1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Zhou, C.J. Hu, H.Y. Lin, D.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N O N 21 N O N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N N N 31 N C N 32 N C N 33 N O N 34 N O N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N N N 41 S C N 42 N C N 43 N O N 44 N C N 45 N C N 46 N C N 47 N C N 48 N O N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N N N 63 S C N 64 N C N 65 N O N 66 N C N 67 N C N 68 N C N 69 N C N 70 N N N 71 N O N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N N N 88 S C N 89 N C N 90 N O N 91 N C N 92 N C N 93 N S N 94 N C N 95 N O N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 S C N 109 N C N 110 N O N 111 N C Y 112 N C Y 113 N C Y 114 N C Y 115 N C Y 116 N C Y 117 N C N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 N C N 135 N O N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 N C N 149 N C N 150 N C N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N doub N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing Y 112 N doub Y 113 N sing Y 114 N sing N 115 N sing Y 116 N doub N 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N doub N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing US Faseb J. FAJOEC 2074 0892-6638 24 196 205 10.1096/fj.09-133082 19762560 Interaction with synphilin-1 promotes inclusion formation of alpha-synuclein: mechanistic insights and pathological implication. 2010 10.2210/pdb2jn5/pdb pdb_00002jn5 1 SINGLE WAVELENGTH M 1 1.0 1357.704 Alpha-synuclein residues 1-12 1 syn polymer Non-A beta component of AD amyloid, Non-A4 component of amyloid precursor, NACP no no MDVFMKGLSKAK MDVFMKGLSKAK A polypeptide(L) n n n n n n n n n n n n database_2 pdbx_database_status pdbx_entity_src_syn pdbx_nmr_sample_details pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list database_2 pdbx_database_status chem_comp_atom chem_comp_bond pdbx_database_status repository Initial release Version format compliance Data collection Database references Derived calculations Experimental preparation Other Source and taxonomy Database references Other Data collection Other 1 0 2008-01-22 1 1 2011-07-13 1 2 2020-02-05 1 3 2023-06-14 1 4 2023-12-20 _pdbx_database_status.status_code_cs _pdbx_entity_src_syn.details _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.organism_scientific _pdbx_nmr_sample_details.contents _pdbx_nmr_software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_database_status.deposit_site RCSB Y RCSB 2006-12-28 REL REL REL REL 9606 Human Homo sapiens sample 123 89 1 11 22 structures with the lowest energy 250 10 0.016 0.002 2D 1H-1H TOCSY 2D 1H-1H NOESY 1 mM 20 mM 50 mM 0.1 mM 6.5 ambient 298 K torsion angle dynamics 1 lowest energy 1 mM entity, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 mM Synphilin-1, 90% H2O/10% D2O 90% H2O/10% D2O Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRDraw 2.3 Goddard peak picking Sparky 3.110 Goddard chemical shift assignment Sparky 3.110 Linge, O'Donoghue and Nilges data analysis ARIA 2.0 Linge, O'Donoghue and Nilges structure solution ARIA 2.0 Linge, O'Donoghue and Nilges refinement ARIA 2.0 600 Varian INOVA Varian INOVA MET 1 n 1 MET 1 A ASP 2 n 2 ASP 2 A VAL 3 n 3 VAL 3 A PHE 4 n 4 PHE 4 A MET 5 n 5 MET 5 A LYS 6 n 6 LYS 6 A GLY 7 n 7 GLY 7 A LEU 8 n 8 LEU 8 A SER 9 n 9 SER 9 A LYS 10 n 10 LYS 10 A ALA 11 n 11 ALA 11 A LYS 12 n 12 LYS 12 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ASP 2 -151.30 81.11 1 A VAL 3 -152.78 -17.58 1 A LEU 8 -153.89 -41.45 1 A SER 9 -172.64 -35.23 1 A LYS 10 48.81 78.69 2 A VAL 3 -159.29 -22.25 2 A LEU 8 -157.87 -34.79 2 A SER 9 -172.82 -40.64 2 A LYS 10 52.48 78.01 3 A VAL 3 -152.35 -19.57 3 A LEU 8 -160.52 -38.08 3 A SER 9 -172.72 -45.21 4 A VAL 3 -157.75 -18.30 4 A LEU 8 -155.64 -39.49 4 A SER 9 -165.94 -43.47 4 A LYS 10 52.66 82.08 5 A VAL 3 -151.39 -18.71 5 A LEU 8 -154.56 -43.25 5 A SER 9 -163.61 -39.46 5 A LYS 10 52.64 79.85 6 A ASP 2 -150.70 73.53 6 A VAL 3 -140.42 -19.45 6 A LEU 8 -148.32 -44.29 6 A SER 9 -164.90 -35.57 6 A LYS 10 51.41 83.24 7 A VAL 3 -159.16 -20.49 7 A LEU 8 -156.60 -41.64 7 A SER 9 -160.89 -41.59 7 A LYS 10 51.89 74.95 8 A ASP 2 -150.97 87.96 8 A VAL 3 -157.39 -20.11 8 A LEU 8 -145.22 -42.10 8 A SER 9 -178.35 -34.24 8 A LYS 10 53.88 88.09 9 A ASP 2 -150.66 83.63 9 A VAL 3 -151.39 -20.66 9 A LEU 8 -161.58 -47.33 9 A SER 9 -164.65 -40.04 9 A LYS 10 53.11 83.50 10 A VAL 3 -148.60 -17.19 10 A LEU 8 -159.42 -35.33 10 A SER 9 -161.00 -48.37 Solution Structure of a Dodecapeptide from Alpha-Synuclein Bound with Synphilin-1 1 N N LIPID BINDING PROTEIN, PROTEIN FIBRIL Alpha-Synuclein, N-terminus, dodecapeptide, Synphilin-1, LIPID BINDING PROTEIN, PROTEIN FIBRIL SYUA_HUMAN UNP 1 1 P37840 MDVFMKGLSKAK 1 12 2JN5 1 12 P37840 A 1 1 12