0.014548
0.008399
0.000000
0.000000
0.016799
0.000000
0.000000
0.000000
0.006489
0.00000
0.00000
0.00000
Kim, Y.
Zhou, M.
Moy, S.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
68.737
68.737
154.113
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Crystal Structure of Fructose-Bisphosphate Aldolase, Class I from Porphyromonas gingivalis
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2005-12-17
SBC-3
double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.97869
1.0
19-BM
APS
0.97869
SYNCHROTRON
APS BEAMLINE 19-BM
33956.910
Fructose-bisphosphate aldolase class 1
4.1.2.13
1
man
polymer
18.015
water
128
nat
water
Fructose-biphosphate aldolase class I, FBP aldolase
no
yes
SNA(MSE)NKEQLQQ(MSE)RQAPGFVGALDQSGGSTPKALKAYGIQPDAYQSEEE(MSE)FDLIHQ(MSE)RTR(MSE)
ITSPAFATGKIIGVILFERT(MSE)RGKIEG(MSE)PTADFLWEKRHIVPFLKVDKGLQDEANGVQL(MSE)KPFPELGK
LCEEAVGYHVFGTK(MSE)RSVIKQANEQGIRDIVEQQFQWGKEILSHGLVPILEPEVDIHCPEKAKAEEILKRELLAQL
DK(MSE)TEPV(MSE)LKITIPTVDNFYKEIIEHP(MSE)(MSE)LRVVALSGGYSREQANELLSRNHGVIASFSRALVE
GLSARQTDAEFNA(MSE)LEASIEDVYQASIK
SNAMNKEQLQQMRQAPGFVGALDQSGGSTPKALKAYGIQPDAYQSEEEMFDLIHQMRTRMITSPAFATGKIIGVILFERT
MRGKIEGMPTADFLWEKRHIVPFLKVDKGLQDEANGVQLMKPFPELGKLCEEAVGYHVFGTKMRSVIKQANEQGIRDIVE
QQFQWGKEILSHGLVPILEPEVDIHCPEKAKAEEILKRELLAQLDKMTEPVMLKITIPTVDNFYKEIIEHPMMLRVVALS
GGYSREQANELLSRNHGVIASFSRALVEGLSARQTDAEFNAMLEASIEDVYQASIK
A
APC81103
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Porphyromonas
Porphyromonas gingivalis
W83
Escherichia
Escherichia coli
sample
fbaB
242619
Porphyromonas gingivalis
469008
Escherichia coli BL21(DE3)
BL21DE3
plasmid
pMCSG7
1
3.09
60.24
VAPOR DIFFUSION, SITTING DROP
7.0
1.2 M Ammonium citrate tribasic, 100 mM BTP, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
Midwest Center for Structural Genomics
MCSG
PSI, Protein Structure Initiative
software
repository
Initial release
Version format compliance
Advisory
Source and taxonomy
Version format compliance
Refinement description
1
0
2006-11-14
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
_software.name
Y
RCSB
Y
RCSB
2006-10-14
REL
REL
HOH
water
HOH
1
2
HOH
HOH
294
A
HOH
2
2
HOH
HOH
295
A
HOH
3
2
HOH
HOH
296
A
HOH
4
2
HOH
HOH
297
A
HOH
5
2
HOH
HOH
298
A
HOH
6
2
HOH
HOH
299
A
HOH
7
2
HOH
HOH
300
A
HOH
8
2
HOH
HOH
301
A
HOH
9
2
HOH
HOH
302
A
HOH
10
2
HOH
HOH
303
A
HOH
11
2
HOH
HOH
304
A
HOH
12
2
HOH
HOH
305
A
HOH
13
2
HOH
HOH
306
A
HOH
14
2
HOH
HOH
307
A
HOH
15
2
HOH
HOH
308
A
HOH
16
2
HOH
HOH
309
A
HOH
17
2
HOH
HOH
310
A
HOH
18
2
HOH
HOH
311
A
HOH
19
2
HOH
HOH
312
A
HOH
20
2
HOH
HOH
313
A
HOH
21
2
HOH
HOH
314
A
HOH
22
2
HOH
HOH
315
A
HOH
23
2
HOH
HOH
316
A
HOH
24
2
HOH
HOH
317
A
HOH
25
2
HOH
HOH
318
A
HOH
26
2
HOH
HOH
319
A
HOH
27
2
HOH
HOH
320
A
HOH
28
2
HOH
HOH
321
A
HOH
29
2
HOH
HOH
322
A
HOH
30
2
HOH
HOH
323
A
HOH
31
2
HOH
HOH
324
A
HOH
32
2
HOH
HOH
325
A
HOH
33
2
HOH
HOH
326
A
HOH
34
2
HOH
HOH
327
A
HOH
35
2
HOH
HOH
328
A
HOH
36
2
HOH
HOH
329
A
HOH
37
2
HOH
HOH
330
A
HOH
38
2
HOH
HOH
331
A
HOH
39
2
HOH
HOH
332
A
HOH
40
2
HOH
HOH
333
A
HOH
41
2
HOH
HOH
334
A
HOH
42
2
HOH
HOH
335
A
HOH
43
2
HOH
HOH
336
A
HOH
44
2
HOH
HOH
337
A
HOH
45
2
HOH
HOH
338
A
HOH
46
2
HOH
HOH
339
A
HOH
47
2
HOH
HOH
340
A
HOH
48
2
HOH
HOH
341
A
HOH
49
2
HOH
HOH
342
A
HOH
50
2
HOH
HOH
343
A
HOH
51
2
HOH
HOH
344
A
HOH
52
2
HOH
HOH
345
A
HOH
53
2
HOH
HOH
346
A
HOH
54
2
HOH
HOH
347
A
HOH
55
2
HOH
HOH
348
A
HOH
56
2
HOH
HOH
349
A
HOH
57
2
HOH
HOH
350
A
HOH
58
2
HOH
HOH
351
A
HOH
59
2
HOH
HOH
352
A
HOH
60
2
HOH
HOH
353
A
HOH
61
2
HOH
HOH
354
A
HOH
62
2
HOH
HOH
355
A
HOH
63
2
HOH
HOH
356
A
HOH
64
2
HOH
HOH
357
A
HOH
65
2
HOH
HOH
358
A
HOH
66
2
HOH
HOH
359
A
HOH
67
2
HOH
HOH
360
A
HOH
68
2
HOH
HOH
361
A
HOH
69
2
HOH
HOH
362
A
HOH
70
2
HOH
HOH
363
A
HOH
71
2
HOH
HOH
364
A
HOH
72
2
HOH
HOH
365
A
HOH
73
2
HOH
HOH
366
A
HOH
74
2
HOH
HOH
367
A
HOH
75
2
HOH
HOH
368
A
HOH
76
2
HOH
HOH
369
A
HOH
77
2
HOH
HOH
370
A
HOH
78
2
HOH
HOH
371
A
HOH
79
2
HOH
HOH
372
A
HOH
80
2
HOH
HOH
373
A
HOH
81
2
HOH
HOH
374
A
HOH
82
2
HOH
HOH
375
A
HOH
83
2
HOH
HOH
376
A
HOH
84
2
HOH
HOH
377
A
HOH
85
2
HOH
HOH
378
A
HOH
86
2
HOH
HOH
379
A
HOH
87
2
HOH
HOH
380
A
HOH
88
2
HOH
HOH
381
A
HOH
89
2
HOH
HOH
382
A
HOH
90
2
HOH
HOH
383
A
HOH
91
2
HOH
HOH
384
A
HOH
92
2
HOH
HOH
385
A
HOH
93
2
HOH
HOH
386
A
HOH
94
2
HOH
HOH
387
A
HOH
95
2
HOH
HOH
388
A
HOH
96
2
HOH
HOH
389
A
HOH
97
2
HOH
HOH
390
A
HOH
98
2
HOH
HOH
391
A
HOH
99
2
HOH
HOH
392
A
HOH
100
2
HOH
HOH
393
A
HOH
101
2
HOH
HOH
394
A
HOH
102
2
HOH
HOH
395
A
HOH
103
2
HOH
HOH
396
A
HOH
104
2
HOH
HOH
397
A
HOH
105
2
HOH
HOH
398
A
HOH
106
2
HOH
HOH
399
A
HOH
107
2
HOH
HOH
400
A
HOH
108
2
HOH
HOH
401
A
HOH
109
2
HOH
HOH
402
A
HOH
110
2
HOH
HOH
403
A
HOH
111
2
HOH
HOH
404
A
HOH
112
2
HOH
HOH
405
A
HOH
113
2
HOH
HOH
406
A
HOH
114
2
HOH
HOH
407
A
HOH
115
2
HOH
HOH
408
A
HOH
116
2
HOH
HOH
409
A
HOH
117
2
HOH
HOH
410
A
HOH
118
2
HOH
HOH
411
A
HOH
119
2
HOH
HOH
412
A
HOH
120
2
HOH
HOH
413
A
HOH
121
2
HOH
HOH
414
A
HOH
122
2
HOH
HOH
415
A
HOH
123
2
HOH
HOH
416
A
HOH
124
2
HOH
HOH
417
A
HOH
125
2
HOH
HOH
418
A
HOH
126
2
HOH
HOH
419
A
HOH
127
2
HOH
HOH
420
A
HOH
128
2
HOH
HOH
421
A
n
1
-2
A
ASN
-1
n
2
ASN
-1
A
ALA
0
n
3
ALA
0
A
MSE
1
n
4
MSE
1
A
ASN
2
n
5
ASN
2
A
LYS
3
n
6
LYS
3
A
GLU
4
n
7
GLU
4
A
GLN
5
n
8
GLN
5
A
LEU
6
n
9
LEU
6
A
GLN
7
n
10
GLN
7
A
GLN
8
n
11
GLN
8
A
MSE
9
n
12
MSE
9
A
ARG
10
n
13
ARG
10
A
GLN
11
n
14
GLN
11
A
ALA
12
n
15
ALA
12
A
PRO
13
n
16
PRO
13
A
GLY
14
n
17
GLY
14
A
PHE
15
n
18
PHE
15
A
VAL
16
n
19
VAL
16
A
GLY
17
n
20
GLY
17
A
ALA
18
n
21
ALA
18
A
LEU
19
n
22
LEU
19
A
ASP
20
n
23
ASP
20
A
GLN
21
n
24
GLN
21
A
SER
22
n
25
SER
22
A
GLY
23
n
26
GLY
23
A
GLY
24
n
27
GLY
24
A
SER
25
n
28
SER
25
A
THR
26
n
29
THR
26
A
PRO
27
n
30
PRO
27
A
LYS
28
n
31
LYS
28
A
ALA
29
n
32
ALA
29
A
LEU
30
n
33
LEU
30
A
LYS
31
n
34
LYS
31
A
ALA
32
n
35
ALA
32
A
TYR
33
n
36
TYR
33
A
GLY
34
n
37
GLY
34
A
ILE
35
n
38
ILE
35
A
GLN
36
n
39
GLN
36
A
PRO
37
n
40
PRO
37
A
ASP
38
n
41
ASP
38
A
ALA
39
n
42
ALA
39
A
TYR
40
n
43
TYR
40
A
GLN
41
n
44
GLN
41
A
SER
42
n
45
SER
42
A
GLU
43
n
46
GLU
43
A
GLU
44
n
47
GLU
44
A
GLU
45
n
48
GLU
45
A
MSE
46
n
49
MSE
46
A
PHE
47
n
50
PHE
47
A
ASP
48
n
51
ASP
48
A
LEU
49
n
52
LEU
49
A
ILE
50
n
53
ILE
50
A
HIS
51
n
54
HIS
51
A
GLN
52
n
55
GLN
52
A
MSE
53
n
56
MSE
53
A
ARG
54
n
57
ARG
54
A
THR
55
n
58
THR
55
A
ARG
56
n
59
ARG
56
A
MSE
57
n
60
MSE
57
A
ILE
58
n
61
ILE
58
A
THR
59
n
62
THR
59
A
SER
60
n
63
SER
60
A
PRO
61
n
64
PRO
61
A
ALA
62
n
65
ALA
62
A
PHE
63
n
66
PHE
63
A
ALA
64
n
67
ALA
64
A
THR
65
n
68
THR
65
A
GLY
66
n
69
GLY
66
A
LYS
67
n
70
LYS
67
A
ILE
68
n
71
ILE
68
A
ILE
69
n
72
ILE
69
A
GLY
70
n
73
GLY
70
A
VAL
71
n
74
VAL
71
A
ILE
72
n
75
ILE
72
A
LEU
73
n
76
LEU
73
A
PHE
74
n
77
PHE
74
A
GLU
75
n
78
GLU
75
A
ARG
76
n
79
ARG
76
A
THR
77
n
80
THR
77
A
MSE
78
n
81
MSE
78
A
ARG
79
n
82
ARG
79
A
GLY
80
n
83
GLY
80
A
LYS
81
n
84
LYS
81
A
ILE
82
n
85
ILE
82
A
GLU
83
n
86
GLU
83
A
GLY
84
n
87
GLY
84
A
MSE
85
n
88
MSE
85
A
PRO
86
n
89
PRO
86
A
THR
87
n
90
THR
87
A
ALA
88
n
91
ALA
88
A
ASP
89
n
92
ASP
89
A
PHE
90
n
93
PHE
90
A
LEU
91
n
94
LEU
91
A
TRP
92
n
95
TRP
92
A
GLU
93
n
96
GLU
93
A
LYS
94
n
97
LYS
94
A
ARG
95
n
98
ARG
95
A
HIS
96
n
99
HIS
96
A
ILE
97
n
100
ILE
97
A
VAL
98
n
101
VAL
98
A
PRO
99
n
102
PRO
99
A
PHE
100
n
103
PHE
100
A
LEU
101
n
104
LEU
101
A
LYS
102
n
105
LYS
102
A
VAL
103
n
106
VAL
103
A
ASP
104
n
107
ASP
104
A
LYS
105
n
108
LYS
105
A
GLY
106
n
109
GLY
106
A
LEU
107
n
110
LEU
107
A
GLN
108
n
111
GLN
108
A
ASP
109
n
112
ASP
109
A
GLU
110
n
113
GLU
110
A
ALA
111
n
114
ALA
111
A
ASN
112
n
115
ASN
112
A
GLY
113
n
116
GLY
113
A
VAL
114
n
117
VAL
114
A
GLN
115
n
118
GLN
115
A
LEU
116
n
119
LEU
116
A
MSE
117
n
120
MSE
117
A
LYS
118
n
121
LYS
118
A
PRO
119
n
122
PRO
119
A
PHE
120
n
123
PHE
120
A
PRO
121
n
124
PRO
121
A
GLU
122
n
125
GLU
122
A
LEU
123
n
126
LEU
123
A
GLY
124
n
127
GLY
124
A
LYS
125
n
128
LYS
125
A
LEU
126
n
129
LEU
126
A
CYS
127
n
130
CYS
127
A
GLU
128
n
131
GLU
128
A
GLU
129
n
132
GLU
129
A
ALA
130
n
133
ALA
130
A
VAL
131
n
134
VAL
131
A
GLY
132
n
135
GLY
132
A
TYR
133
n
136
TYR
133
A
HIS
134
n
137
HIS
134
A
VAL
135
n
138
VAL
135
A
PHE
136
n
139
PHE
136
A
GLY
137
n
140
GLY
137
A
THR
138
n
141
THR
138
A
LYS
139
n
142
LYS
139
A
MSE
140
n
143
MSE
140
A
ARG
141
n
144
ARG
141
A
SER
142
n
145
SER
142
A
VAL
143
n
146
VAL
143
A
ILE
144
n
147
ILE
144
A
LYS
145
n
148
LYS
145
A
GLN
146
n
149
GLN
146
A
ALA
147
n
150
ALA
147
A
ASN
148
n
151
ASN
148
A
GLU
149
n
152
GLU
149
A
GLN
150
n
153
GLN
150
A
GLY
151
n
154
GLY
151
A
ILE
152
n
155
ILE
152
A
ARG
153
n
156
ARG
153
A
ASP
154
n
157
ASP
154
A
ILE
155
n
158
ILE
155
A
VAL
156
n
159
VAL
156
A
GLU
157
n
160
GLU
157
A
GLN
158
n
161
GLN
158
A
GLN
159
n
162
GLN
159
A
PHE
160
n
163
PHE
160
A
GLN
161
n
164
GLN
161
A
TRP
162
n
165
TRP
162
A
GLY
163
n
166
GLY
163
A
LYS
164
n
167
LYS
164
A
GLU
165
n
168
GLU
165
A
ILE
166
n
169
ILE
166
A
LEU
167
n
170
LEU
167
A
SER
168
n
171
SER
168
A
HIS
169
n
172
HIS
169
A
GLY
170
n
173
GLY
170
A
LEU
171
n
174
LEU
171
A
VAL
172
n
175
VAL
172
A
PRO
173
n
176
PRO
173
A
ILE
174
n
177
ILE
174
A
LEU
175
n
178
LEU
175
A
GLU
176
n
179
GLU
176
A
PRO
177
n
180
PRO
177
A
GLU
178
n
181
GLU
178
A
VAL
179
n
182
VAL
179
A
ASP
180
n
183
ASP
180
A
ILE
181
n
184
ILE
181
A
HIS
182
n
185
HIS
182
A
CYS
183
n
186
CYS
183
A
PRO
184
n
187
PRO
184
A
GLU
185
n
188
GLU
185
A
LYS
186
n
189
LYS
186
A
ALA
187
n
190
ALA
187
A
LYS
188
n
191
LYS
188
A
ALA
189
n
192
ALA
189
A
GLU
190
n
193
GLU
190
A
GLU
191
n
194
GLU
191
A
ILE
192
n
195
ILE
192
A
LEU
193
n
196
LEU
193
A
LYS
194
n
197
LYS
194
A
ARG
195
n
198
ARG
195
A
GLU
196
n
199
GLU
196
A
LEU
197
n
200
LEU
197
A
LEU
198
n
201
LEU
198
A
ALA
199
n
202
ALA
199
A
GLN
200
n
203
GLN
200
A
LEU
201
n
204
LEU
201
A
ASP
202
n
205
ASP
202
A
LYS
203
n
206
LYS
203
A
MSE
204
n
207
MSE
204
A
THR
205
n
208
THR
205
A
GLU
206
n
209
GLU
206
A
PRO
207
n
210
PRO
207
A
VAL
208
n
211
VAL
208
A
MSE
209
n
212
MSE
209
A
LEU
210
n
213
LEU
210
A
LYS
211
n
214
LYS
211
A
ILE
212
n
215
ILE
212
A
THR
213
n
216
THR
213
A
ILE
214
n
217
ILE
214
A
PRO
215
n
218
PRO
215
A
THR
216
n
219
THR
216
A
VAL
217
n
220
VAL
217
A
ASP
218
n
221
ASP
218
A
ASN
219
n
222
ASN
219
A
PHE
220
n
223
PHE
220
A
TYR
221
n
224
TYR
221
A
LYS
222
n
225
LYS
222
A
GLU
223
n
226
GLU
223
A
ILE
224
n
227
ILE
224
A
ILE
225
n
228
ILE
225
A
GLU
226
n
229
GLU
226
A
HIS
227
n
230
HIS
227
A
PRO
228
n
231
PRO
228
A
MSE
229
n
232
MSE
229
A
MSE
230
n
233
MSE
230
A
LEU
231
n
234
LEU
231
A
ARG
232
n
235
ARG
232
A
VAL
233
n
236
VAL
233
A
VAL
234
n
237
VAL
234
A
ALA
235
n
238
ALA
235
A
LEU
236
n
239
LEU
236
A
SER
237
n
240
SER
237
A
GLY
238
n
241
GLY
238
A
GLY
239
n
242
GLY
239
A
TYR
240
n
243
TYR
240
A
SER
241
n
244
SER
241
A
ARG
242
n
245
ARG
242
A
GLU
243
n
246
GLU
243
A
GLN
244
n
247
GLN
244
A
ALA
245
n
248
ALA
245
A
ASN
246
n
249
ASN
246
A
GLU
247
n
250
GLU
247
A
LEU
248
n
251
LEU
248
A
LEU
249
n
252
LEU
249
A
SER
250
n
253
SER
250
A
ARG
251
n
254
ARG
251
A
ASN
252
n
255
ASN
252
A
HIS
253
n
256
HIS
253
A
GLY
254
n
257
GLY
254
A
VAL
255
n
258
VAL
255
A
ILE
256
n
259
ILE
256
A
ALA
257
n
260
ALA
257
A
SER
258
n
261
SER
258
A
PHE
259
n
262
PHE
259
A
SER
260
n
263
SER
260
A
ARG
261
n
264
ARG
261
A
ALA
262
n
265
ALA
262
A
LEU
263
n
266
LEU
263
A
VAL
264
n
267
VAL
264
A
GLU
265
n
268
GLU
265
A
GLY
266
n
269
GLY
266
A
LEU
267
n
270
LEU
267
A
SER
268
n
271
SER
268
A
ALA
269
n
272
ALA
269
A
ARG
270
n
273
ARG
270
A
GLN
271
n
274
GLN
271
A
THR
272
n
275
THR
272
A
ASP
273
n
276
ASP
273
A
ALA
274
n
277
ALA
274
A
GLU
275
n
278
GLU
275
A
PHE
276
n
279
PHE
276
A
ASN
277
n
280
ASN
277
A
ALA
278
n
281
ALA
278
A
MSE
279
n
282
MSE
279
A
LEU
280
n
283
LEU
280
A
GLU
281
n
284
GLU
281
A
ALA
282
n
285
ALA
282
A
SER
283
n
286
SER
283
A
ILE
284
n
287
ILE
284
A
GLU
285
n
288
GLU
285
A
ASP
286
n
289
ASP
286
A
VAL
287
n
290
VAL
287
A
TYR
288
n
291
TYR
288
A
GLN
289
n
292
GLN
289
A
ALA
290
n
293
ALA
290
A
SER
291
n
294
SER
291
A
ILE
292
n
295
ILE
292
A
LYS
293
n
296
LYS
293
A
0.3703
-0.0435
-0.2977
0.4149
0.1836
0.6291
0.0048
0.0502
-0.0083
0.0025
-0.0330
0.0144
-0.0044
0.0230
0.0283
-0.0835
0.0096
0.0038
0.0036
-0.0217
-0.0552
refined
26.4417
31.1258
61.6001
X-RAY DIFFRACTION
A
1
A
4
A
293
A
296
X-RAY DIFFRACTION
1
author_defined_assembly
2
dimeric
A
MSE
1
SELENOMETHIONINE
A
MSE
4
MET
A
MSE
9
SELENOMETHIONINE
A
MSE
12
MET
A
MSE
46
SELENOMETHIONINE
A
MSE
49
MET
A
MSE
53
SELENOMETHIONINE
A
MSE
56
MET
A
MSE
57
SELENOMETHIONINE
A
MSE
60
MET
A
MSE
78
SELENOMETHIONINE
A
MSE
81
MET
A
MSE
85
SELENOMETHIONINE
A
MSE
88
MET
A
MSE
117
SELENOMETHIONINE
A
MSE
120
MET
A
MSE
140
SELENOMETHIONINE
A
MSE
143
MET
A
MSE
204
SELENOMETHIONINE
A
MSE
207
MET
A
MSE
209
SELENOMETHIONINE
A
MSE
212
MET
A
MSE
229
SELENOMETHIONINE
A
MSE
232
MET
A
MSE
230
SELENOMETHIONINE
A
MSE
233
MET
A
MSE
279
SELENOMETHIONINE
A
MSE
282
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
154.1130000000
A
N
GLN
115
A
N
GLN
118
A
O
VAL
143
A
O
VAL
146
A
N
ILE
144
A
N
ILE
147
A
O
GLU
178
A
O
GLU
181
A
N
LEU
175
A
N
LEU
178
A
O
LYS
211
A
O
LYS
214
A
N
VAL
208
A
N
VAL
211
A
O
LEU
231
A
O
LEU
234
A
N
ALA
235
A
N
ALA
238
A
O
SER
258
A
O
SER
261
A
O
PHE
259
A
O
PHE
262
A
N
ALA
18
A
N
ALA
21
A
N
GLY
17
A
N
GLY
20
A
O
ILE
72
A
O
ILE
75
A
N
VAL
71
A
N
VAL
74
A
O
PHE
100
A
O
PHE
103
A
N
LEU
101
A
N
LEU
104
A
O
GLY
137
A
O
GLY
140
A
N
ILE
82
A
N
ILE
85
A
O
MSE
85
A
O
MSE
88
1
A
HOH
307
B
HOH
1
A
HOH
359
B
HOH
1
A
SER
-2
A
SER
1
1
Y
1
A
A
O
O
HOH
HOH
305
410
1.94
1
A
A
O
O
HOH
HOH
382
383
2.12
1
A
A
O
O
HOH
HOH
341
412
2.13
1
13.94
2.30
111.70
125.64
A
A
A
CD
CE
NZ
LYS
LYS
LYS
102
102
102
A
A
A
N
1
A
A
O
O
HOH
HOH
361
383
2.05
1_555
5_565
1
A
MSE
1
-56.29
-75.27
1
A
ASN
2
-20.55
-61.28
1
A
ASP
20
-98.04
30.73
1
A
ASP
38
B
-17.49
-43.27
1
A
GLN
41
-142.37
15.13
1
A
SER
260
-107.47
-96.91
1
A
SER
260
-107.47
-97.73
35.452
0.51
0.25
0.00
0.51
0.00
-0.76
0.949
0.918
0.23172
0.18167
0.18686
0.18686
2.46
38.89
1612
14343
14343
10.1
99.74
14.105
0.166
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.0
0.0
SAD
0.371
0.251
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
2.46
38.89
128
2454
0
0
2326
0.015
0.022
2510
1.517
1.969
3400
6.022
5.000
322
39.854
25.164
122
18.104
15.000
478
20.415
15.000
16
0.108
0.200
365
0.005
0.020
1938
0.226
0.200
1326
0.189
0.200
158
0.236
0.200
37
0.322
0.200
10
0.806
1.500
1613
1.240
2.000
2519
2.352
3.000
1015
3.800
4.500
881
0.287
0.213
2.521
112
1034
1034
20
2.44
38.89
2IQT
16237
16237
0.0
0.0
0.144
1
7.0
8.5
99.7
0.427
2.44
2.53
3.8
1602
1
6.1
99.8
refinement
REFMAC
5.2.0000
data collection
SBC-Collect
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
HKL-3000
phasing
SHELXCD
phasing
SHELXD
model building
SHELXE
phasing
MLPHARE
phasing
SOLVE
phasing
RESOLVE
phasing
PHENIX
Fructose-bisphosphate aldolase class 1 (E.C.4.1.2.13)
Crystal Structure of Fructose-Bisphosphate Aldolase, Class I from Porphyromonas gingivalis
1
N
N
2
N
N
A
ASN
-1
A
ASN
2
HELX_P
A
ALA
12
A
ALA
15
1
1
14
A
SER
22
A
SER
25
HELX_P
A
GLY
24
A
GLY
27
5
2
3
A
SER
25
A
SER
28
HELX_P
A
TYR
33
A
TYR
36
1
3
9
A
GLN
36
A
GLN
39
HELX_P
A
TYR
40
A
TYR
43
5
4
5
A
SER
42
A
SER
45
HELX_P
A
SER
60
A
SER
63
1
5
19
A
PRO
61
A
PRO
64
HELX_P
A
THR
65
A
THR
68
5
6
5
A
PHE
74
A
PHE
77
HELX_P
A
ARG
79
A
ARG
82
1
7
6
A
THR
87
A
THR
90
HELX_P
A
HIS
96
A
HIS
99
1
8
10
A
GLU
122
A
GLU
125
HELX_P
A
TYR
133
A
TYR
136
1
9
12
A
ASN
148
A
ASN
151
HELX_P
A
SER
168
A
SER
171
1
10
21
A
GLU
185
A
GLU
188
HELX_P
A
MSE
204
A
MSE
207
1
11
20
A
TYR
221
A
TYR
224
HELX_P
A
GLU
226
A
GLU
229
1
12
6
A
SER
241
A
SER
244
HELX_P
A
SER
250
A
SER
253
1
13
10
A
SER
260
A
SER
263
HELX_P
A
GLU
265
A
GLU
268
1
14
6
A
THR
272
A
THR
275
HELX_P
A
LYS
293
A
LYS
296
1
15
22
covale
1.350
A
ALA
0
A
C
ALA
3
1_555
A
MSE
1
A
N
MSE
4
1_555
covale
1.332
A
MSE
1
A
C
MSE
4
1_555
A
ASN
2
A
N
ASN
5
1_555
covale
1.330
A
A
GLN
8
A
C
GLN
11
1_555
A
MSE
9
A
N
MSE
12
1_555
covale
1.325
B
A
GLN
8
A
C
GLN
11
1_555
A
MSE
9
A
N
MSE
12
1_555
covale
1.331
A
MSE
9
A
C
MSE
12
1_555
A
ARG
10
A
N
ARG
13
1_555
covale
1.332
A
GLU
45
A
C
GLU
48
1_555
A
MSE
46
A
N
MSE
49
1_555
covale
1.327
A
MSE
46
A
C
MSE
49
1_555
A
PHE
47
A
N
PHE
50
1_555
covale
1.338
A
GLN
52
A
C
GLN
55
1_555
A
MSE
53
A
N
MSE
56
1_555
covale
1.320
A
MSE
53
A
C
MSE
56
1_555
A
ARG
54
A
N
ARG
57
1_555
covale
1.326
A
ARG
56
A
C
ARG
59
1_555
A
MSE
57
A
N
MSE
60
1_555
covale
1.330
A
MSE
57
A
C
MSE
60
1_555
A
ILE
58
A
N
ILE
61
1_555
covale
1.321
A
THR
77
A
C
THR
80
1_555
A
MSE
78
A
N
MSE
81
1_555
covale
1.325
A
MSE
78
A
C
MSE
81
1_555
A
ARG
79
A
N
ARG
82
1_555
covale
1.319
A
GLY
84
A
C
GLY
87
1_555
A
MSE
85
A
N
MSE
88
1_555
covale
1.352
A
MSE
85
A
C
MSE
88
1_555
A
PRO
86
A
N
PRO
89
1_555
covale
1.333
A
LEU
116
A
C
LEU
119
1_555
A
MSE
117
A
N
MSE
120
1_555
covale
1.334
A
MSE
117
A
C
MSE
120
1_555
A
LYS
118
A
N
LYS
121
1_555
covale
1.327
A
LYS
139
A
C
LYS
142
1_555
A
MSE
140
A
N
MSE
143
1_555
covale
1.323
A
MSE
140
A
C
MSE
143
1_555
A
ARG
141
A
N
ARG
144
1_555
covale
1.336
A
LYS
203
A
C
LYS
206
1_555
A
MSE
204
A
N
MSE
207
1_555
covale
1.323
A
MSE
204
A
C
MSE
207
1_555
A
THR
205
A
N
THR
208
1_555
covale
1.334
A
VAL
208
A
C
VAL
211
1_555
A
MSE
209
A
N
MSE
212
1_555
covale
1.332
A
MSE
209
A
C
MSE
212
1_555
A
LEU
210
A
N
LEU
213
1_555
covale
1.339
A
PRO
228
A
C
PRO
231
1_555
A
MSE
229
A
N
MSE
232
1_555
covale
1.335
A
MSE
229
A
C
MSE
232
1_555
A
MSE
230
A
N
MSE
233
1_555
covale
1.332
A
MSE
230
A
C
MSE
233
1_555
A
LEU
231
A
N
LEU
234
1_555
covale
1.333
A
ALA
278
A
C
ALA
281
1_555
A
MSE
279
A
N
MSE
282
1_555
covale
1.331
A
MSE
279
A
C
MSE
282
1_555
A
LEU
280
A
N
LEU
283
1_555
LYASE
TIM berrel, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, LYASE
ALF1_PORGI
UNP
1
1
P60053
1
293
2IQT
1
293
P60053
A
1
4
296
1
CLONING ARTIFACT
SER
-2
2IQT
A
P60053
UNP
1
1
CLONING ARTIFACT
ASN
-1
2IQT
A
P60053
UNP
2
1
CLONING ARTIFACT
ALA
0
2IQT
A
P60053
UNP
3
1
MET
MODIFIED RESIDUE
MSE
1
2IQT
A
P60053
UNP
1
4
1
MET
MODIFIED RESIDUE
MSE
9
2IQT
A
P60053
UNP
9
12
1
MET
MODIFIED RESIDUE
MSE
46
2IQT
A
P60053
UNP
46
49
1
MET
MODIFIED RESIDUE
MSE
53
2IQT
A
P60053
UNP
53
56
1
MET
MODIFIED RESIDUE
MSE
57
2IQT
A
P60053
UNP
57
60
1
MET
MODIFIED RESIDUE
MSE
78
2IQT
A
P60053
UNP
78
81
1
MET
MODIFIED RESIDUE
MSE
85
2IQT
A
P60053
UNP
85
88
1
MET
MODIFIED RESIDUE
MSE
117
2IQT
A
P60053
UNP
117
120
1
MET
MODIFIED RESIDUE
MSE
140
2IQT
A
P60053
UNP
140
143
1
MET
MODIFIED RESIDUE
MSE
204
2IQT
A
P60053
UNP
204
207
1
MET
MODIFIED RESIDUE
MSE
209
2IQT
A
P60053
UNP
209
212
1
MET
MODIFIED RESIDUE
MSE
229
2IQT
A
P60053
UNP
229
232
1
MET
MODIFIED RESIDUE
MSE
230
2IQT
A
P60053
UNP
230
233
1
MET
MODIFIED RESIDUE
MSE
279
2IQT
A
P60053
UNP
279
282
10
2
anti-parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
VAL
114
A
VAL
117
A
GLN
115
A
GLN
118
A
GLY
137
A
GLY
140
A
ILE
144
A
ILE
147
A
VAL
172
A
VAL
175
A
VAL
179
A
VAL
182
A
VAL
208
A
VAL
211
A
THR
213
A
THR
216
A
MSE
230
A
MSE
233
A
LEU
236
A
LEU
239
A
ILE
256
A
ILE
259
A
PHE
259
A
PHE
262
A
PHE
15
A
PHE
18
A
LEU
19
A
LEU
22
A
ILE
68
A
ILE
71
A
LEU
73
A
LEU
76
A
VAL
98
A
VAL
101
A
LYS
102
A
LYS
105
A
GLY
137
A
GLY
140
A
ILE
144
A
ILE
147
A
LYS
81
A
LYS
84
A
ILE
82
A
ILE
85
A
MSE
85
A
MSE
88
A
PRO
86
A
PRO
89
152
P 31 2 1