0.016146
0.000000
0.000000
0.000000
0.014313
0.000000
0.000000
0.000000
0.013206
0.00000
0.00000
0.00000
Hecker, A.
Leulliot, N.
Graille, M.
Dorlet, P.
Quevillon-Cheruel, S.
Ulryck, N.
Van Tilbeurgh, H.
Forterre, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
61.933
69.868
75.723
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H17 N6 O12 P3
506.196
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
N
N
22
N
P
N
23
N
O
N
24
N
O
N
25
N
O
N
26
N
O
N
27
N
C
N
28
R
C
N
29
N
O
N
30
S
C
N
31
N
O
N
32
R
C
N
33
N
O
N
34
R
C
Y
35
N
N
Y
36
N
C
Y
37
N
N
Y
38
N
C
Y
39
N
C
N
40
N
N
Y
41
N
N
Y
42
N
C
Y
43
N
N
Y
44
N
C
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
N
N
63
S
C
N
64
N
C
N
65
N
O
N
66
N
C
N
67
N
C
N
68
N
C
N
69
N
N
N
70
N
C
N
71
N
N
N
72
N
N
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
R
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
S
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
Y
204
N
C
Y
205
N
N
Y
206
N
C
Y
207
N
C
Y
208
N
N
N
209
N
O
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
S
C
N
228
N
C
N
229
N
C
N
230
N
C
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
N
272
N
C
N
273
N
C
N
274
N
C
N
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
S
N
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
MG
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
C
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
N
358
N
O
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
R
C
N
372
N
O
N
373
N
C
N
374
N
O
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
N
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
N
422
N
O
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
N
N
436
S
C
N
437
N
C
N
438
N
O
N
439
N
C
N
440
N
C
N
441
N
C
N
442
N
O
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
sing
Y
50
N
doub
N
51
N
sing
Y
52
N
sing
Y
53
N
sing
Y
54
N
doub
N
55
N
sing
Y
56
N
doub
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
doub
N
61
N
sing
Y
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
Y
203
N
sing
Y
204
N
doub
Y
205
N
doub
N
206
N
sing
Y
207
N
sing
N
208
N
sing
Y
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
doub
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
Y
311
N
doub
Y
312
N
sing
Y
313
N
sing
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
doub
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
Y
380
N
doub
Y
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
Y
408
N
doub
Y
409
N
sing
Y
410
N
sing
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
doub
N
415
N
sing
Y
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
35
6042
10.1093/NAR/GKM554
17766251
An Archaeal Orthologue of the Universal Protein Kae1 is an Iron Metalloprotein which Exhibits Atypical DNA-Binding Properties and Apurinic-Endonuclease Activity in Vitro.
2007
10.2210/pdb2ivn/pdb
pdb_00002ivn
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.933
1.0
ID14-2
ESRF
0.933
SYNCHROTRON
ESRF BEAMLINE ID14-2
36244.828
O-SIALOGLYCOPROTEIN ENDOPEPTIDASE
3.4.24.57
1
man
polymer
92.094
GLYCEROL
1
syn
non-polymer
506.196
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
203
nat
water
UP1, GLOCOPROTEASE
no
no
MLALGIEGTAHTLGIGIVSEDKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQGPGL
GPALRVVATAARALAVKYRKPIVGVNHCIAHVEITKMFGVKDPVGLYVSGGNTQVLALEGGRYRVFGETLDIGIGNAIDV
FARELGLGFPGGPKVEKLAEKGEKYIELPYAVKGMDLSFSGLLTEAIRKYRSGKYRVEDLAYSFQETAFAALVEVTERAV
AHTEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYKAGISFRLEETIVKQKFRTDEV
EIVWHHHHHH
MLALGIEGTAHTLGIGIVSEDKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDVIAFSQGPGL
GPALRVVATAARALAVKYRKPIVGVNHCIAHVEITKMFGVKDPVGLYVSGGNTQVLALEGGRYRVFGETLDIGIGNAIDV
FARELGLGFPGGPKVEKLAEKGEKYIELPYAVKGMDLSFSGLLTEAIRKYRSGKYRVEDLAYSFQETAFAALVEVTERAV
AHTEKDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYKAGISFRLEETIVKQKFRTDEV
EIVWHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
29292
PYROCOCCUS ABYSSI
562
ESCHERICHIA COLI
ROSETTA (DE3) PLYSS
PET28A
1
2.14
41.95
NONE
5.6
25% PEG 4000, 0.3M KCL, 0.1M SODIUM CITRATE PH5.6
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
2007-07-31
1
1
2011-05-08
1
2
2011-07-13
1
3
2024-05-08
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
STRUCTURE OF UP1 PROTEIN
STRUCTURE OF UP1 PROTEIN
PDBE
Y
PDBE
2006-06-14
REL
REL
GOL
GLYCEROL
ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
MG
MAGNESIUM ION
HOH
water
GOL
1326
2
GOL
GOL
1326
A
ANP
1327
3
ANP
ANP
1327
A
MG
1328
4
MG
MG
1328
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2081
5
HOH
HOH
2081
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2083
5
HOH
HOH
2083
A
HOH
2084
5
HOH
HOH
2084
A
HOH
2085
5
HOH
HOH
2085
A
HOH
2086
5
HOH
HOH
2086
A
HOH
2087
5
HOH
HOH
2087
A
HOH
2088
5
HOH
HOH
2088
A
HOH
2089
5
HOH
HOH
2089
A
HOH
2090
5
HOH
HOH
2090
A
HOH
2091
5
HOH
HOH
2091
A
HOH
2092
5
HOH
HOH
2092
A
HOH
2093
5
HOH
HOH
2093
A
HOH
2094
5
HOH
HOH
2094
A
HOH
2095
5
HOH
HOH
2095
A
HOH
2096
5
HOH
HOH
2096
A
HOH
2097
5
HOH
HOH
2097
A
HOH
2098
5
HOH
HOH
2098
A
HOH
2099
5
HOH
HOH
2099
A
HOH
2100
5
HOH
HOH
2100
A
HOH
2101
5
HOH
HOH
2101
A
HOH
2102
5
HOH
HOH
2102
A
HOH
2103
5
HOH
HOH
2103
A
HOH
2104
5
HOH
HOH
2104
A
HOH
2105
5
HOH
HOH
2105
A
HOH
2106
5
HOH
HOH
2106
A
HOH
2107
5
HOH
HOH
2107
A
HOH
2108
5
HOH
HOH
2108
A
HOH
2109
5
HOH
HOH
2109
A
HOH
2110
5
HOH
HOH
2110
A
HOH
2111
5
HOH
HOH
2111
A
HOH
2112
5
HOH
HOH
2112
A
HOH
2113
5
HOH
HOH
2113
A
HOH
2114
5
HOH
HOH
2114
A
HOH
2115
5
HOH
HOH
2115
A
HOH
2116
5
HOH
HOH
2116
A
HOH
2117
5
HOH
HOH
2117
A
HOH
2118
5
HOH
HOH
2118
A
HOH
2119
5
HOH
HOH
2119
A
HOH
2120
5
HOH
HOH
2120
A
HOH
2121
5
HOH
HOH
2121
A
HOH
2122
5
HOH
HOH
2122
A
HOH
2123
5
HOH
HOH
2123
A
HOH
2124
5
HOH
HOH
2124
A
HOH
2125
5
HOH
HOH
2125
A
HOH
2126
5
HOH
HOH
2126
A
HOH
2127
5
HOH
HOH
2127
A
HOH
2128
5
HOH
HOH
2128
A
HOH
2129
5
HOH
HOH
2129
A
HOH
2130
5
HOH
HOH
2130
A
HOH
2131
5
HOH
HOH
2131
A
HOH
2132
5
HOH
HOH
2132
A
HOH
2133
5
HOH
HOH
2133
A
HOH
2134
5
HOH
HOH
2134
A
HOH
2135
5
HOH
HOH
2135
A
HOH
2136
5
HOH
HOH
2136
A
HOH
2137
5
HOH
HOH
2137
A
HOH
2138
5
HOH
HOH
2138
A
HOH
2139
5
HOH
HOH
2139
A
HOH
2140
5
HOH
HOH
2140
A
HOH
2141
5
HOH
HOH
2141
A
HOH
2142
5
HOH
HOH
2142
A
HOH
2143
5
HOH
HOH
2143
A
HOH
2144
5
HOH
HOH
2144
A
HOH
2145
5
HOH
HOH
2145
A
HOH
2146
5
HOH
HOH
2146
A
HOH
2147
5
HOH
HOH
2147
A
HOH
2148
5
HOH
HOH
2148
A
HOH
2149
5
HOH
HOH
2149
A
HOH
2150
5
HOH
HOH
2150
A
HOH
2151
5
HOH
HOH
2151
A
HOH
2152
5
HOH
HOH
2152
A
HOH
2153
5
HOH
HOH
2153
A
HOH
2154
5
HOH
HOH
2154
A
HOH
2155
5
HOH
HOH
2155
A
HOH
2156
5
HOH
HOH
2156
A
HOH
2157
5
HOH
HOH
2157
A
HOH
2158
5
HOH
HOH
2158
A
HOH
2159
5
HOH
HOH
2159
A
HOH
2160
5
HOH
HOH
2160
A
HOH
2161
5
HOH
HOH
2161
A
HOH
2162
5
HOH
HOH
2162
A
HOH
2163
5
HOH
HOH
2163
A
HOH
2164
5
HOH
HOH
2164
A
HOH
2165
5
HOH
HOH
2165
A
HOH
2166
5
HOH
HOH
2166
A
HOH
2167
5
HOH
HOH
2167
A
HOH
2168
5
HOH
HOH
2168
A
HOH
2169
5
HOH
HOH
2169
A
HOH
2170
5
HOH
HOH
2170
A
HOH
2171
5
HOH
HOH
2171
A
HOH
2172
5
HOH
HOH
2172
A
HOH
2173
5
HOH
HOH
2173
A
HOH
2174
5
HOH
HOH
2174
A
HOH
2175
5
HOH
HOH
2175
A
HOH
2176
5
HOH
HOH
2176
A
HOH
2177
5
HOH
HOH
2177
A
HOH
2178
5
HOH
HOH
2178
A
HOH
2179
5
HOH
HOH
2179
A
HOH
2180
5
HOH
HOH
2180
A
HOH
2181
5
HOH
HOH
2181
A
HOH
2182
5
HOH
HOH
2182
A
HOH
2183
5
HOH
HOH
2183
A
HOH
2184
5
HOH
HOH
2184
A
HOH
2185
5
HOH
HOH
2185
A
HOH
2186
5
HOH
HOH
2186
A
HOH
2187
5
HOH
HOH
2187
A
HOH
2188
5
HOH
HOH
2188
A
HOH
2189
5
HOH
HOH
2189
A
HOH
2190
5
HOH
HOH
2190
A
HOH
2191
5
HOH
HOH
2191
A
HOH
2192
5
HOH
HOH
2192
A
HOH
2193
5
HOH
HOH
2193
A
HOH
2194
5
HOH
HOH
2194
A
HOH
2195
5
HOH
HOH
2195
A
HOH
2196
5
HOH
HOH
2196
A
HOH
2197
5
HOH
HOH
2197
A
HOH
2198
5
HOH
HOH
2198
A
HOH
2199
5
HOH
HOH
2199
A
HOH
2200
5
HOH
HOH
2200
A
HOH
2201
5
HOH
HOH
2201
A
HOH
2202
5
HOH
HOH
2202
A
HOH
2203
5
HOH
HOH
2203
A
MET
1
n
1
MET
1
A
LEU
2
n
2
LEU
2
A
ALA
3
n
3
ALA
3
A
LEU
4
n
4
LEU
4
A
GLY
5
n
5
GLY
5
A
ILE
6
n
6
ILE
6
A
GLU
7
n
7
GLU
7
A
GLY
8
n
8
GLY
8
A
THR
9
n
9
THR
9
A
ALA
10
n
10
ALA
10
A
HIS
11
n
11
HIS
11
A
THR
12
n
12
THR
12
A
LEU
13
n
13
LEU
13
A
GLY
14
n
14
GLY
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
ILE
17
n
17
ILE
17
A
VAL
18
n
18
VAL
18
A
SER
19
n
19
SER
19
A
GLU
20
n
20
GLU
20
A
ASP
21
n
21
ASP
21
A
LYS
22
n
22
LYS
22
A
VAL
23
n
23
VAL
23
A
LEU
24
n
24
LEU
24
A
ALA
25
n
25
ALA
25
A
ASN
26
n
26
ASN
26
A
VAL
27
n
27
VAL
27
A
PHE
28
n
28
PHE
28
A
ASP
29
n
29
ASP
29
A
THR
30
n
30
THR
30
A
LEU
31
n
31
LEU
31
A
THR
32
n
32
THR
32
A
THR
33
n
33
THR
33
A
GLU
34
n
34
GLU
34
A
LYS
35
n
35
LYS
35
A
GLY
36
n
36
GLY
36
A
GLY
37
n
37
GLY
37
A
ILE
38
n
38
ILE
38
A
HIS
39
n
39
HIS
39
A
PRO
40
n
40
PRO
40
A
LYS
41
n
41
LYS
41
A
GLU
42
n
42
GLU
42
A
ALA
43
n
43
ALA
43
A
ALA
44
n
44
ALA
44
A
GLU
45
n
45
GLU
45
A
HIS
46
n
46
HIS
46
A
HIS
47
n
47
HIS
47
A
ALA
48
n
48
ALA
48
A
ARG
49
n
49
ARG
49
A
LEU
50
n
50
LEU
50
A
MET
51
n
51
MET
51
A
LYS
52
n
52
LYS
52
A
PRO
53
n
53
PRO
53
A
LEU
54
n
54
LEU
54
A
LEU
55
n
55
LEU
55
A
ARG
56
n
56
ARG
56
A
LYS
57
n
57
LYS
57
A
ALA
58
n
58
ALA
58
A
LEU
59
n
59
LEU
59
A
SER
60
n
60
SER
60
A
GLU
61
n
61
GLU
61
A
ALA
62
n
62
ALA
62
A
GLY
63
n
63
GLY
63
A
VAL
64
n
64
VAL
64
A
SER
65
n
65
SER
65
A
LEU
66
n
66
LEU
66
A
ASP
67
n
67
ASP
67
A
ASP
68
n
68
ASP
68
A
ILE
69
n
69
ILE
69
A
ASP
70
n
70
ASP
70
A
VAL
71
n
71
VAL
71
A
ILE
72
n
72
ILE
72
A
ALA
73
n
73
ALA
73
A
PHE
74
n
74
PHE
74
A
SER
75
n
75
SER
75
A
GLN
76
n
76
GLN
76
A
GLY
77
n
77
GLY
77
A
PRO
78
n
78
PRO
78
A
GLY
79
n
79
GLY
79
A
LEU
80
n
80
LEU
80
A
GLY
81
n
81
GLY
81
A
PRO
82
n
82
PRO
82
A
ALA
83
n
83
ALA
83
A
LEU
84
n
84
LEU
84
A
ARG
85
n
85
ARG
85
A
VAL
86
n
86
VAL
86
A
VAL
87
n
87
VAL
87
A
ALA
88
n
88
ALA
88
A
THR
89
n
89
THR
89
A
ALA
90
n
90
ALA
90
A
ALA
91
n
91
ALA
91
A
ARG
92
n
92
ARG
92
A
ALA
93
n
93
ALA
93
A
LEU
94
n
94
LEU
94
A
ALA
95
n
95
ALA
95
A
VAL
96
n
96
VAL
96
A
LYS
97
n
97
LYS
97
A
TYR
98
n
98
TYR
98
A
ARG
99
n
99
ARG
99
A
LYS
100
n
100
LYS
100
A
PRO
101
n
101
PRO
101
A
ILE
102
n
102
ILE
102
A
VAL
103
n
103
VAL
103
A
GLY
104
n
104
GLY
104
A
VAL
105
n
105
VAL
105
A
ASN
106
n
106
ASN
106
A
HIS
107
n
107
HIS
107
A
CYS
108
n
108
CYS
108
A
ILE
109
n
109
ILE
109
A
ALA
110
n
110
ALA
110
A
HIS
111
n
111
HIS
111
A
VAL
112
n
112
VAL
112
A
GLU
113
n
113
GLU
113
A
ILE
114
n
114
ILE
114
A
THR
115
n
115
THR
115
A
LYS
116
n
116
LYS
116
A
MET
117
n
117
MET
117
A
PHE
118
n
118
PHE
118
A
GLY
119
n
119
GLY
119
A
VAL
120
n
120
VAL
120
A
LYS
121
n
121
LYS
121
A
ASP
122
n
122
ASP
122
A
PRO
123
n
123
PRO
123
A
VAL
124
n
124
VAL
124
A
GLY
125
n
125
GLY
125
A
LEU
126
n
126
LEU
126
A
TYR
127
n
127
TYR
127
A
VAL
128
n
128
VAL
128
A
SER
129
n
129
SER
129
A
GLY
130
n
130
GLY
130
A
GLY
131
n
131
GLY
131
A
ASN
132
n
132
ASN
132
A
THR
133
n
133
THR
133
A
GLN
134
n
134
GLN
134
A
VAL
135
n
135
VAL
135
A
LEU
136
n
136
LEU
136
A
ALA
137
n
137
ALA
137
A
LEU
138
n
138
LEU
138
A
GLU
139
n
139
GLU
139
A
GLY
140
n
140
GLY
140
A
GLY
141
n
141
GLY
141
A
ARG
142
n
142
ARG
142
A
TYR
143
n
143
TYR
143
A
ARG
144
n
144
ARG
144
A
VAL
145
n
145
VAL
145
A
PHE
146
n
146
PHE
146
A
GLY
147
n
147
GLY
147
A
GLU
148
n
148
GLU
148
A
THR
149
n
149
THR
149
A
LEU
150
n
150
LEU
150
A
ASP
151
n
151
ASP
151
A
ILE
152
n
152
ILE
152
A
GLY
153
n
153
GLY
153
A
ILE
154
n
154
ILE
154
A
GLY
155
n
155
GLY
155
A
ASN
156
n
156
ASN
156
A
ALA
157
n
157
ALA
157
A
ILE
158
n
158
ILE
158
A
ASP
159
n
159
ASP
159
A
VAL
160
n
160
VAL
160
A
PHE
161
n
161
PHE
161
A
ALA
162
n
162
ALA
162
A
ARG
163
n
163
ARG
163
A
GLU
164
n
164
GLU
164
A
LEU
165
n
165
LEU
165
A
GLY
166
n
166
GLY
166
A
LEU
167
n
167
LEU
167
A
GLY
168
n
168
GLY
168
A
PHE
169
n
169
PHE
169
A
PRO
170
n
170
PRO
170
A
GLY
171
n
171
GLY
171
A
GLY
172
n
172
GLY
172
A
PRO
173
n
173
PRO
173
A
LYS
174
n
174
LYS
174
A
VAL
175
n
175
VAL
175
A
GLU
176
n
176
GLU
176
A
LYS
177
n
177
LYS
177
A
LEU
178
n
178
LEU
178
A
ALA
179
n
179
ALA
179
A
GLU
180
n
180
GLU
180
A
LYS
181
n
181
LYS
181
A
GLY
182
n
182
GLY
182
A
GLU
183
n
183
GLU
183
A
LYS
184
n
184
LYS
184
A
TYR
185
n
185
TYR
185
A
ILE
186
n
186
ILE
186
A
GLU
187
n
187
GLU
187
A
LEU
188
n
188
LEU
188
A
PRO
189
n
189
PRO
189
A
TYR
190
n
190
TYR
190
A
ALA
191
n
191
ALA
191
A
VAL
192
n
192
VAL
192
A
LYS
193
n
193
LYS
193
A
GLY
194
n
194
GLY
194
A
MET
195
n
195
MET
195
A
ASP
196
n
196
ASP
196
A
LEU
197
n
197
LEU
197
A
SER
198
n
198
SER
198
A
PHE
199
n
199
PHE
199
A
SER
200
n
200
SER
200
A
GLY
201
n
201
GLY
201
A
LEU
202
n
202
LEU
202
A
LEU
203
n
203
LEU
203
A
THR
204
n
204
THR
204
A
GLU
205
n
205
GLU
205
A
ALA
206
n
206
ALA
206
A
ILE
207
n
207
ILE
207
A
ARG
208
n
208
ARG
208
A
LYS
209
n
209
LYS
209
A
TYR
210
n
210
TYR
210
A
ARG
211
n
211
ARG
211
A
SER
212
n
212
SER
212
A
GLY
213
n
213
GLY
213
A
LYS
214
n
214
LYS
214
A
TYR
215
n
215
TYR
215
A
ARG
216
n
216
ARG
216
A
VAL
217
n
217
VAL
217
A
GLU
218
n
218
GLU
218
A
ASP
219
n
219
ASP
219
A
LEU
220
n
220
LEU
220
A
ALA
221
n
221
ALA
221
A
TYR
222
n
222
TYR
222
A
SER
223
n
223
SER
223
A
PHE
224
n
224
PHE
224
A
GLN
225
n
225
GLN
225
A
GLU
226
n
226
GLU
226
A
THR
227
n
227
THR
227
A
ALA
228
n
228
ALA
228
A
PHE
229
n
229
PHE
229
A
ALA
230
n
230
ALA
230
A
ALA
231
n
231
ALA
231
A
LEU
232
n
232
LEU
232
A
VAL
233
n
233
VAL
233
A
GLU
234
n
234
GLU
234
A
VAL
235
n
235
VAL
235
A
THR
236
n
236
THR
236
A
GLU
237
n
237
GLU
237
A
ARG
238
n
238
ARG
238
A
ALA
239
n
239
ALA
239
A
VAL
240
n
240
VAL
240
A
ALA
241
n
241
ALA
241
A
HIS
242
n
242
HIS
242
A
THR
243
n
243
THR
243
A
GLU
244
n
244
GLU
244
A
LYS
245
n
245
LYS
245
A
ASP
246
n
246
ASP
246
A
GLU
247
n
247
GLU
247
A
VAL
248
n
248
VAL
248
A
VAL
249
n
249
VAL
249
A
LEU
250
n
250
LEU
250
A
VAL
251
n
251
VAL
251
A
GLY
252
n
252
GLY
252
A
GLY
253
n
253
GLY
253
A
VAL
254
n
254
VAL
254
A
ALA
255
n
255
ALA
255
A
ALA
256
n
256
ALA
256
A
ASN
257
n
257
ASN
257
A
ASN
258
n
258
ASN
258
A
ARG
259
n
259
ARG
259
A
LEU
260
n
260
LEU
260
A
ARG
261
n
261
ARG
261
A
GLU
262
n
262
GLU
262
A
MET
263
n
263
MET
263
A
LEU
264
n
264
LEU
264
A
ARG
265
n
265
ARG
265
A
ILE
266
n
266
ILE
266
A
MET
267
n
267
MET
267
A
THR
268
n
268
THR
268
A
GLU
269
n
269
GLU
269
A
ASP
270
n
270
ASP
270
A
ARG
271
n
271
ARG
271
A
GLY
272
n
272
GLY
272
A
ILE
273
n
273
ILE
273
A
LYS
274
n
274
LYS
274
A
PHE
275
n
275
PHE
275
A
PHE
276
n
276
PHE
276
A
VAL
277
n
277
VAL
277
A
PRO
278
n
278
PRO
278
A
PRO
279
n
279
PRO
279
A
TYR
280
n
280
TYR
280
A
ASP
281
n
281
ASP
281
A
LEU
282
n
282
LEU
282
A
CYS
283
n
283
CYS
283
A
ARG
284
n
284
ARG
284
A
ASP
285
n
285
ASP
285
A
ASN
286
n
286
ASN
286
A
GLY
287
n
287
GLY
287
A
ALA
288
n
288
ALA
288
A
MET
289
n
289
MET
289
A
ILE
290
n
290
ILE
290
A
ALA
291
n
291
ALA
291
A
TYR
292
n
292
TYR
292
A
THR
293
n
293
THR
293
A
GLY
294
n
294
GLY
294
A
LEU
295
n
295
LEU
295
A
ARG
296
n
296
ARG
296
A
MET
297
n
297
MET
297
A
TYR
298
n
298
TYR
298
A
LYS
299
n
299
LYS
299
A
ALA
300
n
300
ALA
300
A
GLY
301
n
301
GLY
301
A
ILE
302
n
302
ILE
302
A
SER
303
n
303
SER
303
A
PHE
304
n
304
PHE
304
A
ARG
305
n
305
ARG
305
A
LEU
306
n
306
LEU
306
A
GLU
307
n
307
GLU
307
A
GLU
308
n
308
GLU
308
A
THR
309
n
309
THR
309
A
ILE
310
n
310
ILE
310
A
VAL
311
n
311
VAL
311
A
LYS
312
n
312
LYS
312
A
GLN
313
n
313
GLN
313
A
LYS
314
n
314
LYS
314
A
PHE
315
n
315
PHE
315
A
ARG
316
n
316
ARG
316
A
THR
317
n
317
THR
317
A
ASP
318
n
318
ASP
318
A
GLU
319
n
319
GLU
319
A
VAL
320
n
320
VAL
320
A
GLU
321
n
321
GLU
321
A
ILE
322
n
322
ILE
322
A
VAL
323
n
323
VAL
323
A
TRP
324
n
324
TRP
324
A
HIS
325
n
325
HIS
325
A
n
326
326
A
n
327
327
A
n
328
328
A
n
329
329
A
n
330
330
A
author_and_software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASP
29
A
N
ASP
29
A
O
LEU
13
A
O
LEU
13
A
N
VAL
18
A
N
VAL
18
A
O
ALA
3
A
O
ALA
3
A
N
LEU
4
A
N
LEU
4
A
O
VAL
71
A
O
VAL
71
A
N
PHE
74
A
N
PHE
74
A
O
VAL
103
A
O
VAL
103
A
N
PHE
146
A
N
PHE
146
A
O
VAL
135
A
O
VAL
135
A
N
LEU
136
A
N
LEU
136
A
O
GLY
125
A
O
GLY
125
A
N
VAL
124
A
N
VAL
124
A
O
GLU
247
A
O
GLU
247
A
N
VAL
248
A
N
VAL
248
A
O
LYS
274
A
O
LYS
274
A
N
LYS
193
A
N
LYS
193
A
O
ASP
196
A
O
ASP
196
1
A
HIS
326
A
HIS
326
1
Y
1
A
HIS
327
A
HIS
327
1
Y
1
A
HIS
328
A
HIS
328
1
Y
1
A
HIS
329
A
HIS
329
1
Y
1
A
HIS
330
A
HIS
330
1
Y
1
A
ALA
10
-136.32
-133.64
1
A
SER
19
-105.34
-169.44
1
A
ASP
122
-157.41
76.12
1
A
ASP
151
-131.40
-82.55
21.33
0.79000
0.00000
0.00000
-0.51000
0.00000
-0.28000
0.952
0.952
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.224
0.212
0.213
1.65
20.00
1987
37910
5.000
99.2
2.029
0.070
RANDOM
1
THROUGHOUT
MAD
0.114
0.102
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
1.65
20.00
203
2740
38
0
2499
0.006
0.022
2581
0.987
1.993
3489
4.734
5.000
324
35.707
23.113
106
11.397
15.000
449
19.749
15.000
20
0.057
0.200
395
0.002
0.020
1900
0.165
0.200
1237
0.294
0.200
1801
0.078
0.200
174
0.101
0.200
33
0.076
0.200
12
0.308
1.500
1662
0.518
2.000
2563
0.860
3.000
1045
1.411
4.500
926
0.3540
0.3070
1.69
157
2767
20
1.65
20.00
2IVN
41853
2.0
0.06
1
25.10
4.1
99.2
0.51
1.65
1.69
2.80
1
2.84
100.0
refinement
REFMAC
5.2.0005
data reduction
MOSFLM
data scaling
SCALA
Structure of UP1 protein
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
HIS
39
A
HIS
39
HELX_P
A
GLY
63
A
GLY
63
1
1
25
A
LEU
80
A
LEU
80
HELX_P
A
TYR
98
A
TYR
98
1
2
19
A
HIS
107
A
HIS
107
HELX_P
A
ILE
114
A
ILE
114
1
3
8
A
THR
115
A
THR
115
HELX_P
A
GLY
119
A
GLY
119
5
4
5
A
GLY
153
A
GLY
153
HELX_P
A
GLY
166
A
GLY
166
1
5
14
A
PRO
170
A
PRO
170
HELX_P
A
LYS
181
A
LYS
181
1
6
12
A
PHE
199
A
PHE
199
HELX_P
A
GLY
213
A
GLY
213
1
7
15
A
ARG
216
A
ARG
216
HELX_P
A
GLU
244
A
GLU
244
1
8
29
A
GLY
252
A
GLY
252
HELX_P
A
ALA
256
A
ALA
256
5
9
5
A
ASN
257
A
ASN
257
HELX_P
A
GLY
272
A
GLY
272
1
10
16
A
PRO
279
A
PRO
279
HELX_P
A
ARG
284
A
ARG
284
1
11
6
A
ASN
286
A
ASN
286
HELX_P
A
ALA
300
A
ALA
300
1
12
15
A
ARG
305
A
ARG
305
HELX_P
A
ILE
310
A
ILE
310
5
13
6
A
ARG
316
A
ARG
316
HELX_P
A
VAL
320
A
VAL
320
5
14
5
metalc
2.214
A
ANP
1327
C
O2A
ANP
1_555
A
MG
1328
D
MG
MG
1_555
HYDROLASE
UP1 KEOPS COMPLEX, FE/ZN DEPENDENT NUCLEOTIDE PHOSPHATASE, METALLOPROTEASE, HYPOTHETICAL PROTEIN, ZINC, PROTEASE, HYDROLASE, METAL-BINDING
A
GLY
77
A
GLY
77
1
A
PRO
78
A
PRO
78
-4.65
A
PHE
169
A
PHE
169
1
A
PRO
170
A
PRO
170
-2.12
GCP_PYRAB
UNP
1
Q9UXT7
2IVN
PDB
1
2IVN
1
324
2IVN
1
324
Q9UXT7
A
1
1
324
325
330
2IVN
325
330
2IVN
A
2
325
330
5
5
2
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
A
VAL
23
A
VAL
23
A
THR
30
A
THR
30
A
THR
12
A
THR
12
A
VAL
18
A
VAL
18
A
ALA
3
A
ALA
3
A
GLU
7
A
GLU
7
A
VAL
71
A
VAL
71
A
GLY
77
A
GLY
77
A
ILE
102
A
ILE
102
A
ASN
106
A
ASN
106
A
ARG
142
A
ARG
142
A
GLU
148
A
GLU
148
A
THR
133
A
THR
133
A
GLU
139
A
GLU
139
A
VAL
124
A
VAL
124
A
VAL
128
A
VAL
128
A
GLU
247
A
GLU
247
A
VAL
251
A
VAL
251
A
LYS
274
A
LYS
274
A
PHE
276
A
PHE
276
A
VAL
192
A
VAL
192
A
LYS
193
A
LYS
193
A
ASP
196
A
ASP
196
A
LEU
197
A
LEU
197
BINDING SITE FOR RESIDUE GOL A1326
Software
8
BINDING SITE FOR RESIDUE ANP A1327
Software
23
BINDING SITE FOR RESIDUE MG A1328
Software
6
A
VAL
145
A
VAL
145
8
1_555
A
PHE
146
A
PHE
146
8
1_555
A
GLU
148
A
GLU
148
8
1_555
A
LYS
177
A
LYS
177
8
1_555
A
LYS
181
A
LYS
181
8
1_555
A
ASP
196
A
ASP
196
8
1_555
A
HOH
2112
E
HOH
8
1_555
A
HOH
2201
E
HOH
8
1_555
A
THR
9
A
THR
9
23
1_555
A
HIS
107
A
HIS
107
23
1_555
A
TYR
127
A
TYR
127
23
1_555
A
SER
129
A
SER
129
23
1_555
A
GLY
130
A
GLY
130
23
1_555
A
GLY
131
A
GLY
131
23
1_555
A
ASN
132
A
ASN
132
23
1_555
A
GLY
155
A
GLY
155
23
1_555
A
ASP
159
A
ASP
159
23
1_555
A
GLY
172
A
GLY
172
23
1_555
A
PRO
173
A
PRO
173
23
1_555
A
GLU
176
A
GLU
176
23
1_555
A
GLY
253
A
GLY
253
23
1_555
A
VAL
254
A
VAL
254
23
1_555
A
ASN
257
A
ASN
257
23
1_555
A
TYR
280
A
TYR
280
23
1_555
A
ARG
284
A
ARG
284
23
1_555
A
ASP
285
A
ASP
285
23
1_555
A
MG
1328
D
MG
23
1_555
A
HOH
2171
E
HOH
23
1_555
A
HOH
2175
E
HOH
23
1_555
A
HOH
2202
E
HOH
23
1_555
A
HOH
2203
E
HOH
23
1_555
A
HIS
111
A
HIS
111
6
1_555
A
SER
129
A
SER
129
6
1_555
A
GLY
252
A
GLY
252
6
1_555
A
GLY
253
A
GLY
253
6
1_555
A
ASP
285
A
ASP
285
6
1_555
A
ANP
1327
C
ANP
6
1_555
19
P 21 21 21