1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Tolbert, B.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
US
Biochemistry
BICHAW
0033
0006-2960
46
1511
1522
10.1021/bi061350m
17279616
NMR Structures of (rGCUGAGGCU)(2) and (rGCGGAUGCU)(2): Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs(,).
2007
10.2210/pdb2iro/pdb
pdb_00002iro
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2887.767
5'-R(P*GP*CP*GP*GP*AP*UP*GP*CP*U)-3'
2
syn
polymer
no
no
GCGGAUGCU
GCGGAUGCU
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
n
-17.319
1
19
A
1
B
17
-4.909
A_G1:C17_B
1
0.825
-0.163
-1.528
-0.565
-10.183
1
19
A
2
B
16
4.500
A_C2:G16_B
2
-3.616
0.872
-0.710
-0.483
-4.266
A
3
B
15
9.632
A_G3:U15_B
3
8.419
7.047
-0.255
-3.332
22.388
10
11
A
4
B
14
-2.399
A_G4:A14_B
4
4.448
6.581
-0.104
-4.652
-22.142
10
11
A
5
B
13
-1.224
A_A5:G13_B
5
3.490
-6.597
0.042
-4.604
4.261
A
6
B
12
10.441
A_U6:G12_B
6
7.960
-7.010
-0.302
-3.339
10.477
1
19
A
7
B
11
4.334
A_G7:C11_B
7
-4.058
-0.948
-0.637
-0.508
16.054
1
19
A
8
B
10
-3.842
A_C8:G10_B
8
-0.687
0.148
-1.495
-0.553
3.275
31.960
A
A
1
2
-2.825
B
B
17
16
3.336
-1.548
0.565
-1.524
AA_G1C2:G16C17_BB
1
-5.127
9.353
31.520
-2.482
-1.971
3.076
61.664
A
A
2
3
15.247
B
B
16
15
3.221
15.481
-0.561
-0.081
AA_C2G3:U15G16_BB
2
4.308
-4.243
59.733
-0.789
0.745
2.899
21.299
A
A
3
4
1.070
B
B
15
14
3.251
0.389
-0.604
-0.626
AA_G3G4:A14U15_BB
3
6.577
-18.085
20.266
-1.847
4.238
3.072
-8.339
A
A
4
5
-67.247
B
B
14
13
3.796
7.688
0.024
-1.738
AA_G4A5:G13A14_BB
4
-0.184
-1.608
-3.228
-19.428
-0.583
2.792
21.811
A
A
5
6
4.318
B
B
13
12
3.182
1.612
0.859
-0.459
AA_A5U6:G12G13_BB
5
-5.929
15.879
20.938
-1.801
-4.436
3.045
61.569
A
A
6
7
14.124
B
B
12
11
3.176
14.336
0.485
-0.066
AA_U6G7:C11G12_BB
6
-4.997
4.924
59.847
-0.715
-0.701
3.313
32.524
A
A
7
8
-2.893
B
B
11
10
3.366
-1.613
-0.530
-1.579
AA_G7C8:G10C11_BB
7
5.262
-9.438
32.068
-2.529
1.892
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2007-02-20
1
1
2008-05-01
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Similar RNA sequence with GU pairs reversed
RCSB
Y
RCSB
2006-10-16
REL
REL
natural abundance 13C-1H and 15N-1H HSQC
structures with the least restraint violations,structures with the lowest energy
30
15
2D NOESY
DQF-COSY
5.18
278
K
structures validated by chemical back calculation using the program Nuchemics
simulated annealing and restrained molecular dynamics
1
fewest violations,lowest energy
1 mM Duplex, 80 mM NaCl, 0.5 mM Na2EDTA, 10 mM sodium phosphate, pH 5.5, 90%H2O, 10%D2O
90% H2O/10% D2O
Brunger et al.
structure solution
CNS
1.1
Delaglio et al.
processing
NMRPipe
Goddard et al.
data analysis
Sparky
3
Brunger et al.
refinement
CNS
1.1
600
Varian
INOVA
G
1
n
1
G
1
A
C
2
n
2
C
2
A
G
3
n
3
G
3
A
G
4
n
4
G
4
A
A
5
n
5
A
5
A
U
6
n
6
U
6
A
G
7
n
7
G
7
A
C
8
n
8
C
8
A
U
9
n
9
U
9
A
G
10
n
1
G
10
B
C
11
n
2
C
11
B
G
12
n
3
G
12
B
G
13
n
4
G
13
B
A
14
n
5
A
14
B
U
15
n
6
U
15
B
G
16
n
7
G
16
B
C
17
n
8
C
17
B
U
18
n
9
U
18
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
The NMR Structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2
1
N
N
1
N
N
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
B
C
17
B
N3
C
8
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
B
C
17
B
O2
C
8
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
B
C
17
B
N4
C
8
1_555
hydrog
TYPE_28_PAIR
A
G
1
A
N1
G
1
1_555
B
U
18
B
O2
U
9
1_555
hydrog
TYPE_28_PAIR
A
G
1
A
O6
G
1
1_555
B
U
18
B
N3
U
9
1_555
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
B
G
16
B
N1
G
7
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
B
G
16
B
O6
G
7
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
B
G
16
B
N2
G
7
1_555
hydrog
G-U MISPAIR
A
G
3
A
N2
G
3
1_555
B
U
15
B
O4
U
6
1_555
hydrog
G-G MISPAIR
A
G
3
A
N1
G
3
1_555
B
G
16
B
O6
G
7
1_555
hydrog
TYPE_11_PAIR
A
G
4
A
N2
G
4
1_555
B
A
14
B
N7
A
5
1_555
hydrog
TYPE_11_PAIR
A
G
4
A
N3
G
4
1_555
B
A
14
B
N6
A
5
1_555
hydrog
TYPE_11_PAIR
A
A
5
A
N6
A
5
1_555
B
G
13
B
N3
G
4
1_555
hydrog
TYPE_11_PAIR
A
A
5
A
N7
A
5
1_555
B
G
13
B
N2
G
4
1_555
hydrog
U-G MISPAIR
A
U
6
A
O4
U
6
1_555
B
G
12
B
N2
G
3
1_555
hydrog
WATSON-CRICK
A
G
7
A
N1
G
7
1_555
B
C
11
B
N3
C
2
1_555
hydrog
WATSON-CRICK
A
G
7
A
N2
G
7
1_555
B
C
11
B
O2
C
2
1_555
hydrog
WATSON-CRICK
A
G
7
A
O6
G
7
1_555
B
C
11
B
N4
C
2
1_555
hydrog
G-G MISPAIR
A
G
7
A
N1
G
7
1_555
B
G
12
B
N3
G
3
1_555
hydrog
WATSON-CRICK
A
C
8
A
N3
C
8
1_555
B
G
10
B
N1
G
1
1_555
hydrog
WATSON-CRICK
A
C
8
A
N4
C
8
1_555
B
G
10
B
O6
G
1
1_555
hydrog
WATSON-CRICK
A
C
8
A
O2
C
8
1_555
B
G
10
B
N2
G
1
1_555
hydrog
TYPE_28_PAIR
A
U
9
A
N3
U
9
1_555
B
G
10
B
O6
G
1
1_555
hydrog
TYPE_28_PAIR
A
U
9
A
O2
U
9
1_555
B
G
10
B
N1
G
1
1_555
RNA
RNA INTERNAL LOOPS, SHEARED GA PAIRS, SHEARED GU PAIRS, NON CANONICAL PAIRS, THERMODYNAMICS, RNA
2IRO
PDB
1
2IRO
1
9
2IRO
1
9
2IRO
A
1
1
9
10
18
2IRO
10
18
2IRO
B
1
1
9
1
P 1