1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Tolbert, B.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking US Biochemistry BICHAW 0033 0006-2960 46 1511 1522 10.1021/bi061350m 17279616 NMR Structures of (rGCUGAGGCU)(2) and (rGCGGAUGCU)(2): Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs(,). 2007 10.2210/pdb2iro/pdb pdb_00002iro 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2887.767 5'-R(P*GP*CP*GP*GP*AP*UP*GP*CP*U)-3' 2 syn polymer no no GCGGAUGCU GCGGAUGCU A,B polyribonucleotide n n n n n n n n n -17.319 1 19 A 1 B 17 -4.909 A_G1:C17_B 1 0.825 -0.163 -1.528 -0.565 -10.183 1 19 A 2 B 16 4.500 A_C2:G16_B 2 -3.616 0.872 -0.710 -0.483 -4.266 A 3 B 15 9.632 A_G3:U15_B 3 8.419 7.047 -0.255 -3.332 22.388 10 11 A 4 B 14 -2.399 A_G4:A14_B 4 4.448 6.581 -0.104 -4.652 -22.142 10 11 A 5 B 13 -1.224 A_A5:G13_B 5 3.490 -6.597 0.042 -4.604 4.261 A 6 B 12 10.441 A_U6:G12_B 6 7.960 -7.010 -0.302 -3.339 10.477 1 19 A 7 B 11 4.334 A_G7:C11_B 7 -4.058 -0.948 -0.637 -0.508 16.054 1 19 A 8 B 10 -3.842 A_C8:G10_B 8 -0.687 0.148 -1.495 -0.553 3.275 31.960 A A 1 2 -2.825 B B 17 16 3.336 -1.548 0.565 -1.524 AA_G1C2:G16C17_BB 1 -5.127 9.353 31.520 -2.482 -1.971 3.076 61.664 A A 2 3 15.247 B B 16 15 3.221 15.481 -0.561 -0.081 AA_C2G3:U15G16_BB 2 4.308 -4.243 59.733 -0.789 0.745 2.899 21.299 A A 3 4 1.070 B B 15 14 3.251 0.389 -0.604 -0.626 AA_G3G4:A14U15_BB 3 6.577 -18.085 20.266 -1.847 4.238 3.072 -8.339 A A 4 5 -67.247 B B 14 13 3.796 7.688 0.024 -1.738 AA_G4A5:G13A14_BB 4 -0.184 -1.608 -3.228 -19.428 -0.583 2.792 21.811 A A 5 6 4.318 B B 13 12 3.182 1.612 0.859 -0.459 AA_A5U6:G12G13_BB 5 -5.929 15.879 20.938 -1.801 -4.436 3.045 61.569 A A 6 7 14.124 B B 12 11 3.176 14.336 0.485 -0.066 AA_U6G7:C11G12_BB 6 -4.997 4.924 59.847 -0.715 -0.701 3.313 32.524 A A 7 8 -2.893 B B 11 10 3.366 -1.613 -0.530 -1.579 AA_G7C8:G10C11_BB 7 5.262 -9.438 32.068 -2.529 1.892 database_2 pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2007-02-20 1 1 2008-05-01 1 2 2011-07-13 1 3 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession Similar RNA sequence with GU pairs reversed RCSB Y RCSB 2006-10-16 REL REL natural abundance 13C-1H and 15N-1H HSQC structures with the least restraint violations,structures with the lowest energy 30 15 2D NOESY DQF-COSY 5.18 278 K structures validated by chemical back calculation using the program Nuchemics simulated annealing and restrained molecular dynamics 1 fewest violations,lowest energy 1 mM Duplex, 80 mM NaCl, 0.5 mM Na2EDTA, 10 mM sodium phosphate, pH 5.5, 90%H2O, 10%D2O 90% H2O/10% D2O Brunger et al. structure solution CNS 1.1 Delaglio et al. processing NMRPipe Goddard et al. data analysis Sparky 3 Brunger et al. refinement CNS 1.1 600 Varian INOVA G 1 n 1 G 1 A C 2 n 2 C 2 A G 3 n 3 G 3 A G 4 n 4 G 4 A A 5 n 5 A 5 A U 6 n 6 U 6 A G 7 n 7 G 7 A C 8 n 8 C 8 A U 9 n 9 U 9 A G 10 n 1 G 10 B C 11 n 2 C 11 B G 12 n 3 G 12 B G 13 n 4 G 13 B A 14 n 5 A 14 B U 15 n 6 U 15 B G 16 n 7 G 16 B C 17 n 8 C 17 B U 18 n 9 U 18 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 The NMR Structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2 1 N N 1 N N hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 B C 17 B N3 C 8 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 B C 17 B O2 C 8 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 B C 17 B N4 C 8 1_555 hydrog TYPE_28_PAIR A G 1 A N1 G 1 1_555 B U 18 B O2 U 9 1_555 hydrog TYPE_28_PAIR A G 1 A O6 G 1 1_555 B U 18 B N3 U 9 1_555 hydrog WATSON-CRICK A C 2 A N3 C 2 1_555 B G 16 B N1 G 7 1_555 hydrog WATSON-CRICK A C 2 A N4 C 2 1_555 B G 16 B O6 G 7 1_555 hydrog WATSON-CRICK A C 2 A O2 C 2 1_555 B G 16 B N2 G 7 1_555 hydrog G-U MISPAIR A G 3 A N2 G 3 1_555 B U 15 B O4 U 6 1_555 hydrog G-G MISPAIR A G 3 A N1 G 3 1_555 B G 16 B O6 G 7 1_555 hydrog TYPE_11_PAIR A G 4 A N2 G 4 1_555 B A 14 B N7 A 5 1_555 hydrog TYPE_11_PAIR A G 4 A N3 G 4 1_555 B A 14 B N6 A 5 1_555 hydrog TYPE_11_PAIR A A 5 A N6 A 5 1_555 B G 13 B N3 G 4 1_555 hydrog TYPE_11_PAIR A A 5 A N7 A 5 1_555 B G 13 B N2 G 4 1_555 hydrog U-G MISPAIR A U 6 A O4 U 6 1_555 B G 12 B N2 G 3 1_555 hydrog WATSON-CRICK A G 7 A N1 G 7 1_555 B C 11 B N3 C 2 1_555 hydrog WATSON-CRICK A G 7 A N2 G 7 1_555 B C 11 B O2 C 2 1_555 hydrog WATSON-CRICK A G 7 A O6 G 7 1_555 B C 11 B N4 C 2 1_555 hydrog G-G MISPAIR A G 7 A N1 G 7 1_555 B G 12 B N3 G 3 1_555 hydrog WATSON-CRICK A C 8 A N3 C 8 1_555 B G 10 B N1 G 1 1_555 hydrog WATSON-CRICK A C 8 A N4 C 8 1_555 B G 10 B O6 G 1 1_555 hydrog WATSON-CRICK A C 8 A O2 C 8 1_555 B G 10 B N2 G 1 1_555 hydrog TYPE_28_PAIR A U 9 A N3 U 9 1_555 B G 10 B O6 G 1 1_555 hydrog TYPE_28_PAIR A U 9 A O2 U 9 1_555 B G 10 B N1 G 1 1_555 RNA RNA INTERNAL LOOPS, SHEARED GA PAIRS, SHEARED GU PAIRS, NON CANONICAL PAIRS, THERMODYNAMICS, RNA 2IRO PDB 1 2IRO 1 9 2IRO 1 9 2IRO A 1 1 9 10 18 2IRO 10 18 2IRO B 1 1 9 1 P 1