1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zhou, C.J.
Hu, H.Y.
Lin, D.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
O
N
21
N
O
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
N
N
31
N
C
N
32
N
C
N
33
N
O
N
34
N
O
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
N
N
41
S
C
N
42
N
C
N
43
N
O
N
44
N
C
N
45
N
C
N
46
N
C
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
N
N
63
S
C
N
64
N
C
N
65
N
O
N
66
N
C
N
67
N
C
N
68
N
C
N
69
N
C
N
70
N
N
N
71
N
O
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
N
N
88
S
C
N
89
N
C
N
90
N
O
N
91
N
C
N
92
N
C
N
93
N
S
N
94
N
C
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
N
N
108
S
C
N
109
N
C
N
110
N
O
N
111
N
C
Y
112
N
C
Y
113
N
C
Y
114
N
C
Y
115
N
C
Y
116
N
C
Y
117
N
C
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
N
C
N
135
N
O
N
136
N
O
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
doub
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
doub
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
Y
112
N
doub
Y
113
N
sing
Y
114
N
sing
N
115
N
sing
Y
116
N
doub
N
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
US
Faseb J.
FAJOEC
2074
0892-6638
24
196
205
10.1096/fj.09-133082
19762560
Interaction with synphilin-1 promotes inclusion formation of alpha-synuclein: mechanistic insights and pathological implication.
2010
10.2210/pdb2jn5/pdb
pdb_00002jn5
1
SINGLE WAVELENGTH
M
1
1.0
1357.704
Alpha-synuclein
residues 1-12
1
syn
polymer
Non-A beta component of AD amyloid, Non-A4 component of amyloid precursor, NACP
no
no
MDVFMKGLSKAK
MDVFMKGLSKAK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_database_status
pdbx_entity_src_syn
pdbx_nmr_sample_details
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
database_2
pdbx_database_status
chem_comp_atom
chem_comp_bond
pdbx_database_status
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Experimental preparation
Other
Source and taxonomy
Database references
Other
Data collection
Other
1
0
2008-01-22
1
1
2011-07-13
1
2
2020-02-05
1
3
2023-06-14
1
4
2023-12-20
_pdbx_database_status.status_code_cs
_pdbx_entity_src_syn.details
_pdbx_entity_src_syn.ncbi_taxonomy_id
_pdbx_entity_src_syn.organism_common_name
_pdbx_entity_src_syn.organism_scientific
_pdbx_nmr_sample_details.contents
_pdbx_nmr_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_database_status.deposit_site
RCSB
Y
RCSB
2006-12-28
REL
REL
REL
REL
9606
Human
Homo sapiens
sample
123
89
1
11
22
structures with the lowest energy
250
10
0.016
0.002
2D 1H-1H TOCSY
2D 1H-1H NOESY
1
mM
20
mM
50
mM
0.1
mM
6.5
ambient
298
K
torsion angle dynamics
1
lowest energy
1 mM entity, 20 mM sodium phosphate, 50 mM sodium chloride, 0.1 mM Synphilin-1, 90% H2O/10% D2O
90% H2O/10% D2O
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRDraw
2.3
Goddard
peak picking
Sparky
3.110
Goddard
chemical shift assignment
Sparky
3.110
Linge, O'Donoghue and Nilges
data analysis
ARIA
2.0
Linge, O'Donoghue and Nilges
structure solution
ARIA
2.0
Linge, O'Donoghue and Nilges
refinement
ARIA
2.0
600
Varian
INOVA
Varian INOVA
MET
1
n
1
MET
1
A
ASP
2
n
2
ASP
2
A
VAL
3
n
3
VAL
3
A
PHE
4
n
4
PHE
4
A
MET
5
n
5
MET
5
A
LYS
6
n
6
LYS
6
A
GLY
7
n
7
GLY
7
A
LEU
8
n
8
LEU
8
A
SER
9
n
9
SER
9
A
LYS
10
n
10
LYS
10
A
ALA
11
n
11
ALA
11
A
LYS
12
n
12
LYS
12
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ASP
2
-151.30
81.11
1
A
VAL
3
-152.78
-17.58
1
A
LEU
8
-153.89
-41.45
1
A
SER
9
-172.64
-35.23
1
A
LYS
10
48.81
78.69
2
A
VAL
3
-159.29
-22.25
2
A
LEU
8
-157.87
-34.79
2
A
SER
9
-172.82
-40.64
2
A
LYS
10
52.48
78.01
3
A
VAL
3
-152.35
-19.57
3
A
LEU
8
-160.52
-38.08
3
A
SER
9
-172.72
-45.21
4
A
VAL
3
-157.75
-18.30
4
A
LEU
8
-155.64
-39.49
4
A
SER
9
-165.94
-43.47
4
A
LYS
10
52.66
82.08
5
A
VAL
3
-151.39
-18.71
5
A
LEU
8
-154.56
-43.25
5
A
SER
9
-163.61
-39.46
5
A
LYS
10
52.64
79.85
6
A
ASP
2
-150.70
73.53
6
A
VAL
3
-140.42
-19.45
6
A
LEU
8
-148.32
-44.29
6
A
SER
9
-164.90
-35.57
6
A
LYS
10
51.41
83.24
7
A
VAL
3
-159.16
-20.49
7
A
LEU
8
-156.60
-41.64
7
A
SER
9
-160.89
-41.59
7
A
LYS
10
51.89
74.95
8
A
ASP
2
-150.97
87.96
8
A
VAL
3
-157.39
-20.11
8
A
LEU
8
-145.22
-42.10
8
A
SER
9
-178.35
-34.24
8
A
LYS
10
53.88
88.09
9
A
ASP
2
-150.66
83.63
9
A
VAL
3
-151.39
-20.66
9
A
LEU
8
-161.58
-47.33
9
A
SER
9
-164.65
-40.04
9
A
LYS
10
53.11
83.50
10
A
VAL
3
-148.60
-17.19
10
A
LEU
8
-159.42
-35.33
10
A
SER
9
-161.00
-48.37
Solution Structure of a Dodecapeptide from Alpha-Synuclein Bound with Synphilin-1
1
N
N
LIPID BINDING PROTEIN, PROTEIN FIBRIL
Alpha-Synuclein, N-terminus, dodecapeptide, Synphilin-1, LIPID BINDING PROTEIN, PROTEIN FIBRIL
SYUA_HUMAN
UNP
1
1
P37840
MDVFMKGLSKAK
1
12
2JN5
1
12
P37840
A
1
1
12