0.022268
0.000000
0.003663
0.000000
0.020995
0.000000
0.000000
0.000000
0.016975
0.00000
0.00000
0.00000
Arribas-Bosacoma, R.
Ferrer-Orta, C.
Kim, S.-K.
Blanco, A.G.
Pereira, P.J.B.
Gomis-Ruth, F.X.
Wanner, B.L.
Coll, M.
Sola, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
99.34
90.00
44.907
47.631
59.703
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
NA
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
N
N
354
N
O
N
355
N
O
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
366
626
10.1016/J.JMB.2006.11.038
17182055
The X-Ray Crystal Structures of Two Constitutively Active Mutants of the Escherichia Coli Phob Receiver Domain Give Insights Into Activation.
2007
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
285
675
10.1006/JMBI.1998.2326
9878437
Three-Dimensional Crystal Structure of the Transcription Factor Phob Receiver Domain.
1999
10.2210/pdb2jba/pdb
pdb_00002jba
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.933
1.0
ID14-2
ESRF
0.933
SYNCHROTRON
ESRF BEAMLINE ID14-2
14439.729
PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB
RECEIVER DOMAIN, RESIDUES 1-127
YES
1
man
polymer
14411.716
PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB
RECEIVER DOMAIN, RESIDUES 1-127
YES
1
man
polymer
22.990
SODIUM ION
2
syn
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
1
syn
non-polymer
18.015
water
303
nat
water
PHOB RESPONSE REGULATOR D53A-Y102C
PHOB RESPONSE REGULATOR D53A-Y102C
no
no
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV
MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRISPMA
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV
MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRISPMA
A
polypeptide(L)
no
no
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLKRESMTRDIPVV
MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRISPMA
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLKRESMTRDIPVV
MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRISPMA
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
562
ESCHERICHIA COLI
469008
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PBAT-4
sample
562
ESCHERICHIA COLI
469008
ESCHERICHIA COLI
BL21(DE3)
PLASMID
PBAT-4
1
2.2
36.92
8.00
3 MICROLITER OF PROTEIN SOLUTION AT 5.5 MG/ML AND 3 MICROLITER OF RESERVOIR SOLUTION (20% (W/V) PEG 4K, 0.4M SODIUM ACETATE, 0.1M TRISHCL (PH 8), 0.01M DTT
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Advisory
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2007-01-04
1
1
2011-07-13
1
2
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
PHOB RECEIVER DOMAIN FROM ESCHERICHIA COLI
PHOB EFFECTOR DOMAIN IN COMPLEX WITH PHO BOX DNA.
CRYSTAL STRUCTURE OF THE PHOB EFFECTOR DOMAIN
SOLUTION STRUCTURE OF THE DEOXYRIBONUCLEIC ACID-BINDING AND TRANSACTIVATION DOMAIN OF PHOB FROM ESCHERICHIA COLI
BEF3- ACTIVATED PHOB RECEIVER DOMAIN
THE CO-FACTOR-INDUCED PRE-ACTIVE CONFORMATION IN PHOB
PHOB RESPONSE REGULATOR RECEIVER DOMAIN CONSTITUTIVELY-ACTIVE DOUBLE MUTANT D10A AND D53E.
PDBE
Y
PDBE
2006-12-05
REL
REL
1
A
O
HOH
2079
5.81
1
B
O
HOH
2010
7.13
1
B
O
HOH
2014
6.22
NA
SODIUM ION
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HOH
water
ENGINEERED RESIDUE IN CHAIN A, ASP 53 TO ALA
ENGINEERED RESIDUE IN CHAIN A, TYR 102 TO CYS
ENGINEERED RESIDUE IN CHAIN B, ASP 53 TO ALA
ENGINEERED RESIDUE IN CHAIN B, TYR 102 TO CYS
MUTATIONS D53A,Y102C
1B00
PDB ENTRY 1B00
PDB
experimental model
NA
1127
3
NA
NA
1127
A
TRS
1128
4
TRS
TRS
1128
A
NA
1123
3
NA
NA
1123
B
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2004
5
HOH
HOH
2004
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2007
5
HOH
HOH
2007
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2010
5
HOH
HOH
2010
A
HOH
2011
5
HOH
HOH
2011
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2014
5
HOH
HOH
2014
A
HOH
2015
5
HOH
HOH
2015
A
HOH
2016
5
HOH
HOH
2016
A
HOH
2017
5
HOH
HOH
2017
A
HOH
2018
5
HOH
HOH
2018
A
HOH
2019
5
HOH
HOH
2019
A
HOH
2020
5
HOH
HOH
2020
A
HOH
2021
5
HOH
HOH
2021
A
HOH
2022
5
HOH
HOH
2022
A
HOH
2023
5
HOH
HOH
2023
A
HOH
2024
5
HOH
HOH
2024
A
HOH
2025
5
HOH
HOH
2025
A
HOH
2026
5
HOH
HOH
2026
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2029
5
HOH
HOH
2029
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2032
5
HOH
HOH
2032
A
HOH
2033
5
HOH
HOH
2033
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2035
5
HOH
HOH
2035
A
HOH
2036
5
HOH
HOH
2036
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2039
5
HOH
HOH
2039
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2041
5
HOH
HOH
2041
A
HOH
2042
5
HOH
HOH
2042
A
HOH
2043
5
HOH
HOH
2043
A
HOH
2044
5
HOH
HOH
2044
A
HOH
2045
5
HOH
HOH
2045
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2048
5
HOH
HOH
2048
A
HOH
2049
5
HOH
HOH
2049
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2054
5
HOH
HOH
2054
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2059
5
HOH
HOH
2059
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2063
5
HOH
HOH
2063
A
HOH
2064
5
HOH
HOH
2064
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2069
5
HOH
HOH
2069
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2071
5
HOH
HOH
2071
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2074
5
HOH
HOH
2074
A
HOH
2075
5
HOH
HOH
2075
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2077
5
HOH
HOH
2077
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2079
5
HOH
HOH
2079
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2081
5
HOH
HOH
2081
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2083
5
HOH
HOH
2083
A
HOH
2084
5
HOH
HOH
2084
A
HOH
2085
5
HOH
HOH
2085
A
HOH
2086
5
HOH
HOH
2086
A
HOH
2087
5
HOH
HOH
2087
A
HOH
2088
5
HOH
HOH
2088
A
HOH
2089
5
HOH
HOH
2089
A
HOH
2090
5
HOH
HOH
2090
A
HOH
2091
5
HOH
HOH
2091
A
HOH
2092
5
HOH
HOH
2092
A
HOH
2093
5
HOH
HOH
2093
A
HOH
2094
5
HOH
HOH
2094
A
HOH
2095
5
HOH
HOH
2095
A
HOH
2096
5
HOH
HOH
2096
A
HOH
2097
5
HOH
HOH
2097
A
HOH
2098
5
HOH
HOH
2098
A
HOH
2099
5
HOH
HOH
2099
A
HOH
2100
5
HOH
HOH
2100
A
HOH
2101
5
HOH
HOH
2101
A
HOH
2102
5
HOH
HOH
2102
A
HOH
2103
5
HOH
HOH
2103
A
HOH
2104
5
HOH
HOH
2104
A
HOH
2105
5
HOH
HOH
2105
A
HOH
2106
5
HOH
HOH
2106
A
HOH
2107
5
HOH
HOH
2107
A
HOH
2108
5
HOH
HOH
2108
A
HOH
2109
5
HOH
HOH
2109
A
HOH
2110
5
HOH
HOH
2110
A
HOH
2111
5
HOH
HOH
2111
A
HOH
2112
5
HOH
HOH
2112
A
HOH
2113
5
HOH
HOH
2113
A
HOH
2114
5
HOH
HOH
2114
A
HOH
2115
5
HOH
HOH
2115
A
HOH
2116
5
HOH
HOH
2116
A
HOH
2117
5
HOH
HOH
2117
A
HOH
2118
5
HOH
HOH
2118
A
HOH
2119
5
HOH
HOH
2119
A
HOH
2120
5
HOH
HOH
2120
A
HOH
2121
5
HOH
HOH
2121
A
HOH
2122
5
HOH
HOH
2122
A
HOH
2123
5
HOH
HOH
2123
A
HOH
2124
5
HOH
HOH
2124
A
HOH
2125
5
HOH
HOH
2125
A
HOH
2126
5
HOH
HOH
2126
A
HOH
2127
5
HOH
HOH
2127
A
HOH
2128
5
HOH
HOH
2128
A
HOH
2129
5
HOH
HOH
2129
A
HOH
2130
5
HOH
HOH
2130
A
HOH
2131
5
HOH
HOH
2131
A
HOH
2132
5
HOH
HOH
2132
A
HOH
2133
5
HOH
HOH
2133
A
HOH
2134
5
HOH
HOH
2134
A
HOH
2135
5
HOH
HOH
2135
A
HOH
2136
5
HOH
HOH
2136
A
HOH
2137
5
HOH
HOH
2137
A
HOH
2138
5
HOH
HOH
2138
A
HOH
2139
5
HOH
HOH
2139
A
HOH
2140
5
HOH
HOH
2140
A
HOH
2141
5
HOH
HOH
2141
A
HOH
2142
5
HOH
HOH
2142
A
HOH
2143
5
HOH
HOH
2143
A
HOH
2144
5
HOH
HOH
2144
A
HOH
2145
5
HOH
HOH
2145
A
HOH
2146
5
HOH
HOH
2146
A
HOH
2147
5
HOH
HOH
2147
A
HOH
2148
5
HOH
HOH
2148
A
HOH
2149
5
HOH
HOH
2149
A
HOH
2150
5
HOH
HOH
2150
A
HOH
2151
5
HOH
HOH
2151
A
HOH
2152
5
HOH
HOH
2152
A
HOH
2153
5
HOH
HOH
2153
A
HOH
2154
5
HOH
HOH
2154
A
HOH
2155
5
HOH
HOH
2155
A
HOH
2156
5
HOH
HOH
2156
A
HOH
2157
5
HOH
HOH
2157
A
HOH
2158
5
HOH
HOH
2158
A
HOH
2159
5
HOH
HOH
2159
A
HOH
2160
5
HOH
HOH
2160
A
HOH
2161
5
HOH
HOH
2161
A
HOH
2162
5
HOH
HOH
2162
A
HOH
2163
5
HOH
HOH
2163
A
HOH
2164
5
HOH
HOH
2164
A
HOH
2165
5
HOH
HOH
2165
A
HOH
2166
5
HOH
HOH
2166
A
HOH
2167
5
HOH
HOH
2167
A
HOH
2168
5
HOH
HOH
2168
A
HOH
2169
5
HOH
HOH
2169
A
HOH
2170
5
HOH
HOH
2170
A
HOH
2171
5
HOH
HOH
2171
A
HOH
2001
5
HOH
HOH
2001
B
HOH
2002
5
HOH
HOH
2002
B
HOH
2003
5
HOH
HOH
2003
B
HOH
2004
5
HOH
HOH
2004
B
HOH
2005
5
HOH
HOH
2005
B
HOH
2006
5
HOH
HOH
2006
B
HOH
2007
5
HOH
HOH
2007
B
HOH
2008
5
HOH
HOH
2008
B
HOH
2009
5
HOH
HOH
2009
B
HOH
2010
5
HOH
HOH
2010
B
HOH
2011
5
HOH
HOH
2011
B
HOH
2012
5
HOH
HOH
2012
B
HOH
2013
5
HOH
HOH
2013
B
HOH
2014
5
HOH
HOH
2014
B
HOH
2015
5
HOH
HOH
2015
B
HOH
2016
5
HOH
HOH
2016
B
HOH
2017
5
HOH
HOH
2017
B
HOH
2018
5
HOH
HOH
2018
B
HOH
2019
5
HOH
HOH
2019
B
HOH
2020
5
HOH
HOH
2020
B
HOH
2021
5
HOH
HOH
2021
B
HOH
2022
5
HOH
HOH
2022
B
HOH
2023
5
HOH
HOH
2023
B
HOH
2024
5
HOH
HOH
2024
B
HOH
2025
5
HOH
HOH
2025
B
HOH
2026
5
HOH
HOH
2026
B
HOH
2027
5
HOH
HOH
2027
B
HOH
2028
5
HOH
HOH
2028
B
HOH
2029
5
HOH
HOH
2029
B
HOH
2030
5
HOH
HOH
2030
B
HOH
2031
5
HOH
HOH
2031
B
HOH
2032
5
HOH
HOH
2032
B
HOH
2033
5
HOH
HOH
2033
B
HOH
2034
5
HOH
HOH
2034
B
HOH
2035
5
HOH
HOH
2035
B
HOH
2036
5
HOH
HOH
2036
B
HOH
2037
5
HOH
HOH
2037
B
HOH
2038
5
HOH
HOH
2038
B
HOH
2039
5
HOH
HOH
2039
B
HOH
2040
5
HOH
HOH
2040
B
HOH
2041
5
HOH
HOH
2041
B
HOH
2042
5
HOH
HOH
2042
B
HOH
2043
5
HOH
HOH
2043
B
HOH
2044
5
HOH
HOH
2044
B
HOH
2045
5
HOH
HOH
2045
B
HOH
2046
5
HOH
HOH
2046
B
HOH
2047
5
HOH
HOH
2047
B
HOH
2048
5
HOH
HOH
2048
B
HOH
2049
5
HOH
HOH
2049
B
HOH
2050
5
HOH
HOH
2050
B
HOH
2051
5
HOH
HOH
2051
B
HOH
2052
5
HOH
HOH
2052
B
HOH
2053
5
HOH
HOH
2053
B
HOH
2054
5
HOH
HOH
2054
B
HOH
2055
5
HOH
HOH
2055
B
HOH
2056
5
HOH
HOH
2056
B
HOH
2057
5
HOH
HOH
2057
B
HOH
2058
5
HOH
HOH
2058
B
HOH
2059
5
HOH
HOH
2059
B
HOH
2060
5
HOH
HOH
2060
B
HOH
2061
5
HOH
HOH
2061
B
HOH
2062
5
HOH
HOH
2062
B
HOH
2063
5
HOH
HOH
2063
B
HOH
2064
5
HOH
HOH
2064
B
HOH
2065
5
HOH
HOH
2065
B
HOH
2066
5
HOH
HOH
2066
B
HOH
2067
5
HOH
HOH
2067
B
HOH
2068
5
HOH
HOH
2068
B
HOH
2069
5
HOH
HOH
2069
B
HOH
2070
5
HOH
HOH
2070
B
HOH
2071
5
HOH
HOH
2071
B
HOH
2072
5
HOH
HOH
2072
B
HOH
2073
5
HOH
HOH
2073
B
HOH
2074
5
HOH
HOH
2074
B
HOH
2075
5
HOH
HOH
2075
B
HOH
2076
5
HOH
HOH
2076
B
HOH
2077
5
HOH
HOH
2077
B
HOH
2078
5
HOH
HOH
2078
B
HOH
2079
5
HOH
HOH
2079
B
HOH
2080
5
HOH
HOH
2080
B
HOH
2081
5
HOH
HOH
2081
B
HOH
2082
5
HOH
HOH
2082
B
HOH
2083
5
HOH
HOH
2083
B
HOH
2084
5
HOH
HOH
2084
B
HOH
2085
5
HOH
HOH
2085
B
HOH
2086
5
HOH
HOH
2086
B
HOH
2087
5
HOH
HOH
2087
B
HOH
2088
5
HOH
HOH
2088
B
HOH
2089
5
HOH
HOH
2089
B
HOH
2090
5
HOH
HOH
2090
B
HOH
2091
5
HOH
HOH
2091
B
HOH
2092
5
HOH
HOH
2092
B
HOH
2093
5
HOH
HOH
2093
B
HOH
2094
5
HOH
HOH
2094
B
HOH
2095
5
HOH
HOH
2095
B
HOH
2096
5
HOH
HOH
2096
B
HOH
2097
5
HOH
HOH
2097
B
HOH
2098
5
HOH
HOH
2098
B
HOH
2099
5
HOH
HOH
2099
B
HOH
2100
5
HOH
HOH
2100
B
HOH
2101
5
HOH
HOH
2101
B
HOH
2102
5
HOH
HOH
2102
B
HOH
2103
5
HOH
HOH
2103
B
HOH
2104
5
HOH
HOH
2104
B
HOH
2105
5
HOH
HOH
2105
B
HOH
2106
5
HOH
HOH
2106
B
HOH
2107
5
HOH
HOH
2107
B
HOH
2108
5
HOH
HOH
2108
B
HOH
2109
5
HOH
HOH
2109
B
HOH
2110
5
HOH
HOH
2110
B
HOH
2111
5
HOH
HOH
2111
B
HOH
2112
5
HOH
HOH
2112
B
HOH
2113
5
HOH
HOH
2113
B
HOH
2114
5
HOH
HOH
2114
B
HOH
2115
5
HOH
HOH
2115
B
HOH
2116
5
HOH
HOH
2116
B
HOH
2117
5
HOH
HOH
2117
B
HOH
2118
5
HOH
HOH
2118
B
HOH
2119
5
HOH
HOH
2119
B
HOH
2120
5
HOH
HOH
2120
B
HOH
2121
5
HOH
HOH
2121
B
HOH
2122
5
HOH
HOH
2122
B
HOH
2123
5
HOH
HOH
2123
B
HOH
2124
5
HOH
HOH
2124
B
HOH
2125
5
HOH
HOH
2125
B
HOH
2126
5
HOH
HOH
2126
B
HOH
2127
5
HOH
HOH
2127
B
HOH
2128
5
HOH
HOH
2128
B
HOH
2129
5
HOH
HOH
2129
B
HOH
2130
5
HOH
HOH
2130
B
HOH
2131
5
HOH
HOH
2131
B
HOH
2132
5
HOH
HOH
2132
B
n
1
1
A
ALA
2
n
2
ALA
2
A
ARG
3
n
3
ARG
3
A
ARG
4
n
4
ARG
4
A
ILE
5
n
5
ILE
5
A
LEU
6
n
6
LEU
6
A
VAL
7
n
7
VAL
7
A
VAL
8
n
8
VAL
8
A
GLU
9
n
9
GLU
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
ALA
12
n
12
ALA
12
A
PRO
13
n
13
PRO
13
A
ILE
14
n
14
ILE
14
A
ARG
15
n
15
ARG
15
A
GLU
16
n
16
GLU
16
A
MET
17
n
17
MET
17
A
VAL
18
n
18
VAL
18
A
CYS
19
n
19
CYS
19
A
PHE
20
n
20
PHE
20
A
VAL
21
n
21
VAL
21
A
LEU
22
n
22
LEU
22
A
GLU
23
n
23
GLU
23
A
GLN
24
n
24
GLN
24
A
ASN
25
n
25
ASN
25
A
GLY
26
n
26
GLY
26
A
PHE
27
n
27
PHE
27
A
GLN
28
n
28
GLN
28
A
PRO
29
n
29
PRO
29
A
VAL
30
n
30
VAL
30
A
GLU
31
n
31
GLU
31
A
ALA
32
n
32
ALA
32
A
GLU
33
n
33
GLU
33
A
ASP
34
n
34
ASP
34
A
TYR
35
n
35
TYR
35
A
ASP
36
n
36
ASP
36
A
SER
37
n
37
SER
37
A
ALA
38
n
38
ALA
38
A
VAL
39
n
39
VAL
39
A
ASN
40
n
40
ASN
40
A
GLN
41
n
41
GLN
41
A
LEU
42
n
42
LEU
42
A
ASN
43
n
43
ASN
43
A
GLU
44
n
44
GLU
44
A
PRO
45
n
45
PRO
45
A
TRP
46
n
46
TRP
46
A
PRO
47
n
47
PRO
47
A
ASP
48
n
48
ASP
48
A
LEU
49
n
49
LEU
49
A
ILE
50
n
50
ILE
50
A
LEU
51
n
51
LEU
51
A
LEU
52
n
52
LEU
52
A
ALA
53
n
53
ALA
53
A
TRP
54
n
54
TRP
54
A
MET
55
n
55
MET
55
A
LEU
56
n
56
LEU
56
A
PRO
57
n
57
PRO
57
A
GLY
58
n
58
GLY
58
A
GLY
59
n
59
GLY
59
A
SER
60
n
60
SER
60
A
GLY
61
n
61
GLY
61
A
ILE
62
n
62
ILE
62
A
GLN
63
n
63
GLN
63
A
PHE
64
n
64
PHE
64
A
ILE
65
n
65
ILE
65
A
LYS
66
n
66
LYS
66
A
HIS
67
n
67
HIS
67
A
LEU
68
n
68
LEU
68
A
ARG
69
n
69
ARG
69
A
ARG
70
n
70
ARG
70
A
GLU
71
n
71
GLU
71
A
SER
72
n
72
SER
72
A
MET
73
n
73
MET
73
A
THR
74
n
74
THR
74
A
ARG
75
n
75
ARG
75
A
ASP
76
n
76
ASP
76
A
ILE
77
n
77
ILE
77
A
PRO
78
n
78
PRO
78
A
VAL
79
n
79
VAL
79
A
VAL
80
n
80
VAL
80
A
MET
81
n
81
MET
81
A
LEU
82
n
82
LEU
82
A
THR
83
n
83
THR
83
A
ALA
84
n
84
ALA
84
A
ARG
85
n
85
ARG
85
A
GLY
86
n
86
GLY
86
A
GLU
87
n
87
GLU
87
A
GLU
88
n
88
GLU
88
A
GLU
89
n
89
GLU
89
A
ASP
90
n
90
ASP
90
A
ARG
91
n
91
ARG
91
A
VAL
92
n
92
VAL
92
A
ARG
93
n
93
ARG
93
A
GLY
94
n
94
GLY
94
A
LEU
95
n
95
LEU
95
A
GLU
96
n
96
GLU
96
A
THR
97
n
97
THR
97
A
GLY
98
n
98
GLY
98
A
ALA
99
n
99
ALA
99
A
ASP
100
n
100
ASP
100
A
ASP
101
n
101
ASP
101
A
CYS
102
n
102
CYS
102
A
ILE
103
n
103
ILE
103
A
THR
104
n
104
THR
104
A
LYS
105
n
105
LYS
105
A
PRO
106
n
106
PRO
106
A
PHE
107
n
107
PHE
107
A
SER
108
n
108
SER
108
A
PRO
109
n
109
PRO
109
A
LYS
110
n
110
LYS
110
A
GLU
111
n
111
GLU
111
A
LEU
112
n
112
LEU
112
A
VAL
113
n
113
VAL
113
A
ALA
114
n
114
ALA
114
A
ARG
115
n
115
ARG
115
A
ILE
116
n
116
ILE
116
A
LYS
117
n
117
LYS
117
A
ALA
118
n
118
ALA
118
A
VAL
119
n
119
VAL
119
A
MET
120
n
120
MET
120
A
ARG
121
n
121
ARG
121
A
ARG
122
n
122
ARG
122
A
ILE
123
n
123
ILE
123
A
SER
124
n
124
SER
124
A
PRO
125
n
125
PRO
125
A
MET
126
n
126
MET
126
A
n
127
127
A
n
1
1
B
ALA
2
n
2
ALA
2
B
ARG
3
n
3
ARG
3
B
ARG
4
n
4
ARG
4
B
ILE
5
n
5
ILE
5
B
LEU
6
n
6
LEU
6
B
VAL
7
n
7
VAL
7
B
VAL
8
n
8
VAL
8
B
GLU
9
n
9
GLU
9
B
ASP
10
n
10
ASP
10
B
GLU
11
n
11
GLU
11
B
ALA
12
n
12
ALA
12
B
PRO
13
n
13
PRO
13
B
ILE
14
n
14
ILE
14
B
ARG
15
n
15
ARG
15
B
GLU
16
n
16
GLU
16
B
MET
17
n
17
MET
17
B
VAL
18
n
18
VAL
18
B
CYS
19
n
19
CYS
19
B
PHE
20
n
20
PHE
20
B
VAL
21
n
21
VAL
21
B
LEU
22
n
22
LEU
22
B
GLU
23
n
23
GLU
23
B
GLN
24
n
24
GLN
24
B
ASN
25
n
25
ASN
25
B
GLY
26
n
26
GLY
26
B
PHE
27
n
27
PHE
27
B
GLN
28
n
28
GLN
28
B
PRO
29
n
29
PRO
29
B
VAL
30
n
30
VAL
30
B
GLU
31
n
31
GLU
31
B
ALA
32
n
32
ALA
32
B
GLU
33
n
33
GLU
33
B
ASP
34
n
34
ASP
34
B
TYR
35
n
35
TYR
35
B
ASP
36
n
36
ASP
36
B
SER
37
n
37
SER
37
B
ALA
38
n
38
ALA
38
B
VAL
39
n
39
VAL
39
B
ASN
40
n
40
ASN
40
B
GLN
41
n
41
GLN
41
B
LEU
42
n
42
LEU
42
B
ASN
43
n
43
ASN
43
B
GLU
44
n
44
GLU
44
B
PRO
45
n
45
PRO
45
B
TRP
46
n
46
TRP
46
B
PRO
47
n
47
PRO
47
B
ASP
48
n
48
ASP
48
B
LEU
49
n
49
LEU
49
B
ILE
50
n
50
ILE
50
B
LEU
51
n
51
LEU
51
B
LEU
52
n
52
LEU
52
B
ALA
53
n
53
ALA
53
B
TRP
54
n
54
TRP
54
B
MET
55
n
55
MET
55
B
LEU
56
n
56
LEU
56
B
PRO
57
n
57
PRO
57
B
GLY
58
n
58
GLY
58
B
GLY
59
n
59
GLY
59
B
SER
60
n
60
SER
60
B
GLY
61
n
61
GLY
61
B
ILE
62
n
62
ILE
62
B
GLN
63
n
63
GLN
63
B
PHE
64
n
64
PHE
64
B
ILE
65
n
65
ILE
65
B
LYS
66
n
66
LYS
66
B
HIS
67
n
67
HIS
67
B
LEU
68
n
68
LEU
68
B
LYS
69
n
69
LYS
69
B
ARG
70
n
70
ARG
70
B
GLU
71
n
71
GLU
71
B
SER
72
n
72
SER
72
B
MET
73
n
73
MET
73
B
THR
74
n
74
THR
74
B
ARG
75
n
75
ARG
75
B
ASP
76
n
76
ASP
76
B
ILE
77
n
77
ILE
77
B
PRO
78
n
78
PRO
78
B
VAL
79
n
79
VAL
79
B
VAL
80
n
80
VAL
80
B
MET
81
n
81
MET
81
B
LEU
82
n
82
LEU
82
B
THR
83
n
83
THR
83
B
ALA
84
n
84
ALA
84
B
ARG
85
n
85
ARG
85
B
GLY
86
n
86
GLY
86
B
GLU
87
n
87
GLU
87
B
GLU
88
n
88
GLU
88
B
GLU
89
n
89
GLU
89
B
ASP
90
n
90
ASP
90
B
ARG
91
n
91
ARG
91
B
VAL
92
n
92
VAL
92
B
ARG
93
n
93
ARG
93
B
GLY
94
n
94
GLY
94
B
LEU
95
n
95
LEU
95
B
GLU
96
n
96
GLU
96
B
THR
97
n
97
THR
97
B
GLY
98
n
98
GLY
98
B
ALA
99
n
99
ALA
99
B
ASP
100
n
100
ASP
100
B
ASP
101
n
101
ASP
101
B
CYS
102
n
102
CYS
102
B
ILE
103
n
103
ILE
103
B
THR
104
n
104
THR
104
B
LYS
105
n
105
LYS
105
B
PRO
106
n
106
PRO
106
B
PHE
107
n
107
PHE
107
B
SER
108
n
108
SER
108
B
PRO
109
n
109
PRO
109
B
LYS
110
n
110
LYS
110
B
GLU
111
n
111
GLU
111
B
LEU
112
n
112
LEU
112
B
VAL
113
n
113
VAL
113
B
ALA
114
n
114
ALA
114
B
ARG
115
n
115
ARG
115
B
ILE
116
n
116
ILE
116
B
LYS
117
n
117
LYS
117
B
ALA
118
n
118
ALA
118
B
VAL
119
n
119
VAL
119
B
MET
120
n
120
MET
120
B
ARG
121
n
121
ARG
121
B
ARG
122
n
122
ARG
122
B
n
123
123
B
n
124
124
B
n
125
125
B
n
126
126
B
n
127
127
B
1.3004
-0.2746
0.2135
1.3871
-0.3798
2.0960
0.0088
0.1255
-0.0581
-0.0747
-0.0415
-0.0029
0.0692
-0.0023
0.0326
0.1449
0.0050
-0.0130
0.1372
-0.0008
0.0872
refined
12.1960
0.2980
21.3910
X-RAY DIFFRACTION
2.5992
0.7850
-0.8013
1.4137
-0.0267
3.2516
0.1336
-0.2374
0.0698
0.0714
-0.1550
0.0715
-0.1839
-0.0076
0.0214
0.1566
-0.0214
-0.0168
0.1524
-0.0232
0.0515
refined
-2.7690
-0.1030
48.1200
X-RAY DIFFRACTION
-0.3302
-0.2733
-0.4284
-0.8615
0.4106
0.4258
-0.0165
0.0847
-0.1270
0.0371
-0.1644
-0.0355
-0.1756
-0.2216
0.1809
0.1706
0.0270
-0.0115
0.1845
-0.0334
0.1634
refined
-2.9260
0.2490
30.5480
X-RAY DIFFRACTION
29.0143
33.2557
16.8625
-6.3964
1.1377
-59.2765
0.0250
1.5639
-1.0907
1.1595
-0.4153
-1.4031
1.5461
0.8527
0.3903
0.1551
-0.0051
-0.0024
0.1625
0.0017
0.1655
refined
28.0520
1.5200
20.6700
X-RAY DIFFRACTION
0.8437
0.2536
-0.3583
0.3556
-0.2879
1.0069
0.0381
0.0119
0.0111
-0.0040
-0.0440
0.0101
-0.0118
-0.0023
0.0059
0.0896
-0.0033
-0.0436
0.0537
-0.0263
0.0378
refined
6.6150
0.0580
31.0140
X-RAY DIFFRACTION
A
2
A
126
X-RAY DIFFRACTION
1
B
2
B
122
X-RAY DIFFRACTION
2
A
1127
A
1127
X-RAY DIFFRACTION
3
B
1123
B
1123
X-RAY DIFFRACTION
3
A
1128
A
1128
X-RAY DIFFRACTION
4
A
2001
A
2171
X-RAY DIFFRACTION
5
B
2001
B
2132
X-RAY DIFFRACTION
5
software_defined_assembly
PISA
2
dimeric
1610
-28.0
12730
A
ASP
10
A
OD1
ASP
10
1_555
A
NA
1127
C
NA
NA
1_555
A
MET
55
A
O
MET
55
1_555
87.4
A
ASP
10
A
OD1
ASP
10
1_555
A
NA
1127
C
NA
NA
1_555
A
HOH
2007
F
O
HOH
1_555
124.5
A
MET
55
A
O
MET
55
1_555
A
NA
1127
C
NA
NA
1_555
A
HOH
2007
F
O
HOH
1_555
106.0
A
ASP
10
A
OD1
ASP
10
1_555
A
NA
1127
C
NA
NA
1_555
A
HOH
2011
F
O
HOH
1_555
85.4
A
MET
55
A
O
MET
55
1_555
A
NA
1127
C
NA
NA
1_555
A
HOH
2011
F
O
HOH
1_555
151.2
A
HOH
2007
F
O
HOH
1_555
A
NA
1127
C
NA
NA
1_555
A
HOH
2011
F
O
HOH
1_555
101.0
A
ASP
10
A
OD1
ASP
10
1_555
A
NA
1127
C
NA
NA
1_555
A
HOH
2090
F
O
HOH
1_555
150.1
A
MET
55
A
O
MET
55
1_555
A
NA
1127
C
NA
NA
1_555
A
HOH
2090
F
O
HOH
1_555
89.4
A
HOH
2007
F
O
HOH
1_555
A
NA
1127
C
NA
NA
1_555
A
HOH
2090
F
O
HOH
1_555
84.8
A
HOH
2011
F
O
HOH
1_555
A
NA
1127
C
NA
NA
1_555
A
HOH
2090
F
O
HOH
1_555
83.3
B
ASP
10
B
OD1
ASP
10
1_555
B
NA
1123
E
NA
NA
1_555
B
MET
55
B
O
MET
55
1_555
86.8
B
ASP
10
B
OD1
ASP
10
1_555
B
NA
1123
E
NA
NA
1_555
B
HOH
2020
G
O
HOH
1_555
85.9
B
MET
55
B
O
MET
55
1_555
B
NA
1123
E
NA
NA
1_555
B
HOH
2020
G
O
HOH
1_555
147.9
B
ASP
10
B
OD1
ASP
10
1_555
B
NA
1123
E
NA
NA
1_555
B
HOH
2051
G
O
HOH
1_555
124.4
B
MET
55
B
O
MET
55
1_555
B
NA
1123
E
NA
NA
1_555
B
HOH
2051
G
O
HOH
1_555
104.6
B
HOH
2020
G
O
HOH
1_555
B
NA
1123
E
NA
NA
1_555
B
HOH
2051
G
O
HOH
1_555
105.2
B
ASP
10
B
OD1
ASP
10
1_555
B
NA
1123
E
NA
NA
1_555
B
HOH
2102
G
O
HOH
1_555
148.2
B
MET
55
B
O
MET
55
1_555
B
NA
1123
E
NA
NA
1_555
B
HOH
2102
G
O
HOH
1_555
89.4
B
HOH
2020
G
O
HOH
1_555
B
NA
1123
E
NA
NA
1_555
B
HOH
2102
G
O
HOH
1_555
80.7
B
HOH
2051
G
O
HOH
1_555
B
NA
1123
E
NA
NA
1_555
B
HOH
2102
G
O
HOH
1_555
87.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
30
A
N
VAL
30
A
O
ILE
5
A
O
ILE
5
A
N
LEU
6
A
N
LEU
6
A
O
LEU
49
A
O
LEU
49
A
N
LEU
52
A
N
LEU
52
A
O
VAL
80
A
O
VAL
80
A
N
MET
81
A
N
MET
81
A
O
ASP
101
A
O
ASP
101
A
N
LEU
56
A
N
LEU
56
A
O
GLY
59
A
O
GLY
59
B
N
VAL
30
B
N
VAL
30
B
O
ILE
5
B
O
ILE
5
B
N
LEU
6
B
N
LEU
6
B
O
LEU
49
B
O
LEU
49
B
N
LEU
52
B
N
LEU
52
B
O
VAL
80
B
O
VAL
80
B
N
MET
81
B
N
MET
81
B
O
ASP
101
B
O
ASP
101
B
N
LEU
56
B
N
LEU
56
B
O
GLY
59
B
O
GLY
59
1
A
MET
1
A
MET
1
1
Y
1
A
ALA
127
A
ALA
127
1
Y
1
B
MET
1
B
MET
1
1
Y
1
B
ILE
123
B
ILE
123
1
Y
1
B
SER
124
B
SER
124
1
Y
1
B
PRO
125
B
PRO
125
1
Y
1
B
MET
126
B
MET
126
1
Y
1
B
ALA
127
B
ALA
127
1
Y
1
A
A
O
O
HOH
HOH
2071
2146
1.83
1
A
A
NH2
O
ARG
HOH
69
2105
2.04
1
5.49
0.90
118.30
123.79
A
A
A
CB
CG
OD2
ASP
ASP
ASP
90
90
90
N
12.69
0.29000
0.00000
0.32000
-0.09000
0.00000
-0.10000
0.961
0.957
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.204
0.189
0.189
1.45
50.00
770
41049
1.800
99.9
1.224
0.047
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.074
0.070
0.80
0.80
1.40
PDB ENTRY 1B00
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.45
50.00
303
2270
10
0
1957
0.010
0.022
2019
1.309
1.980
2731
5.120
5.000
244
0.088
0.200
309
0.005
0.020
1507
0.217
0.200
945
0.153
0.200
223
0.148
0.200
53
0.142
0.200
32
0.739
1.500
1241
1.424
2.000
2025
2.431
3.000
778
4.095
4.500
706
0.2890
0.2840
1.49
36
2092
20
1.450
58.70
2JBA
41827
0.00
0.070
1
15.20
3.20
94.5
0.290
1.45
1.53
2.30
1
3.20
70.3
refinement
REFMAC
5.1.24
data reduction
MOSFLM
data scaling
SCALA
phasing
AMoRE
PhoB response regulator receiver domain constitutively-active double mutant D53A and Y102C.
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
5
N
N
5
N
N
A
GLU
11
A
GLU
11
HELX_P
A
ASN
25
A
ASN
25
1
1
15
A
ASP
34
A
ASP
34
HELX_P
A
ASN
40
A
ASN
40
1
2
7
A
GLY
61
A
GLY
61
HELX_P
A
ARG
70
A
ARG
70
1
3
10
A
GLY
86
A
GLY
86
HELX_P
A
ARG
93
A
ARG
93
1
4
8
A
SER
108
A
SER
108
HELX_P
A
ARG
122
A
ARG
122
1
5
15
B
GLU
11
B
GLU
11
HELX_P
B
ASN
25
B
ASN
25
1
6
15
B
ASP
34
B
ASP
34
HELX_P
B
ASN
40
B
ASN
40
1
7
7
B
GLY
61
B
GLY
61
HELX_P
B
ARG
70
B
ARG
70
1
8
10
B
GLY
86
B
GLY
86
HELX_P
B
ARG
93
B
ARG
93
1
9
8
B
SER
108
B
SER
108
HELX_P
B
ARG
122
B
ARG
122
1
10
15
metalc
2.333
A
ASP
10
A
OD1
ASP
10
1_555
A
NA
1127
C
NA
NA
1_555
metalc
2.340
A
MET
55
A
O
MET
55
1_555
A
NA
1127
C
NA
NA
1_555
metalc
2.354
A
NA
1127
C
NA
NA
1_555
A
HOH
2007
F
O
HOH
1_555
metalc
2.400
A
NA
1127
C
NA
NA
1_555
A
HOH
2011
F
O
HOH
1_555
metalc
2.436
A
NA
1127
C
NA
NA
1_555
A
HOH
2090
F
O
HOH
1_555
metalc
2.310
B
ASP
10
B
OD1
ASP
10
1_555
B
NA
1123
E
NA
NA
1_555
metalc
2.316
B
MET
55
B
O
MET
55
1_555
B
NA
1123
E
NA
NA
1_555
metalc
2.370
B
NA
1123
E
NA
NA
1_555
B
HOH
2020
G
O
HOH
1_555
metalc
2.437
B
NA
1123
E
NA
NA
1_555
B
HOH
2051
G
O
HOH
1_555
metalc
2.440
B
NA
1123
E
NA
NA
1_555
B
HOH
2102
G
O
HOH
1_555
TRANSCRIPTION
TRANSCRIPTION FACTOR, SENSORY TRANSDUCTION, PHOSPHATE REGULATION, TRANSCRIPTION REGULATION, ACTIVATOR, TRANSPORT, DNA-BINDING, CONSTITUTIVELY-ACTIVE MUTANT, TWO-COMPONENT REGULATORY SYSTEM, GENE REGULATION, PHOSPHATE TRANSPORT, ACTIVATION OF THE PHO REGULON, TRANSCRIPTION, PHOSPHORYLATION, ALPHA/BETA DOUBLY WOUN FOLD
A
GLU
44
A
GLU
44
1
A
PRO
45
A
PRO
45
-5.23
A
LYS
105
A
LYS
105
1
A
PRO
106
A
PRO
106
0.63
B
GLU
44
B
GLU
44
1
B
PRO
45
B
PRO
45
-2.69
B
LYS
105
B
LYS
105
1
B
PRO
106
B
PRO
106
0.99
PHOB_ECOLI
UNP
1
P0AFJ5
PHOB_ECOLI
UNP
2
P0AFJ5
1
127
2JBA
1
127
P0AFJ5
A
1
1
127
1
127
2JBA
1
127
P0AFJ5
B
2
1
127
1
ASP
engineered mutation
ALA
53
2JBA
A
P0AFJ5
UNP
53
53
1
LYS
conflict
ARG
69
2JBA
A
P0AFJ5
UNP
69
69
1
TYR
engineered mutation
CYS
102
2JBA
A
P0AFJ5
UNP
102
102
2
ASP
engineered mutation
ALA
53
2JBA
B
P0AFJ5
UNP
53
53
2
TYR
engineered mutation
CYS
102
2JBA
B
P0AFJ5
UNP
102
102
5
2
5
2
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
A
GLN
28
A
GLN
28
A
ALA
32
A
ALA
32
A
ARG
4
A
ARG
4
A
VAL
8
A
VAL
8
A
LEU
49
A
LEU
49
A
ALA
53
A
ALA
53
A
VAL
79
A
VAL
79
A
ALA
84
A
ALA
84
A
ASP
101
A
ASP
101
A
LYS
105
A
LYS
105
A
MET
55
A
MET
55
A
LEU
56
A
LEU
56
A
GLY
59
A
GLY
59
A
SER
60
A
SER
60
B
GLN
28
B
GLN
28
B
ALA
32
B
ALA
32
B
ARG
4
B
ARG
4
B
VAL
8
B
VAL
8
B
LEU
49
B
LEU
49
B
ALA
53
B
ALA
53
B
VAL
79
B
VAL
79
B
ALA
84
B
ALA
84
B
ASP
101
B
ASP
101
B
LYS
105
B
LYS
105
B
MET
55
B
MET
55
B
LEU
56
B
LEU
56
B
GLY
59
B
GLY
59
B
SER
60
B
SER
60
BINDING SITE FOR RESIDUE NA A1127
Software
5
BINDING SITE FOR RESIDUE NA B1123
Software
5
BINDING SITE FOR RESIDUE TRS A1128
Software
9
A
ASP
10
A
ASP
10
5
1_555
A
MET
55
A
MET
55
5
1_555
A
HOH
2007
F
HOH
5
1_555
A
HOH
2011
F
HOH
5
1_555
A
HOH
2090
F
HOH
5
1_555
B
ASP
10
B
ASP
10
5
1_555
B
MET
55
B
MET
55
5
1_555
B
HOH
2020
G
HOH
5
1_555
B
HOH
2051
G
HOH
5
1_555
B
HOH
2102
G
HOH
5
1_555
A
ALA
2
A
ALA
2
9
1_555
A
GLU
44
A
GLU
44
9
1_555
A
PRO
45
A
PRO
45
9
1_555
A
TRP
46
A
TRP
46
9
1_555
A
ASP
48
A
ASP
48
9
1_555
A
HOH
2083
F
HOH
9
1_555
A
HOH
2167
F
HOH
9
1_555
A
HOH
2170
F
HOH
9
1_555
A
HOH
2171
F
HOH
9
1_555
4
P 1 21 1