0.009522
0.000000
0.000000
0.000000
0.009522
0.000000
0.000000
0.000000
0.009522
0.00000
0.00000
0.00000
Komander, D.
Odenwaelder, P.
Barford, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
90.00
105.021
105.021
105.021
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
Co 2
58.933
COBALT (II) ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CD
N
75
N
CL
N
76
N
CO
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
N
N
98
S
C
N
99
N
C
N
100
N
O
N
101
N
C
N
102
N
C
N
103
N
C
N
104
N
O
N
105
N
O
N
106
N
O
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
N
C
N
118
N
C
N
119
N
O
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
N
N
127
S
C
N
128
N
C
N
129
N
O
N
130
N
C
Y
131
N
C
Y
132
N
N
Y
133
N
C
Y
134
N
C
Y
135
N
N
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
N
N
151
S
C
N
152
N
C
N
153
N
O
N
154
S
C
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
S
C
N
174
N
C
N
175
N
O
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
N
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
S
N
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
MG
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
Y
248
N
C
Y
249
N
C
Y
250
N
C
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
O
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
R
C
N
299
N
O
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
N
322
N
O
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
C
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
UK
Embo Rep.
1469-221X
10
466
10.1038/EMBOR.2009.55
19373254
Molecular Discrimination of Structurally Equivalent Lys 63-Linked and Linear Polyubiquitin Chains.
2009
10.2210/pdb2jf5/pdb
pdb_00002jf5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2006-10-09
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.8726
1.0
ID23-2
ESRF
0.8726
SYNCHROTRON
ESRF BEAMLINE ID23-2
ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76
8576.831
UBIQUITIN
2
man
polymer
112.411
CADMIUM ION
2
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
58.933
COBALT (II) ION
2
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
78
nat
water
DI-UBIQUITIN, LYS63-LINKED
no
no
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
562
ESCHERICHIA COLI
ROSETTA2 PLYSS
PET17B
1
2.83
56
NONE
7.5
12 % (W/V) PEG 3350, 5 MM NICKEL CHLORIDE, 5 MM COBALT CHLORIDE, 5 MM CADMIUM CHLORIDE, 5 MM MAGNESIUM CHLORIDE, 0.1 M HEPES [PH 7.5]
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Advisory
Refinement description
Version format compliance
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2008-02-05
1
1
2011-07-13
1
2
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
ROTAMER STRAIN AS A DETERMINANT OF PROTEIN STRUCTURALSPECIFICITY
UBIQUITIN NMR STRUCTURE
STRUCTURE OF A NEW CRYSTAL FORM OF TETRAUBIQUITIN
STRUCTURE OF A CONJUGATING ENZYME-UBIQUITIN THIOLESTERCOMPLEX
STRUCTURE OF RECOMBINANT HUMAN UBIQUITIN IN AOT REVERSEMICELLES
SOLUTION STRUCTURE OF A DIMERIC N-TERMINAL FRAGMENT OF HUMAN UBIQUITIN
CRYSTAL STRUCTURE OF A UBP-FAMILY DEUBIQUITINATING ENZYMEIN ISOLATION AND IN COMPLEX WITH UBIQUITIN ALDEHYDE
SYNTHETIC UBIQUITIN WITH FLUORO-LEU AT 50 AND 67
UBIQUITIN RECOGNITION BY NPL4 ZINC-FINGERS
TSG101(UEV) DOMAIN IN COMPLEX WITH UBIQUITIN
CRYSTAL STRUCTURE OF A MULTIPLE HYDROPHOBIC CORE MUTANT OFUBIQUITIN
TETRAUBIQUITIN
UBIQUITIN
UBIQUITIN
CRYSTAL STRUCTURE OF UCHL3-UBVME COMPLEX
SIMULTANEOUS DETERMINATION OF PROTEIN STRUCTURE AND DYNAMICS
SOLUTION STRUCTURE OF S5A UIM-1/UBIQUITIN COMPLEX
SOLUTION STRUCTURE OF S5A UIM-2/UBIQUITIN COMPLEX
SOLUTION STRUCTURE OF THE HUMAN MMS2- UBIQUITIN COMPLEX
STRUCTURE OF USP14 BOUND TO UBQUITIN ALDEHYDE
NMR STRUCTURE OF LYS48-LINKED DI-UBIQUITIN USING CHEMICAL SHIFT PERTURBATION DATA TOGETHER WITH RDCS AND 15N-RELAXATION DATA
X-RAY CRYSTAL STRUCTURE OF A CHEMICALLY SYNTHESIZED [D-GLN35]UBIQUITIN WITH A CUBIC SPACE GROUP
X-RAY CRYSTAL STRUCTURE OF A CHEMICALLY SYNTHESIZED [D-VAL35]UBIQUITIN WITH A CUBIC SPACE GROUP
X-RAY CRYSTAL STRUCTURE OF A CHEMICALLY SYNTHESIZEDUBIQUITIN WITH A CUBIC SPACE GROUP
X-RAY CRYSTAL STRUCTURE OF A CHEMICALLY SYNTHESIZED [L-GLN35]UBIQUITIN WITH A CUBIC SPACE GROUP
SOLUTION STRUCTURE OF THE UBCH5C/UB NON- COVALENT COMPLEX
CO-CRYSTAL STRUCTURE OF ZNF UBP DOMAIN FROM THEDEUBIQUITINATING ENZYME ISOPEPTIDASE T (ISOT) IN COMPLEXWITH UBIQUITIN
CRYSTAL STRUCTURE OF THE 9-10 MOAD INSERTION MUTANT OFUBIQUITIN
CRYSTAL STRUCTURE OF THE 35-36 8 GLYCINE INSERTION MUTANTOF UBIQUITIN
CRYSTAL STRUCTURE OF THE 35-36 8 GLYCINE INSERTION MUTANTOF UBIQUITIN
CRYSTAL STRUCTURE OF THE UBIQUITIN-SPECIFIC PROTEASE ENCODED BY MURINE CYTOMEGALOVIRUS TEGUMENT PROTEIN M48 IN COMPLEX WITH A UBQUITIN-BASED SUICIDE SUBSTRATE
PDBE
Y
PDBE
2007-01-26
REL
REL
CD
CADMIUM ION
MG
MAGNESIUM ION
CO
COBALT (II) ION
CL
CHLORIDE ION
HOH
water
1UBQ
PDB ENTRY 1UBQ
PDB
experimental model
CD
1076
2
CD
CD
1076
A
MG
1078
3
MG
MG
1078
A
CD
1077
2
CD
CD
1077
B
CO
1079
4
CO
CO
1079
B
CL
1080
5
CL
CL
1080
B
CO
1081
4
CO
CO
1081
B
HOH
2001
6
HOH
HOH
2001
A
HOH
2002
6
HOH
HOH
2002
A
HOH
2003
6
HOH
HOH
2003
A
HOH
2004
6
HOH
HOH
2004
A
HOH
2005
6
HOH
HOH
2005
A
HOH
2006
6
HOH
HOH
2006
A
HOH
2007
6
HOH
HOH
2007
A
HOH
2008
6
HOH
HOH
2008
A
HOH
2009
6
HOH
HOH
2009
A
HOH
2010
6
HOH
HOH
2010
A
HOH
2011
6
HOH
HOH
2011
A
HOH
2012
6
HOH
HOH
2012
A
HOH
2013
6
HOH
HOH
2013
A
HOH
2014
6
HOH
HOH
2014
A
HOH
2015
6
HOH
HOH
2015
A
HOH
2016
6
HOH
HOH
2016
A
HOH
2017
6
HOH
HOH
2017
A
HOH
2018
6
HOH
HOH
2018
A
HOH
2019
6
HOH
HOH
2019
A
HOH
2020
6
HOH
HOH
2020
A
HOH
2021
6
HOH
HOH
2021
A
HOH
2022
6
HOH
HOH
2022
A
HOH
2023
6
HOH
HOH
2023
A
HOH
2024
6
HOH
HOH
2024
A
HOH
2025
6
HOH
HOH
2025
A
HOH
2026
6
HOH
HOH
2026
A
HOH
2027
6
HOH
HOH
2027
A
HOH
2028
6
HOH
HOH
2028
A
HOH
2029
6
HOH
HOH
2029
A
HOH
2030
6
HOH
HOH
2030
A
HOH
2031
6
HOH
HOH
2031
A
HOH
2001
6
HOH
HOH
2001
B
HOH
2002
6
HOH
HOH
2002
B
HOH
2003
6
HOH
HOH
2003
B
HOH
2004
6
HOH
HOH
2004
B
HOH
2005
6
HOH
HOH
2005
B
HOH
2006
6
HOH
HOH
2006
B
HOH
2007
6
HOH
HOH
2007
B
HOH
2008
6
HOH
HOH
2008
B
HOH
2009
6
HOH
HOH
2009
B
HOH
2010
6
HOH
HOH
2010
B
HOH
2011
6
HOH
HOH
2011
B
HOH
2012
6
HOH
HOH
2012
B
HOH
2013
6
HOH
HOH
2013
B
HOH
2014
6
HOH
HOH
2014
B
HOH
2015
6
HOH
HOH
2015
B
HOH
2016
6
HOH
HOH
2016
B
HOH
2017
6
HOH
HOH
2017
B
HOH
2018
6
HOH
HOH
2018
B
HOH
2019
6
HOH
HOH
2019
B
HOH
2020
6
HOH
HOH
2020
B
HOH
2021
6
HOH
HOH
2021
B
HOH
2022
6
HOH
HOH
2022
B
HOH
2023
6
HOH
HOH
2023
B
HOH
2024
6
HOH
HOH
2024
B
HOH
2025
6
HOH
HOH
2025
B
HOH
2026
6
HOH
HOH
2026
B
HOH
2027
6
HOH
HOH
2027
B
HOH
2028
6
HOH
HOH
2028
B
HOH
2029
6
HOH
HOH
2029
B
HOH
2030
6
HOH
HOH
2030
B
HOH
2031
6
HOH
HOH
2031
B
HOH
2032
6
HOH
HOH
2032
B
HOH
2033
6
HOH
HOH
2033
B
HOH
2034
6
HOH
HOH
2034
B
HOH
2035
6
HOH
HOH
2035
B
HOH
2036
6
HOH
HOH
2036
B
HOH
2037
6
HOH
HOH
2037
B
HOH
2038
6
HOH
HOH
2038
B
HOH
2039
6
HOH
HOH
2039
B
HOH
2040
6
HOH
HOH
2040
B
HOH
2041
6
HOH
HOH
2041
B
HOH
2042
6
HOH
HOH
2042
B
HOH
2043
6
HOH
HOH
2043
B
HOH
2044
6
HOH
HOH
2044
B
HOH
2045
6
HOH
HOH
2045
B
HOH
2046
6
HOH
HOH
2046
B
HOH
2047
6
HOH
HOH
2047
B
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
VAL
5
n
5
VAL
5
A
LYS
6
n
6
LYS
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
LYS
11
n
11
LYS
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
GLU
16
n
16
GLU
16
A
VAL
17
n
17
VAL
17
A
GLU
18
n
18
GLU
18
A
PRO
19
n
19
PRO
19
A
SER
20
n
20
SER
20
A
ASP
21
n
21
ASP
21
A
THR
22
n
22
THR
22
A
ILE
23
n
23
ILE
23
A
GLU
24
n
24
GLU
24
A
ASN
25
n
25
ASN
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
LYS
29
n
29
LYS
29
A
ILE
30
n
30
ILE
30
A
GLN
31
n
31
GLN
31
A
ASP
32
n
32
ASP
32
A
LYS
33
n
33
LYS
33
A
GLU
34
n
34
GLU
34
A
GLY
35
n
35
GLY
35
A
ILE
36
n
36
ILE
36
A
PRO
37
n
37
PRO
37
A
PRO
38
n
38
PRO
38
A
ASP
39
n
39
ASP
39
A
GLN
40
n
40
GLN
40
A
GLN
41
n
41
GLN
41
A
ARG
42
n
42
ARG
42
A
LEU
43
n
43
LEU
43
A
ILE
44
n
44
ILE
44
A
PHE
45
n
45
PHE
45
A
ALA
46
n
46
ALA
46
A
GLY
47
n
47
GLY
47
A
LYS
48
n
48
LYS
48
A
GLN
49
n
49
GLN
49
A
LEU
50
n
50
LEU
50
A
GLU
51
n
51
GLU
51
A
ASP
52
n
52
ASP
52
A
GLY
53
n
53
GLY
53
A
ARG
54
n
54
ARG
54
A
THR
55
n
55
THR
55
A
LEU
56
n
56
LEU
56
A
SER
57
n
57
SER
57
A
ASP
58
n
58
ASP
58
A
TYR
59
n
59
TYR
59
A
ASN
60
n
60
ASN
60
A
ILE
61
n
61
ILE
61
A
GLN
62
n
62
GLN
62
A
LYS
63
n
63
LYS
63
A
GLU
64
n
64
GLU
64
A
SER
65
n
65
SER
65
A
THR
66
n
66
THR
66
A
LEU
67
n
67
LEU
67
A
HIS
68
n
68
HIS
68
A
LEU
69
n
69
LEU
69
A
VAL
70
n
70
VAL
70
A
LEU
71
n
71
LEU
71
A
ARG
72
n
72
ARG
72
A
LEU
73
n
73
LEU
73
A
ARG
74
n
74
ARG
74
A
GLY
75
n
75
GLY
75
A
n
76
76
A
MET
1
n
1
MET
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
PHE
4
n
4
PHE
4
B
VAL
5
n
5
VAL
5
B
LYS
6
n
6
LYS
6
B
THR
7
n
7
THR
7
B
LEU
8
n
8
LEU
8
B
THR
9
n
9
THR
9
B
GLY
10
n
10
GLY
10
B
LYS
11
n
11
LYS
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
THR
14
n
14
THR
14
B
LEU
15
n
15
LEU
15
B
GLU
16
n
16
GLU
16
B
VAL
17
n
17
VAL
17
B
GLU
18
n
18
GLU
18
B
PRO
19
n
19
PRO
19
B
SER
20
n
20
SER
20
B
ASP
21
n
21
ASP
21
B
THR
22
n
22
THR
22
B
ILE
23
n
23
ILE
23
B
GLU
24
n
24
GLU
24
B
ASN
25
n
25
ASN
25
B
VAL
26
n
26
VAL
26
B
LYS
27
n
27
LYS
27
B
ALA
28
n
28
ALA
28
B
LYS
29
n
29
LYS
29
B
ILE
30
n
30
ILE
30
B
GLN
31
n
31
GLN
31
B
ASP
32
n
32
ASP
32
B
LYS
33
n
33
LYS
33
B
GLU
34
n
34
GLU
34
B
GLY
35
n
35
GLY
35
B
ILE
36
n
36
ILE
36
B
PRO
37
n
37
PRO
37
B
PRO
38
n
38
PRO
38
B
ASP
39
n
39
ASP
39
B
GLN
40
n
40
GLN
40
B
GLN
41
n
41
GLN
41
B
ARG
42
n
42
ARG
42
B
LEU
43
n
43
LEU
43
B
ILE
44
n
44
ILE
44
B
PHE
45
n
45
PHE
45
B
ALA
46
n
46
ALA
46
B
GLY
47
n
47
GLY
47
B
LYS
48
n
48
LYS
48
B
GLN
49
n
49
GLN
49
B
LEU
50
n
50
LEU
50
B
GLU
51
n
51
GLU
51
B
ASP
52
n
52
ASP
52
B
GLY
53
n
53
GLY
53
B
ARG
54
n
54
ARG
54
B
THR
55
n
55
THR
55
B
LEU
56
n
56
LEU
56
B
SER
57
n
57
SER
57
B
ASP
58
n
58
ASP
58
B
TYR
59
n
59
TYR
59
B
ASN
60
n
60
ASN
60
B
ILE
61
n
61
ILE
61
B
GLN
62
n
62
GLN
62
B
LYS
63
n
63
LYS
63
B
GLU
64
n
64
GLU
64
B
SER
65
n
65
SER
65
B
THR
66
n
66
THR
66
B
LEU
67
n
67
LEU
67
B
HIS
68
n
68
HIS
68
B
LEU
69
n
69
LEU
69
B
VAL
70
n
70
VAL
70
B
LEU
71
n
71
LEU
71
B
ARG
72
n
72
ARG
72
B
LEU
73
n
73
LEU
73
B
ARG
74
n
74
ARG
74
B
GLY
75
n
75
GLY
75
B
GLY
76
n
76
GLY
76
B
6.1560
2.4955
2.2819
8.1923
0.4569
2.6521
0.1544
-0.0981
-0.6355
-0.3481
0.1542
-0.5479
0.1225
-0.0570
-0.3087
-0.2522
-0.0928
0.0305
-0.2524
-0.0305
-0.1952
refined
63.7127
81.3647
32.5458
X-RAY DIFFRACTION
6.8428
-0.0214
0.8271
4.4467
-0.3700
4.2658
-0.0068
-0.1890
-0.1400
-0.3220
0.1050
0.3767
0.1703
-0.3784
-0.0982
-0.2492
-0.0389
-0.0918
-0.2303
0.0329
-0.2334
refined
92.3340
105.8642
43.9216
X-RAY DIFFRACTION
A
1
A
75
X-RAY DIFFRACTION
1
B
1
B
76
X-RAY DIFFRACTION
2
software_defined_assembly
PQS
2
dimeric
220
0.6
10810
A
MET
1
A
N
MET
1
1_555
A
MG
1078
D
MG
MG
1_555
A
GLU
16
A
OE2
GLU
16
1_555
93.5
A
MET
1
A
N
MET
1
1_555
A
MG
1078
D
MG
MG
1_555
A
HOH
2005
I
O
HOH
1_555
121.1
A
GLU
16
A
OE2
GLU
16
1_555
A
MG
1078
D
MG
MG
1_555
A
HOH
2005
I
O
HOH
1_555
100.2
A
GLU
18
A
OE2
GLU
18
1_555
A
CD
1076
A
C
CD
CD
1_555
A
GLU
18
A
OE2
GLU
18
12_664
117.8
A
GLU
18
A
OE2
GLU
18
1_555
A
CD
1076
A
C
CD
CD
1_555
A
ASP
21
A
OD1
ASP
21
1_555
130.1
A
GLU
18
A
OE2
GLU
18
12_664
A
CD
1076
A
C
CD
CD
1_555
A
ASP
21
A
OD1
ASP
21
1_555
101.4
A
GLU
18
A
OE1
GLU
18
12_664
A
CD
1076
B
C
CD
CD
1_555
A
ASP
21
A
OD1
ASP
21
1_555
83.1
A
GLU
18
A
OE1
GLU
18
12_664
A
CD
1076
B
C
CD
CD
1_555
A
ASP
21
A
OD2
ASP
21
1_555
130.7
A
ASP
21
A
OD1
ASP
21
1_555
A
CD
1076
B
C
CD
CD
1_555
A
ASP
21
A
OD2
ASP
21
1_555
53.6
B
MET
1
B
N
MET
1
1_555
B
CO
1079
F
CO
CO
1_555
B
GLU
16
B
OE2
GLU
16
1_555
90.5
B
MET
1
B
N
MET
1
1_555
B
CO
1079
F
CO
CO
1_555
B
ASP
32
B
OD2
ASP
32
7_674
90.8
B
GLU
16
B
OE2
GLU
16
1_555
B
CO
1079
F
CO
CO
1_555
B
ASP
32
B
OD2
ASP
32
7_674
93.2
B
MET
1
B
N
MET
1
1_555
B
CO
1079
F
CO
CO
1_555
B
HOH
2047
J
O
HOH
1_555
110.6
B
GLU
16
B
OE2
GLU
16
1_555
B
CO
1079
F
CO
CO
1_555
B
HOH
2047
J
O
HOH
1_555
140.7
B
ASP
32
B
OD2
ASP
32
7_674
B
CO
1079
F
CO
CO
1_555
B
HOH
2047
J
O
HOH
1_555
118.1
B
GLU
18
B
OE1
GLU
18
1_555
B
CD
1077
B
E
CD
CD
1_555
B
GLU
18
B
OE1
GLU
18
10_756
124.9
B
GLU
18
B
OE1
GLU
18
1_555
B
CD
1077
B
E
CD
CD
1_555
B
ASP
21
B
OD1
ASP
21
1_555
121.4
B
GLU
18
B
OE1
GLU
18
10_756
B
CD
1077
B
E
CD
CD
1_555
B
ASP
21
B
OD1
ASP
21
1_555
102.1
B
GLU
18
B
OE2
GLU
18
10_756
B
CD
1077
A
E
CD
CD
1_555
B
GLU
18
B
OE1
GLU
18
10_756
49.5
B
GLU
18
B
OE2
GLU
18
10_756
B
CD
1077
A
E
CD
CD
1_555
B
ASP
21
B
OD1
ASP
21
1_555
95.5
B
GLU
18
B
OE1
GLU
18
10_756
B
CD
1077
A
E
CD
CD
1_555
B
ASP
21
B
OD1
ASP
21
1_555
93.9
B
GLU
18
B
OE2
GLU
18
10_756
B
CD
1077
A
E
CD
CD
1_555
B
ASP
21
B
OD2
ASP
21
1_555
126.8
B
GLU
18
B
OE1
GLU
18
10_756
B
CD
1077
A
E
CD
CD
1_555
B
ASP
21
B
OD2
ASP
21
1_555
146.4
B
ASP
21
B
OD1
ASP
21
1_555
B
CD
1077
A
E
CD
CD
1_555
B
ASP
21
B
OD2
ASP
21
1_555
52.6
B
GLU
18
B
OE2
GLU
18
10_756
B
CD
1077
A
E
CD
CD
1_555
B
LYS
29
B
NZ
LYS
29
1_555
75.3
B
GLU
18
B
OE1
GLU
18
10_756
B
CD
1077
A
E
CD
CD
1_555
B
LYS
29
B
NZ
LYS
29
1_555
114.9
B
ASP
21
B
OD1
ASP
21
1_555
B
CD
1077
A
E
CD
CD
1_555
B
LYS
29
B
NZ
LYS
29
1_555
126.9
B
ASP
21
B
OD2
ASP
21
1_555
B
CD
1077
A
E
CD
CD
1_555
B
LYS
29
B
NZ
LYS
29
1_555
91.3
B
GLU
18
B
OE2
GLU
18
10_756
B
CD
1077
A
E
CD
CD
1_555
B
CL
1080
G
CL
CL
1_555
126.6
B
GLU
18
B
OE1
GLU
18
10_756
B
CD
1077
A
E
CD
CD
1_555
B
CL
1080
G
CL
CL
1_555
110.9
B
ASP
21
B
OD1
ASP
21
1_555
B
CD
1077
A
E
CD
CD
1_555
B
CL
1080
G
CL
CL
1_555
137.8
B
ASP
21
B
OD2
ASP
21
1_555
B
CD
1077
A
E
CD
CD
1_555
B
CL
1080
G
CL
CL
1_555
96.1
B
LYS
29
B
NZ
LYS
29
1_555
B
CD
1077
A
E
CD
CD
1_555
B
CL
1080
G
CL
CL
1_555
73.4
B
GLU
64
B
OE1
GLU
64
1_555
B
CO
1081
H
CO
CO
1_555
B
HIS
68
B
NE2
HIS
68
24_676
97.7
B
GLU
64
B
OE1
GLU
64
1_555
B
CO
1081
H
CO
CO
1_555
B
HOH
2039
J
O
HOH
1_555
68.3
B
HIS
68
B
NE2
HIS
68
24_676
B
CO
1081
H
CO
CO
1_555
B
HOH
2039
J
O
HOH
1_555
63.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
15
A
N
LEU
15
A
O
ILE
3
A
O
ILE
3
A
N
LYS
6
A
N
LYS
6
A
O
LEU
67
A
O
LEU
67
A
N
VAL
70
A
N
VAL
70
A
O
ARG
42
A
O
ARG
42
A
N
PHE
45
A
N
PHE
45
A
O
LYS
48
A
O
LYS
48
B
N
LEU
15
B
N
LEU
15
B
O
ILE
3
B
O
ILE
3
B
N
LYS
6
B
N
LYS
6
B
O
LEU
67
B
O
LEU
67
B
N
VAL
70
B
N
VAL
70
B
O
ARG
42
B
O
ARG
42
B
N
PHE
45
B
N
PHE
45
B
O
LYS
48
B
O
LYS
48
1
A
HOH
2006
I
HOH
1
A
GLY
76
A
GLY
76
1
Y
1
A
B
NZ
C
LYS
GLY
63
76
1.29
1
B
B
OE2
O
GLU
HOH
64
2039
1.92
1
B
B
O
O
HOH
HOH
2008
2028
2.13
1
B
B
C
O
GLY
GLY
76
76
0.159
0.016
1.232
1.391
N
42.28
0.944
0.919
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.DISORDERED RESIDUES HAVE BEEN REFINED WITH OCCU 0.01. GLY76 IN MOLA IS NOT MODELLED AN ISOPEPTIDE LINKAGE BETWEEN LYS63 (MOLA) AND GLY76 CONNECTS THE TWO UBIQUITIN MOIETIES
0.250
0.206
0.208
1.95
50.00
756
14211
5.100
99.8
7.283
0.119
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.157
0.151
0.80
0.80
1.40
PDB ENTRY 1UBQ
MAXIMUM LIKELIHOOD
MASK
1.95
50.00
78
1282
6
0
1198
0.016
0.022
1240
1.513
1.998
1671
6.116
5.000
157
36.390
25.439
57
17.114
15.000
258
19.802
15.000
9
0.105
0.200
198
0.006
0.020
897
0.216
0.200
471
0.309
0.200
807
0.232
0.200
76
0.207
0.200
69
0.191
0.200
15
0.887
1.500
789
1.432
2.000
1243
2.226
3.000
492
3.713
4.500
424
0.3320
0.2770
2.00
45
1014
20
1.95
50.00
2JF5
15023
2.0
0.11
1
11.40
5.8
99.9
0.59
1.95
2.06
2.20
1
5.3
100.0
refinement
REFMAC
5.2.0019
data reduction
MOSFLM
data scaling
SCALA
phasing
PHASER
crystal structure of Lys63-linked di-ubiquitin
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
4
N
N
5
N
N
4
N
N
6
N
N
6
N
N
A
THR
22
A
THR
22
HELX_P
A
GLY
35
A
GLY
35
1
1
14
A
PRO
37
A
PRO
37
HELX_P
A
ASP
39
A
ASP
39
5
2
3
A
LEU
56
A
LEU
56
HELX_P
A
ASN
60
A
ASN
60
5
3
5
B
THR
22
B
THR
22
HELX_P
B
GLY
35
B
GLY
35
1
4
14
B
PRO
37
B
PRO
37
HELX_P
B
ASP
39
B
ASP
39
5
5
3
B
LEU
56
B
LEU
56
HELX_P
B
ASN
60
B
ASN
60
5
6
5
metalc
1.706
A
MET
1
A
N
MET
1
1_555
A
MG
1078
D
MG
MG
1_555
metalc
2.069
A
GLU
16
A
OE2
GLU
16
1_555
A
MG
1078
D
MG
MG
1_555
metalc
2.101
A
A
GLU
18
A
OE2
GLU
18
1_555
A
CD
1076
C
CD
CD
1_555
metalc
2.597
A
A
GLU
18
A
OE2
GLU
18
12_664
A
CD
1076
C
CD
CD
1_555
metalc
2.400
B
A
GLU
18
A
OE1
GLU
18
12_664
A
CD
1076
C
CD
CD
1_555
metalc
2.165
A
A
ASP
21
A
OD1
ASP
21
1_555
A
CD
1076
C
CD
CD
1_555
metalc
2.174
B
A
ASP
21
A
OD1
ASP
21
1_555
A
CD
1076
C
CD
CD
1_555
metalc
2.640
B
A
ASP
21
A
OD2
ASP
21
1_555
A
CD
1076
C
CD
CD
1_555
metalc
1.881
A
MG
1078
D
MG
MG
1_555
A
HOH
2005
I
O
HOH
1_555
metalc
1.864
B
MET
1
B
N
MET
1
1_555
B
CO
1079
F
CO
CO
1_555
metalc
2.364
B
GLU
16
B
OE2
GLU
16
1_555
B
CO
1079
F
CO
CO
1_555
metalc
2.344
B
B
GLU
18
B
OE1
GLU
18
1_555
B
CD
1077
E
CD
CD
1_555
metalc
2.502
B
B
GLU
18
B
OE1
GLU
18
10_756
B
CD
1077
E
CD
CD
1_555
metalc
2.234
A
B
GLU
18
B
OE2
GLU
18
10_756
B
CD
1077
E
CD
CD
1_555
metalc
2.847
A
B
GLU
18
B
OE1
GLU
18
10_756
B
CD
1077
E
CD
CD
1_555
metalc
2.337
A
B
ASP
21
B
OD1
ASP
21
1_555
B
CD
1077
E
CD
CD
1_555
metalc
2.574
A
B
ASP
21
B
OD2
ASP
21
1_555
B
CD
1077
E
CD
CD
1_555
metalc
2.391
B
B
ASP
21
B
OD1
ASP
21
1_555
B
CD
1077
E
CD
CD
1_555
metalc
2.877
A
B
LYS
29
B
NZ
LYS
29
1_555
B
CD
1077
E
CD
CD
1_555
metalc
2.263
B
ASP
32
B
OD2
ASP
32
7_674
B
CO
1079
F
CO
CO
1_555
metalc
2.416
B
GLU
64
B
OE1
GLU
64
1_555
B
CO
1081
H
CO
CO
1_555
metalc
2.274
B
HIS
68
B
NE2
HIS
68
24_676
B
CO
1081
H
CO
CO
1_555
metalc
2.709
A
B
CD
1077
E
CD
CD
1_555
B
CL
1080
G
CL
CL
1_555
metalc
2.326
B
CO
1079
F
CO
CO
1_555
B
HOH
2047
J
O
HOH
1_555
metalc
1.980
B
CO
1081
H
CO
CO
1_555
B
HOH
2039
J
O
HOH
1_555
SIGNALING PROTEIN
LYS6, LYS63, NF-KB, UBIQUITIN, NUCLEAR PROTEIN, SIGNAL TRANSDUCTION, SIGNALING PROTEIN
UBIQ_HUMAN
UNP
1
P62988
1
76
2JF5
1
76
P62988
A
1
1
76
1
76
2JF5
1
76
P62988
B
1
1
76
5
5
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
12
A
THR
12
A
GLU
16
A
GLU
16
A
GLN
2
A
GLN
2
A
LYS
6
A
LYS
6
A
THR
66
A
THR
66
A
LEU
71
A
LEU
71
A
GLN
41
A
GLN
41
A
PHE
45
A
PHE
45
A
LYS
48
A
LYS
48
A
GLN
49
A
GLN
49
B
THR
12
B
THR
12
B
GLU
16
B
GLU
16
B
GLN
2
B
GLN
2
B
LYS
6
B
LYS
6
B
THR
66
B
THR
66
B
LEU
71
B
LEU
71
B
GLN
41
B
GLN
41
B
PHE
45
B
PHE
45
B
LYS
48
B
LYS
48
B
GLN
49
B
GLN
49
BINDING SITE FOR RESIDUE CD B 1077
B
CD
1077
Software
5
BINDING SITE FOR RESIDUE CD A 1076
A
CD
1076
Software
4
BINDING SITE FOR RESIDUE CO B 1079
B
CO
1079
Software
4
BINDING SITE FOR RESIDUE CL B 1080
B
CL
1080
Software
3
BINDING SITE FOR RESIDUE MG A 1078
A
MG
1078
Software
4
BINDING SITE FOR RESIDUE CO B 1081
B
CO
1081
Software
4
B
GLU
18
B
GLU
18
5
10_756
B
GLU
18
B
GLU
18
5
1_555
B
ASP
21
B
ASP
21
5
1_555
B
LYS
29
B
LYS
29
5
1_555
B
CL
1080
G
CL
5
1_555
A
GLU
18
A
GLU
18
4
12_664
A
GLU
18
A
GLU
18
4
1_555
A
ASP
21
A
ASP
21
4
1_555
A
LYS
29
A
LYS
29
4
1_555
B
MET
1
B
MET
1
4
1_555
B
GLU
16
B
GLU
16
4
1_555
B
ASP
32
B
ASP
32
4
7_674
B
HOH
2047
J
HOH
4
1_555
B
GLU
18
B
GLU
18
3
1_555
B
LYS
29
B
LYS
29
3
1_555
B
CD
1077
E
CD
3
1_555
A
MET
1
A
MET
1
4
1_555
A
GLU
16
A
GLU
16
4
1_555
A
ASP
32
A
ASP
32
4
6_566
A
HOH
2005
I
HOH
4
1_555
B
GLU
64
B
GLU
64
4
1_555
B
HIS
68
B
HIS
68
4
24_676
B
HOH
2039
J
HOH
4
1_555
B
HOH
2043
J
HOH
4
24_676
212
P 43 3 2