 3072 2 HOH HOH 3072 A HOH 3073 2 HOH HOH 3073 A HOH 3074 2 HOH HOH 3074 A HOH 3075 2 HOH HOH 3075 A HOH 3076 2 HOH HOH 3076 A HOH 3077 2 HOH HOH 3077 A HOH 3078 2 HOH HOH 3078 A HOH 3079 2 HOH HOH 3079 A HOH 3080 2 HOH HOH 3080 A HOH 3081 2 HOH HOH 3081 A HOH 3082 2 HOH HOH 3082 A HOH 3083 2 HOH HOH 3083 A HOH 3084 2 HOH HOH 3084 A HOH 3085 2 HOH HOH 3085 A HOH 3086 2 HOH HOH 3086 A HOH 3087 2 HOH HOH 3087 A HOH 3088 2 HOH HOH 3088 A HOH 3089 2 HOH HOH 3089 A HOH 3090 2 HOH HOH 3090 A HOH 3091 2 HOH HOH 3091 A HOH 3092 2 HOH HOH 3092 A HOH 3093 2 HOH HOH 3093 A HOH 3094 2 HOH HOH 3094 A HOH 3095 2 HOH HOH 3095 A HOH 3096 2 HOH HOH 3096 A 48.700 38.620 4.000 4.000 15.000 15.000 MSE 1 n 1 MSE 1 A LYS 2 n 2 LYS 2 A MSE 3 n 3 MSE 3 A ALA 4 n 4 ALA 4 A ASN 5 n 5 ASN 5 A HIS 6 n 6 HIS 6 A PRO 7 n 7 PRO 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A GLY 10 n 10 GLY 10 A ASP 11 n 11 ASP 11 A ILE 12 n 12 ILE 12 A ILE 13 n 13 ILE 13 A GLN 14 n 14 GLN 14 A GLU 15 n 15 GLU 15 A SER 16 n 16 SER 16 A LEU 17 n 17 LEU 17 A ASP 18 n 18 ASP 18 A GLU 19 n 19 GLU 19 A LEU 20 n 20 LEU 20 A ASN 21 n 21 ASN 21 A VAL 22 n 22 VAL 22 A SER 23 n 23 SER 23 A LEU 24 n 24 LEU 24 A ARG 25 n 25 ARG 25 A GLU 26 n 26 GLU 26 A PHE 27 n 27 PHE 27 A ALA 28 n 28 ALA 28 A ARG 29 n 29 ARG 29 A ALA 30 n 30 ALA 30 A MSE 31 n 31 MSE 31 A GLU 32 n 32 GLU 32 A ILE 33 n 33 ILE 33 A ALA 34 n 34 ALA 34 A PRO 35 n 35 PRO 35 A SER 36 n 36 SER 36 A THR 37 n 37 THR 37 A ALA 38 n 38 ALA 38 A SER 39 n 39 SER 39 A ARG 40 n 40 ARG 40 A LEU 41 n 41 LEU 41 A LEU 42 n 42 LEU 42 A THR 43 n 43 THR 43 A GLY 44 n 44 GLY 44 A LYS 45 n 45 LYS 45 A ALA 46 n 46 ALA 46 A ALA 47 n 47 ALA 47 A LEU 48 n 48 LEU 48 A THR 49 n 49 THR 49 A PRO 50 n 50 PRO 50 A GLU 51 n 51 GLU 51 A MSE 52 n 52 MSE 52 A ALA 53 n 53 ALA 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A LEU 56 n 56 LEU 56 A SER 57 n 57 SER 57 A VAL 58 n 58 VAL 58 A VAL 59 n 59 VAL 59 A ILE 60 n 60 ILE 60 A GLY 61 n 61 GLY 61 A SER 62 n 62 SER 62 A SER 63 n 63 SER 63 A PRO 64 n 64 PRO 64 A GLN 65 n 65 GLN 65 A MSE 66 n 66 MSE 66 A TRP 67 n 67 TRP 67 A LEU 68 n 68 LEU 68 A ASN 69 n 69 ASN 69 A LEU 70 n 70 LEU 70 A GLN 71 n 71 GLN 71 A ASN 72 n 72 ASN 72 A ALA 73 n 73 ALA 73 A TRP 74 n 74 TRP 74 A SER 75 n 75 SER 75 A LEU 76 n 76 LEU 76 A ALA 77 n 77 ALA 77 A GLU 78 n 78 GLU 78 A ALA 79 n 79 ALA 79 A GLU 80 n 80 GLU 80 A LYS 81 n 81 LYS 81 A THR 82 n 82 THR 82 A VAL 83 n 83 VAL 83 A ASP 84 n 84 ASP 84 A VAL 85 n 85 VAL 85 A SER 86 n 86 SER 86 A ARG 87 n 87 ARG 87 A LEU 88 n 88 LEU 88 A ARG 89 n 89 ARG 89 A ARG 90 n 90 ARG 90 A LEU 91 n 91 LEU 91 A VAL 92 n 92 VAL 92 A THR 93 n 93 THR 93 A GLN 94 n 94 GLN 94 A author_defined_assembly 1 monomeric software_defined_assembly PISA,PQS 2 dimeric 3240 -24 10610 A MSE 1 SELENOMETHIONINE A MSE 1 MET A MSE 3 SELENOMETHIONINE A MSE 3 MET A MSE 31 SELENOMETHIONINE A MSE 31 MET A MSE 52 SELENOMETHIONINE A MSE 52 MET A MSE 66 SELENOMETHIONINE A MSE 66 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_655 -x+1,y,-z crystal symmetry operation 90.5350000000 0.0000000000 0.0000000000 1 A SER 62 64.96 -165.32 protein_rep.param water_rep.param ion.param 22.007 3.321 0.000 -2.390 -3.601 0.000 0.280 0.201 0.198 1.630 30.000 506 9805 4.200 82.300 0.904 1 1360.00 MOLECULAR REPLACEMENT 36.819 1.630 30.000 96 823 0 0 727 0.005 1.013 0.34 0.247 1.690 23 580 603 10 0.199 0.247 1.760 39 676 715 10 0.222 0.22 1.840 32 774 806 10 0.203 0.201 1.930 48 873 921 10 0.218 0.202 2.050 49 978 1027 10 0.196 0.19 2.210 31 1045 1076 10 0.238 0.193 2.430 73 1025 1098 10 0.182 0.189 2.790 64 1077 1141 10 0.193 0.193 3.510 64 1100 1164 10 0.188 0.194 40.000 83 1171 1254 10 1.630 30.000 2ICT 11696 0.237 1.442 1 6.900 5.700 98.500 1.63 1.66 544 0.988 1 3.80 95.40 1.66 1.69 578 1.156 1 4.20 97.10 1.69 1.72 546 1.130 1 4.60 95.50 1.72 1.76 590 1.061 1 4.80 98.70 0.802 1.76 1.79 547 1.109 1 5.00 95.50 0.825 1.79 1.84 580 1.167 1 5.30 99.00 0.713 1.84 1.88 610 1.156 1 5.60 97.30 0.673 1.88 1.93 550 1.201 1 5.60 99.80 0.574 1.93 1.99 582 1.376 1 5.90 97.30 0.5 1.99 2.05 602 1.459 1 6.00 99.70 0.428 2.05 2.13 570 1.331 1 6.10 98.40 0.383 2.13 2.21 589 1.543 1 6.30 98.50 0.349 2.21 2.31 580 1.639 1 6.30 99.70 0.288 2.31 2.43 597 1.616 1 6.40 99.30 0.265 2.43 2.59 588 1.739 1 6.50 99.20 0.239 2.59 2.79 596 1.928 1 6.50 99.30 0.19 2.79 3.07 591 1.550 1 6.50 99.20 0.157 3.07 3.51 594 1.622 1 6.50 100.00 0.139 3.51 4.42 630 1.383 1 6.50 99.80 0.172 4.42 30.00 632 1.816 1 6.20 100.00 data reduction Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm DENZO package data scaling Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm SCALEPACK package phasing L. Tong tong@como.bio.columbia.edu 05/01 http://como.bio.columbia.edu/tong/Public/Como/como.html COMO package 1.2 refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns.csb.yale.edu/v1.1/ CNS package data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data collection ADSC QUANTUM Y Putative HTH-type transcriptional regulator yddM Crystal structure of the bacterial antitoxin HigA from Escherichia coli at pH 8.5. Northeast Structural Genomics TARGET ER390. 1 N N 2 N N A ARG 8 A ARG 8 HELX_P A ASN 21 A ASN 21 1 1 14 A SER 23 A SER 23 HELX_P A GLU 32 A GLU 32 1 2 10 A ALA 34 A ALA 34 HELX_P A THR 43 A THR 43 1 3 10 A THR 49 A THR 49 HELX_P A ILE 60 A ILE 60 1 4 12 A SER 63 A SER 63 HELX_P A LYS 81 A LYS 81 1 5 19 covale 1.329 A MSE 1 A C MSE 1 1_555 A LYS 2 A N LYS 2 1_555 covale 1.329 A LYS 2 A C LYS 2 1_555 A MSE 3 A N MSE 3 1_555 covale 1.328 A MSE 3 A C MSE 3 1_555 A ALA 4 A N ALA 4 1_555 covale 1.330 A ALA 30 A C ALA 30 1_555 A MSE 31 A N MSE 31 1_555 covale 1.325 A MSE 31 A C MSE 31 1_555 A GLU 32 A N GLU 32 1_555 covale 1.330 A GLU 51 A C GLU 51 1_555 A MSE 52 A N MSE 52 1_555 covale 1.331 A MSE 52 A C MSE 52 1_555 A ALA 53 A N ALA 53 1_555 covale 1.332 A GLN 65 A C GLN 65 1_555 A MSE 66 A N MSE 66 1_555 covale 1.330 A MSE 66 A C MSE 66 1_555 A TRP 67 A N TRP 67 1_555 DNA BINDING PROTEIN helix-turn-helix, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, DNA BINDING PROTEIN YDDM_ECOLI UNP 1 1 P67699 1 94 2ICT 1 94 P67699 A 1 1 94 5 C 1 2 1