0.010585 0.006111 0.000000 0.000000 0.012223 0.000000 0.000000 0.000000 0.006364 0.00000 0.00000 0.00000 Gmelin, W. Zeth, K. Efremov, R. Heberle, J. Tittor, J. Oesterhelt, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 94.473 94.473 157.137 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C14 H28 O6 292.369 n octyl beta-D-glucopyranoside Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside D-saccharide Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C16 H32 O2 256.424 PALMITIC ACID non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C20 H28 O 284.436 RETINAL non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 R C N 75 N O N 76 R C N 77 N O N 78 S C N 79 N O N 80 S C N 81 N O N 82 R C N 83 N O N 84 N C N 85 N O N 86 N C N 87 N C N 88 N C N 89 N C N 90 N C N 91 N C N 92 N C N 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N CL N 123 N N N 124 R C N 125 N C N 126 N O N 127 N C N 128 N S N 129 N O N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C N 142 N C N 143 N C N 144 N O N 145 N N N 146 N O N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N N N 158 S C N 159 N C N 160 N O N 161 N C N 162 N C N 163 N C N 164 N O N 165 N O N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 N C N 178 N C N 179 N O N 180 N O N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 S C N 188 N C N 189 N O N 190 N C Y 191 N C Y 192 N N Y 193 N C Y 194 N C Y 195 N N N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N O N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 S C N 215 N C N 216 N C N 217 N C N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N C N 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C N 284 N C N 285 N S N 286 N C N 287 N O N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N N N 300 S C N 301 N C N 302 N O N 303 N C Y 304 N C Y 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N C N 323 N O N 324 N O N 325 N C N 326 N C N 327 N C N 328 N C N 329 N C N 330 N C N 331 N C N 332 N C N 333 N C N 334 N C N 335 N C N 336 N C N 337 N C N 338 N C N 339 N C N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N C N 390 N C N 391 N C N 392 N C N 393 N C N 394 N C N 395 N C N 396 N C N 397 N C N 398 N C N 399 N C N 400 N C N 401 N C N 402 N C N 403 N C N 404 N O N 405 N C N 406 N C N 407 N C N 408 N C N 409 N C N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N N N 439 S C N 440 N C N 441 N O N 442 N C N 443 N O N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N N N 453 S C N 454 N C N 455 N O N 456 R C N 457 N O N 458 N C N 459 N O N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N N N 470 S C N 471 N C N 472 N O N 473 N C Y 474 N C Y 475 N C Y 476 N C Y 477 N N Y 478 N C Y 479 N C Y 480 N C Y 481 N C Y 482 N C N 483 N O N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N N N 497 S C N 498 N C N 499 N O N 500 N C Y 501 N C Y 502 N C Y 503 N C Y 504 N C Y 505 N C Y 506 N C N 507 N O N 508 N O N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N N N 521 S C N 522 N C N 523 N O N 524 N C N 525 N C N 526 N C N 527 N O N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing Y 188 N sing Y 189 N doub Y 190 N doub N 191 N sing Y 192 N sing N 193 N sing Y 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N doub N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing Y 296 N doub Y 297 N sing Y 298 N sing N 299 N sing Y 300 N doub N 301 N sing Y 302 N doub N 303 N sing Y 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 E doub N 391 N sing N 392 N sing N 393 N sing N 394 E doub N 395 N sing N 396 N sing N 397 N sing N 398 E doub N 399 N sing N 400 N sing N 401 N sing N 402 E doub N 403 N sing N 404 N sing N 405 N sing N 406 N doub N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N doub N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N doub N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N doub N 459 N sing N 460 N sing N 461 N sing N 462 N sing Y 463 N doub Y 464 N sing Y 465 N sing N 466 N sing Y 467 N doub Y 468 N sing Y 469 N sing N 470 N sing Y 471 N sing Y 472 N doub N 473 N sing Y 474 N doub N 475 N sing Y 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N doub N 487 N sing N 488 N sing N 489 N sing N 490 N sing Y 491 N doub Y 492 N sing Y 493 N sing N 494 N sing Y 495 N doub N 496 N sing Y 497 N doub N 498 N sing Y 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N doub N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing US Photochem. Photobiol. PHCBAP 0568 0031-8655 83 369 377 10.1562/2006-06-23-RA-947 17117890 The crystal structure of the L1 intermediate of halorhodopsin at 1.9 angstroms resolution. 2007 10.2210/pdb2jaf/pdb pdb_00002jaf 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD ADSC CCD SINGLE WAVELENGTH M x-ray 1 0.9393 1.0 ID14-2 ESRF 0.9393 SYNCHROTRON ESRF BEAMLINE ID14-2 28856.814 Halorhodopsin T203V 1 man polymer 35.453 CHLORIDE ION 2 syn non-polymer 256.424 PALMITIC ACID 2 syn non-polymer 292.369 octyl beta-D-glucopyranoside 1 man non-polymer 284.436 RETINAL 1 syn non-polymer 18.015 water 67 nat water HR no no MSITSVPGVVDAGVLGAQSAAAVRENALLSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGL LSGLTVGMIEMPAGHALAGEMVRSQWGRYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLF RWAFYAISCAFFVVVLSALVTDWAASASSAGTAEIFDTLRVLVVVLWLGYPIVWAVGVEGLALVQSVGATSWAYSVLDVF AKYVFAFILLRWVANNERTVAVAGQTLGTMSSDD MSITSVPGVVDAGVLGAQSAAAVRENALLSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGL LSGLTVGMIEMPAGHALAGEMVRSQWGRYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLF RWAFYAISCAFFVVVLSALVTDWAASASSAGTAEIFDTLRVLVVVLWLGYPIVWAVGVEGLALVQSVGATSWAYSVLDVF AKYVFAFILLRWVANNERTVAVAGQTLGTMSSDD A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 DSM 671 274 hop, OE_1299R 478009 Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) 478009 Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) Biological sequence 2.34 47.40 LIPIDIC CUBIC PHASE CRYSTALLIZED IN A CUBIC LIPID PHASE MADE OF 58-62 W/V % 1-MONOOLEIN, 3.3 M KCL, 3.5 MG/ML HR AND 25 MM TRIS/HCL, PH 7, R.T. citation entity entity_src_gen entity_src_nat struct_ref struct_ref_seq struct_ref_seq_dif exptl_crystal_grow struct_conn chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Database references Derived calculations Non-polymer description Other Refinement description Version format compliance Data collection Database references Source and taxonomy Structure summary Data collection Derived calculations Experimental preparation Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2006-12-14 1 1 2011-12-28 1 2 2018-11-21 1 3 2019-05-22 1 4 2020-07-29 1 5 2023-12-13 _citation.journal_abbrev _citation.page_last _citation.title _entity.pdbx_description _entity.pdbx_mutation _entity.src_method _struct_ref.db_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_seq_one_letter_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq_dif.pdbx_seq_db_accession_code _exptl_crystal_grow.method _struct_conn.pdbx_leaving_atom_flag _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession b-octylglucoside HALORHODOPSIN, A LIGHT-DRIVEN CHLORIDE PUMP GROUND STATE AND L1 INTERMEDIATE OF HALORHODOPSIN PDBE Y PDBE 2006-11-28 REL CL CHLORIDE ION PLM PALMITIC ACID BOG octyl beta-D-glucopyranoside RET RETINAL HOH water ENGINEERED RESIDUE IN CHAIN A, THR 203 TO VAL ENGINEERED RESIDUE IN CHAIN A, VAL 229 TO ALA 1E12 PDB ENTRY 1E12 PDB experimental model CL 501 2 CL CL 501 A CL 502 2 CL CL 502 A PLM 700 3 PLM PLM 700 A PLM 701 3 PLM PLM 701 A BOG 801 4 BOG BOG 801 A RET 900 5 RET RET 900 A HOH 2001 6 HOH HOH 2001 A HOH 2002 6 HOH HOH 2002 A HOH 2003 6 HOH HOH 2003 A HOH 2004 6 HOH HOH 2004 A HOH 2005 6 HOH HOH 2005 A HOH 2006 6 HOH HOH 2006 A HOH 2007 6 HOH HOH 2007 A HOH 2008 6 HOH HOH 2008 A HOH 2009 6 HOH HOH 2009 A HOH 2010 6 HOH HOH 2010 A HOH 2011 6 HOH HOH 2011 A HOH 2012 6 HOH HOH 2012 A HOH 2013 6 HOH HOH 2013 A HOH 2014 6 HOH HOH 2014 A HOH 2015 6 HOH HOH 2015 A HOH 2016 6 HOH HOH 2016 A HOH 2017 6 HOH HOH 2017 A HOH 2018 6 HOH HOH 2018 A HOH 2019 6 HOH HOH 2019 A HOH 2020 6 HOH HOH 2020 A HOH 2021 6 HOH HOH 2021 A HOH 2022 6 HOH HOH 2022 A HOH 2023 6 HOH HOH 2023 A HOH 2024 6 HOH HOH 2024 A HOH 2025 6 HOH HOH 2025 A HOH 2026 6 HOH HOH 2026 A HOH 2027 6 HOH HOH 2027 A HOH 2028 6 HOH HOH 2028 A HOH 2029 6 HOH HOH 2029 A HOH 2030 6 HOH HOH 2030 A HOH 2031 6 HOH HOH 2031 A HOH 2032 6 HOH HOH 2032 A HOH 2033 6 HOH HOH 2033 A HOH 2034 6 HOH HOH 2034 A HOH 2035 6 HOH HOH 2035 A HOH 2036 6 HOH HOH 2036 A HOH 2037 6 HOH HOH 2037 A HOH 2038 6 HOH HOH 2038 A HOH 2039 6 HOH HOH 2039 A HOH 2040 6 HOH HOH 2040 A HOH 2041 6 HOH HOH 2041 A HOH 2042 6 HOH HOH 2042 A HOH 2043 6 HOH HOH 2043 A HOH 2044 6 HOH HOH 2044 A HOH 2045 6 HOH HOH 2045 A HOH 2046 6 HOH HOH 2046 A HOH 2047 6 HOH HOH 2047 A HOH 2048 6 HOH HOH 2048 A HOH 2049 6 HOH HOH 2049 A HOH 2050 6 HOH HOH 2050 A HOH 2051 6 HOH HOH 2051 A HOH 2052 6 HOH HOH 2052 A HOH 2053 6 HOH HOH 2053 A HOH 2054 6 HOH HOH 2054 A HOH 2055 6 HOH HOH 2055 A HOH 2056 6 HOH HOH 2056 A HOH 2057 6 HOH HOH 2057 A HOH 2058 6 HOH HOH 2058 A HOH 2059 6 HOH HOH 2059 A HOH 2060 6 HOH HOH 2060 A HOH 2061 6 HOH HOH 2061 A HOH 2062 6 HOH HOH 2062 A HOH 2063 6 HOH HOH 2063 A HOH 2064 6 HOH HOH 2064 A HOH 2065 6 HOH HOH 2065 A HOH 2066 6 HOH HOH 2066 A HOH 2067 6 HOH HOH 2067 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A n 11 11 A n 12 12 A n 13 13 A n 14 14 A n 15 15 A n 16 16 A n 17 17 A n 18 18 A n 19 19 A n 20 20 A n 21 21 A ALA 22 n 22 ALA 22 A VAL 23 n 23 VAL 23 A ARG 24 n 24 ARG 24 A GLU 25 n 25 GLU 25 A ASN 26 n 26 ASN 26 A ALA 27 n 27 ALA 27 A LEU 28 n 28 LEU 28 A LEU 29 n 29 LEU 29 A SER 30 n 30 SER 30 A SER 31 n 31 SER 31 A SER 32 n 32 SER 32 A LEU 33 n 33 LEU 33 A TRP 34 n 34 TRP 34 A VAL 35 n 35 VAL 35 A ASN 36 n 36 ASN 36 A VAL 37 n 37 VAL 37 A ALA 38 n 38 ALA 38 A LEU 39 n 39 LEU 39 A ALA 40 n 40 ALA 40 A GLY 41 n 41 GLY 41 A ILE 42 n 42 ILE 42 A ALA 43 n 43 ALA 43 A ILE 44 n 44 ILE 44 A LEU 45 n 45 LEU 45 A VAL 46 n 46 VAL 46 A PHE 47 n 47 PHE 47 A VAL 48 n 48 VAL 48 A TYR 49 n 49 TYR 49 A MET 50 n 50 MET 50 A GLY 51 n 51 GLY 51 A ARG 52 n 52 ARG 52 A THR 53 n 53 THR 53 A ILE 54 n 54 ILE 54 A ARG 55 n 55 ARG 55 A PRO 56 n 56 PRO 56 A GLY 57 n 57 GLY 57 A ARG 58 n 58 ARG 58 A PRO 59 n 59 PRO 59 A ARG 60 n 60 ARG 60 A LEU 61 n 61 LEU 61 A ILE 62 n 62 ILE 62 A TRP 63 n 63 TRP 63 A GLY 64 n 64 GLY 64 A ALA 65 n 65 ALA 65 A THR 66 n 66 THR 66 A LEU 67 n 67 LEU 67 A MET 68 n 68 MET 68 A ILE 69 n 69 ILE 69 A PRO 70 n 70 PRO 70 A LEU 71 n 71 LEU 71 A VAL 72 n 72 VAL 72 A SER 73 n 73 SER 73 A ILE 74 n 74 ILE 74 A SER 75 n 75 SER 75 A SER 76 n 76 SER 76 A TYR 77 n 77 TYR 77 A LEU 78 n 78 LEU 78 A GLY 79 n 79 GLY 79 A LEU 80 n 80 LEU 80 A LEU 81 n 81 LEU 81 A SER 82 n 82 SER 82 A GLY 83 n 83 GLY 83 A LEU 84 n 84 LEU 84 A THR 85 n 85 THR 85 A VAL 86 n 86 VAL 86 A GLY 87 n 87 GLY 87 A MET 88 n 88 MET 88 A ILE 89 n 89 ILE 89 A GLU 90 n 90 GLU 90 A MET 91 n 91 MET 91 A PRO 92 n 92 PRO 92 A ALA 93 n 93 ALA 93 A GLY 94 n 94 GLY 94 A HIS 95 n 95 HIS 95 A ALA 96 n 96 ALA 96 A LEU 97 n 97 LEU 97 A ALA 98 n 98 ALA 98 A GLY 99 n 99 GLY 99 A GLU 100 n 100 GLU 100 A MET 101 n 101 MET 101 A VAL 102 n 102 VAL 102 A ARG 103 n 103 ARG 103 A SER 104 n 104 SER 104 A GLN 105 n 105 GLN 105 A TRP 106 n 106 TRP 106 A GLY 107 n 107 GLY 107 A ARG 108 n 108 ARG 108 A TYR 109 n 109 TYR 109 A LEU 110 n 110 LEU 110 A THR 111 n 111 THR 111 A TRP 112 n 112 TRP 112 A ALA 113 n 113 ALA 113 A LEU 114 n 114 LEU 114 A SER 115 n 115 SER 115 A THR 116 n 116 THR 116 A PRO 117 n 117 PRO 117 A MET 118 n 118 MET 118 A ILE 119 n 119 ILE 119 A LEU 120 n 120 LEU 120 A LEU 121 n 121 LEU 121 A ALA 122 n 122 ALA 122 A LEU 123 n 123 LEU 123 A GLY 124 n 124 GLY 124 A LEU 125 n 125 LEU 125 A LEU 126 n 126 LEU 126 A ALA 127 n 127 ALA 127 A ASP 128 n 128 ASP 128 A VAL 129 n 129 VAL 129 A ASP 130 n 130 ASP 130 A LEU 131 n 131 LEU 131 A GLY 132 n 132 GLY 132 A SER 133 n 133 SER 133 A LEU 134 n 134 LEU 134 A PHE 135 n 135 PHE 135 A THR 136 n 136 THR 136 A VAL 137 n 137 VAL 137 A ILE 138 n 138 ILE 138 A ALA 139 n 139 ALA 139 A ALA 140 n 140 ALA 140 A ASP 141 n 141 ASP 141 A ILE 142 n 142 ILE 142 A GLY 143 n 143 GLY 143 A MET 144 n 144 MET 144 A CYS 145 n 145 CYS 145 A VAL 146 n 146 VAL 146 A THR 147 n 147 THR 147 A GLY 148 n 148 GLY 148 A LEU 149 n 149 LEU 149 A ALA 150 n 150 ALA 150 A ALA 151 n 151 ALA 151 A ALA 152 n 152 ALA 152 A MET 153 n 153 MET 153 A THR 154 n 154 THR 154 A THR 155 n 155 THR 155 A SER 156 n 156 SER 156 A ALA 157 n 157 ALA 157 A LEU 158 n 158 LEU 158 A LEU 159 n 159 LEU 159 A PHE 160 n 160 PHE 160 A ARG 161 n 161 ARG 161 A TRP 162 n 162 TRP 162 A ALA 163 n 163 ALA 163 A PHE 164 n 164 PHE 164 A TYR 165 n 165 TYR 165 A ALA 166 n 166 ALA 166 A ILE 167 n 167 ILE 167 A SER 168 n 168 SER 168 A CYS 169 n 169 CYS 169 A ALA 170 n 170 ALA 170 A PHE 171 n 171 PHE 171 A PHE 172 n 172 PHE 172 A VAL 173 n 173 VAL 173 A VAL 174 n 174 VAL 174 A VAL 175 n 175 VAL 175 A LEU 176 n 176 LEU 176 A SER 177 n 177 SER 177 A ALA 178 n 178 ALA 178 A LEU 179 n 179 LEU 179 A VAL 180 n 180 VAL 180 A THR 181 n 181 THR 181 A ASP 182 n 182 ASP 182 A TRP 183 n 183 TRP 183 A ALA 184 n 184 ALA 184 A ALA 185 n 185 ALA 185 A SER 186 n 186 SER 186 A ALA 187 n 187 ALA 187 A SER 188 n 188 SER 188 A SER 189 n 189 SER 189 A ALA 190 n 190 ALA 190 A GLY 191 n 191 GLY 191 A THR 192 n 192 THR 192 A ALA 193 n 193 ALA 193 A GLU 194 n 194 GLU 194 A ILE 195 n 195 ILE 195 A PHE 196 n 196 PHE 196 A ASP 197 n 197 ASP 197 A THR 198 n 198 THR 198 A LEU 199 n 199 LEU 199 A ARG 200 n 200 ARG 200 A VAL 201 n 201 VAL 201 A LEU 202 n 202 LEU 202 A VAL 203 n 203 VAL 203 A VAL 204 n 204 VAL 204 A VAL 205 n 205 VAL 205 A LEU 206 n 206 LEU 206 A TRP 207 n 207 TRP 207 A LEU 208 n 208 LEU 208 A GLY 209 n 209 GLY 209 A TYR 210 n 210 TYR 210 A PRO 211 n 211 PRO 211 A ILE 212 n 212 ILE 212 A VAL 213 n 213 VAL 213 A TRP 214 n 214 TRP 214 A ALA 215 n 215 ALA 215 A VAL 216 n 216 VAL 216 A GLY 217 n 217 GLY 217 A VAL 218 n 218 VAL 218 A GLU 219 n 219 GLU 219 A GLY 220 n 220 GLY 220 A LEU 221 n 221 LEU 221 A ALA 222 n 222 ALA 222 A LEU 223 n 223 LEU 223 A VAL 224 n 224 VAL 224 A GLN 225 n 225 GLN 225 A SER 226 n 226 SER 226 A VAL 227 n 227 VAL 227 A GLY 228 n 228 GLY 228 A ALA 229 n 229 ALA 229 A THR 230 n 230 THR 230 A SER 231 n 231 SER 231 A TRP 232 n 232 TRP 232 A ALA 233 n 233 ALA 233 A TYR 234 n 234 TYR 234 A SER 235 n 235 SER 235 A VAL 236 n 236 VAL 236 A LEU 237 n 237 LEU 237 A ASP 238 n 238 ASP 238 A VAL 239 n 239 VAL 239 A PHE 240 n 240 PHE 240 A ALA 241 n 241 ALA 241 A LYS 242 n 242 LYS 242 A TYR 243 n 243 TYR 243 A VAL 244 n 244 VAL 244 A PHE 245 n 245 PHE 245 A ALA 246 n 246 ALA 246 A PHE 247 n 247 PHE 247 A ILE 248 n 248 ILE 248 A LEU 249 n 249 LEU 249 A LEU 250 n 250 LEU 250 A ARG 251 n 251 ARG 251 A TRP 252 n 252 TRP 252 A VAL 253 n 253 VAL 253 A ALA 254 n 254 ALA 254 A ASN 255 n 255 ASN 255 A ASN 256 n 256 ASN 256 A GLU 257 n 257 GLU 257 A ARG 258 n 258 ARG 258 A THR 259 n 259 THR 259 A VAL 260 n 260 VAL 260 A ALA 261 n 261 ALA 261 A VAL 262 n 262 VAL 262 A ALA 263 n 263 ALA 263 A n 264 264 A n 265 265 A n 266 266 A n 267 267 A n 268 268 A n 269 269 A n 270 270 A n 271 271 A n 272 272 A n 273 273 A n 274 274 A author_and_software_defined_assembly PISA 3 trimeric 10870 -159.0 26560 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -y+1,x-y,z crystal symmetry operation 94.4730000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_665 -x+y+1,-x+1,z crystal symmetry operation 47.2365000000 81.8160179717 0.0000000000 A N ILE 89 A N ILE 89 A O VAL 102 A O VAL 102 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A ILE 3 A ILE 3 1 Y 1 A THR 4 A THR 4 1 Y 1 A SER 5 A SER 5 1 Y 1 A VAL 6 A VAL 6 1 Y 1 A PRO 7 A PRO 7 1 Y 1 A GLY 8 A GLY 8 1 Y 1 A VAL 9 A VAL 9 1 Y 1 A VAL 10 A VAL 10 1 Y 1 A ASP 11 A ASP 11 1 Y 1 A ALA 12 A ALA 12 1 Y 1 A GLY 13 A GLY 13 1 Y 1 A VAL 14 A VAL 14 1 Y 1 A LEU 15 A LEU 15 1 Y 1 A GLY 16 A GLY 16 1 Y 1 A ALA 17 A ALA 17 1 Y 1 A GLN 18 A GLN 18 1 Y 1 A SER 19 A SER 19 1 Y 1 A ALA 20 A ALA 20 1 Y 1 A ALA 21 A ALA 21 1 Y 1 A GLY 264 A GLY 264 1 Y 1 A GLN 265 A GLN 265 1 Y 1 A THR 266 A THR 266 1 Y 1 A LEU 267 A LEU 267 1 Y 1 A GLY 268 A GLY 268 1 Y 1 A THR 269 A THR 269 1 Y 1 A MET 270 A MET 270 1 Y 1 A SER 271 A SER 271 1 Y 1 A SER 272 A SER 272 1 Y 1 A ASP 273 A ASP 273 1 Y 1 A ASP 274 A ASP 274 1 Y 1 A THR 181 -122.59 -104.42 1 A ASN 256 -142.20 38.74 1.349 0.034 0.000 1.349 0.000 -2.699 3-10 HELIX DISTORTION BETWEEN LEU A 110 AND ALA A 113. PI-BULGE BETWEEN ALA A 178 AND TRP A 183 DISRUPTS HELIX E 0.2636 0.2380 0.2380 1.7 20.0 1754 35082 5.0 99.8 RANDOM 10000 1 THROUGHOUT 2.4 MOLECULAR REPLACEMENT PDB ENTRY 1E12 76.7206 0.388698 1.7 20.0 67 1967 78 0 1822 0.01 1.2 1.600 20.000 2JAF 35303 3.000 0.14000 1 24.9000 8.000 95.9 0.74000 2.400 1 7.90 89.5 refinement CNS 1.1 data reduction XDS phasing AMoRE Ground state of halorhodopsin T203V 1 N N 2 N N 2 N N 3 N N 3 N N 4 N N 5 N N 6 N N A ASN 26 A ASN 26 HELX_P A GLY 51 A GLY 51 1 1 26 A GLY 57 A GLY 57 HELX_P A SER 82 A SER 82 1 2 26 A GLN 105 A GLN 105 HELX_P A ASP 128 A ASP 128 1 3 24 A ASP 130 A ASP 130 HELX_P A THR 154 A THR 154 1 4 25 A ALA 157 A ALA 157 HELX_P A THR 181 A THR 181 1 5 25 A THR 181 A THR 181 HELX_P A ALA 190 A ALA 190 1 6 10 A THR 192 A THR 192 HELX_P A GLY 217 A GLY 217 1 7 26 A SER 226 A SER 226 HELX_P A LYS 242 A LYS 242 1 8 17 A LYS 242 A LYS 242 HELX_P A ASN 256 A ASN 256 1 9 15 A ASN 256 A ASN 256 HELX_P A VAL 262 A VAL 262 1 10 7 covale 1.304 one A LYS 242 A NZ LYS 242 1_555 A RET 900 G C15 RET 1_555 MEMBRANE PROTEIN CHROMOPHORE, CHLORIDE PUMP, ION TRANSPORT, MEMBRANE, CHLORIDE, RECEPTOR, ION PUMP, TRANSPORT, SENSORY TRANSDUCTION, PHOTORECEPTOR PROTEIN, TRANSMEMBRANE, RETINAL PROTEIN, MEMBRANE PROTEIN BACH_HALS3 UNP 1 1 B0R2U4 MSITSVPGVVDAGVLGAQSAAAVRENALLSSSLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGL LSGLTVGMIEMPAGHALAGEMVRSQWGRYLTWALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTSALLF RWAFYAISCAFFVVVLSALVTDWAASASSAGTAEIFDTLRVLTVVLWLGYPIVWAVGVEGLALVQSVGVTSWAYSVLDVF AKYVFAFILLRWVANNERTVAVAGQTLGTMSSDD 1 274 2JAF 1 274 B0R2U4 A 1 1 274 1 THR engineered mutation VAL 203 2JAF A B0R2U4 UNP 203 203 1 VAL engineered mutation ALA 229 2JAF A B0R2U4 UNP 229 229 2 anti-parallel A GLY 87 A GLY 87 A GLU 90 A GLU 90 A MET 101 A MET 101 A SER 104 A SER 104 155 H 3 2