1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Larson, C.
Stiffler, M.
Li, P.
Rosen, M.
MacBeath, G.
Ranganathan, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
S
C
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
C
N
219
N
S
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
O
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
R
C
N
292
N
O
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
N
315
N
O
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
Y
233
N
doub
Y
234
N
sing
Y
235
N
sing
N
236
N
sing
Y
237
N
doub
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
To be Published
0353
C60-1, a PDZ domain designed using statistical coupling analysis
10.2210/pdb2jre/pdb
pdb_00002jre
11589.026
C60-1 PDZ domain peptide
1
syn
polymer
no
no
GSHGYSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGM
AQSDVVEVLRNAGNPVRLLLIRRLPLLE
GSHGYSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGM
AQSDVVEVLRNAGNPVRLLLIRRLPLLE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
chem_comp_atom
chem_comp_bond
pdbx_database_status
repository
Initial release
Version format compliance
Database references
Derived calculations
Data collection
Other
1
0
2008-07-01
1
1
2011-07-13
1
2
2022-03-09
1
3
2023-12-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.deposit_site
RCSB
Y
RCSB
2007-06-25
REL
REL
The peptide is a synthetic construct designed using statistical coupling analysis and expressed in Escherichia coli BL21 cells using the pHis8.3 vector.
sample
1718
675
430
152
378
64
51
51
structures with the lowest energy
50
25
3D 1H-15N NOESY
3D 1H-13C NOESY
2D 1H-15N HSQC
2D 1H-13C HSQC
3D CBCA(CO)NH
3D HNCACB
3D HNCO
3D C(CO)NH
3D H(CCO)NH
3D HCCH-TOCSY
2D 1H-15N HSQC
1
mM
[U-100% 13C; U-100% 15N]
50
mM
25
mM
0.02
%
1
mM
[U-100% 13C; U-100% 15N]
50
mM
25
mM
0.02
%
1
mM
[U-10% 13C]
50
mM
25
mM
0.02
%
6.5
288
K
simulated annealing
1
lowest energy
1 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide, 90% H2O/10% D2O
90% H2O/10% D2O
1 mM [U-100% 13C; U-100% 15N] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide, 100% D2O
100% D2O
1 mM [U-10% 13C] protein, 50 mM sodium chloride, 25 mM sodium phosphate, 0.02 % sodium azide, 90% H2O/10% D2O
90% H2O/10% D2O
Linge, O'Donoghue and Nilges
structure solution
ARIA
1.2
Brunger, Adams, Clore, Gros, Nilges and Read
structure solution
CNS
1.1
Johnson, One Moon Scientific
peak picking
NMRView
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Brunger, Adams, Clore, Gros, Nilges and Read
refinement
CNS
1.1
600
Varian
UNITY
Varian Unity
500
Varian
UNITY
Varian Unity
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
HIS
3
n
3
HIS
3
A
GLY
4
n
4
GLY
4
A
TYR
5
n
5
TYR
5
A
SER
6
n
6
SER
6
A
ASP
7
n
7
ASP
7
A
ALA
8
n
8
ALA
8
A
SER
9
n
9
SER
9
A
GLY
10
n
10
GLY
10
A
PHE
11
n
11
PHE
11
A
SER
12
n
12
SER
12
A
LEU
13
n
13
LEU
13
A
TYR
14
n
14
TYR
14
A
SER
15
n
15
SER
15
A
VAL
16
n
16
VAL
16
A
GLU
17
n
17
GLU
17
A
LEU
18
n
18
LEU
18
A
PHE
19
n
19
PHE
19
A
ARG
20
n
20
ARG
20
A
GLU
21
n
21
GLU
21
A
LYS
22
n
22
LYS
22
A
ASP
23
n
23
ASP
23
A
THR
24
n
24
THR
24
A
SER
25
n
25
SER
25
A
SER
26
n
26
SER
26
A
LEU
27
n
27
LEU
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
SER
30
n
30
SER
30
A
ILE
31
n
31
ILE
31
A
SER
32
n
32
SER
32
A
GLY
33
n
33
GLY
33
A
MET
34
n
34
MET
34
A
ARG
35
n
35
ARG
35
A
ASP
36
n
36
ASP
36
A
GLN
37
n
37
GLN
37
A
SER
38
n
38
SER
38
A
THR
39
n
39
THR
39
A
THR
40
n
40
THR
40
A
GLY
41
n
41
GLY
41
A
GLU
42
n
42
GLU
42
A
ALA
43
n
43
ALA
43
A
THR
44
n
44
THR
44
A
GLY
45
n
45
GLY
45
A
ILE
46
n
46
ILE
46
A
TYR
47
n
47
TYR
47
A
VAL
48
n
48
VAL
48
A
LYS
49
n
49
LYS
49
A
SER
50
n
50
SER
50
A
LEU
51
n
51
LEU
51
A
ILE
52
n
52
ILE
52
A
PRO
53
n
53
PRO
53
A
GLY
54
n
54
GLY
54
A
SER
55
n
55
SER
55
A
ALA
56
n
56
ALA
56
A
ALA
57
n
57
ALA
57
A
ALA
58
n
58
ALA
58
A
LEU
59
n
59
LEU
59
A
ASP
60
n
60
ASP
60
A
GLY
61
n
61
GLY
61
A
ARG
62
n
62
ARG
62
A
ILE
63
n
63
ILE
63
A
GLU
64
n
64
GLU
64
A
PRO
65
n
65
PRO
65
A
ASN
66
n
66
ASN
66
A
ASP
67
n
67
ASP
67
A
LYS
68
n
68
LYS
68
A
ILE
69
n
69
ILE
69
A
LEU
70
n
70
LEU
70
A
ARG
71
n
71
ARG
71
A
VAL
72
n
72
VAL
72
A
ASP
73
n
73
ASP
73
A
ASP
74
n
74
ASP
74
A
VAL
75
n
75
VAL
75
A
ASN
76
n
76
ASN
76
A
VAL
77
n
77
VAL
77
A
GLN
78
n
78
GLN
78
A
GLY
79
n
79
GLY
79
A
MET
80
n
80
MET
80
A
ALA
81
n
81
ALA
81
A
GLN
82
n
82
GLN
82
A
SER
83
n
83
SER
83
A
ASP
84
n
84
ASP
84
A
VAL
85
n
85
VAL
85
A
VAL
86
n
86
VAL
86
A
GLU
87
n
87
GLU
87
A
VAL
88
n
88
VAL
88
A
LEU
89
n
89
LEU
89
A
ARG
90
n
90
ARG
90
A
ASN
91
n
91
ASN
91
A
ALA
92
n
92
ALA
92
A
GLY
93
n
93
GLY
93
A
ASN
94
n
94
ASN
94
A
PRO
95
n
95
PRO
95
A
VAL
96
n
96
VAL
96
A
ARG
97
n
97
ARG
97
A
LEU
98
n
98
LEU
98
A
LEU
99
n
99
LEU
99
A
LEU
100
n
100
LEU
100
A
ILE
101
n
101
ILE
101
A
ARG
102
n
102
ARG
102
A
ARG
103
n
103
ARG
103
A
LEU
104
n
104
LEU
104
A
PRO
105
n
105
PRO
105
A
LEU
106
n
106
LEU
106
A
LEU
107
n
107
LEU
107
A
GLU
108
n
108
GLU
108
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
16
A
N
VAL
16
A
O
LEU
98
A
O
LEU
98
A
O
ILE
101
A
O
ILE
101
A
N
LYS
68
A
N
LYS
68
A
O
ASP
67
A
O
ASP
67
A
N
VAL
48
A
N
VAL
48
A
O
LYS
49
A
O
LYS
49
A
N
SER
30
A
N
SER
30
A
N
VAL
16
A
N
VAL
16
A
O
LEU
98
A
O
LEU
98
A
O
ILE
101
A
O
ILE
101
A
N
LYS
68
A
N
LYS
68
A
N
VAL
72
A
N
VAL
72
A
O
VAL
75
A
O
VAL
75
2
A
A
HH
HD23
TYR
LEU
14
104
1.23
5
A
A
HH
HD23
TYR
LEU
14
104
1.34
1
A
ASP
7
58.14
86.42
1
A
THR
40
-154.84
23.42
1
A
THR
44
51.39
-169.66
1
A
ASN
66
57.88
74.54
1
A
ASP
73
-47.55
108.97
1
A
ALA
92
-53.21
-83.00
1
A
PRO
95
-57.07
105.10
2
A
SER
2
-103.86
-65.81
2
A
ASP
7
57.72
76.49
2
A
ASP
23
-95.23
40.40
2
A
SER
25
57.76
19.10
2
A
SER
38
-165.72
102.44
2
A
THR
40
-159.24
19.41
2
A
GLU
42
57.17
90.38
2
A
PRO
65
-74.10
44.84
2
A
ASN
66
-167.75
69.50
2
A
LEU
70
-124.35
-67.11
2
A
ASP
73
-51.07
108.81
2
A
ASP
74
59.39
14.21
2
A
GLN
78
-90.72
33.60
2
A
ALA
92
-54.62
-86.64
2
A
PRO
95
-58.24
107.23
3
A
SER
2
-147.54
-53.35
3
A
ASP
7
57.00
82.87
3
A
GLU
21
-165.87
-32.83
3
A
THR
44
51.55
-172.08
3
A
ASN
66
-174.59
72.09
3
A
LEU
70
-121.56
-59.22
3
A
ASP
73
-47.28
108.62
3
A
GLN
78
-92.28
42.40
3
A
ALA
92
-52.33
-85.03
3
A
PRO
95
-58.91
104.10
4
A
HIS
3
-148.89
-24.91
4
A
ASP
7
54.29
78.74
4
A
ASP
23
-87.37
34.09
4
A
SER
25
58.32
17.62
4
A
THR
40
-161.16
8.97
4
A
ALA
43
-161.80
61.57
4
A
LEU
70
-107.34
-60.19
4
A
GLN
78
-95.41
44.85
4
A
ALA
92
-58.06
-86.49
4
A
PRO
95
-56.28
104.93
5
A
ASP
23
-84.46
39.72
5
A
SER
25
56.83
17.39
5
A
ASP
36
-103.53
-65.91
5
A
GLN
37
60.44
77.87
5
A
SER
38
58.18
86.49
5
A
THR
44
50.85
-167.25
5
A
PRO
65
-55.00
174.73
5
A
LEU
70
-102.37
-65.69
5
A
ASP
73
-48.63
109.28
5
A
ALA
92
-57.43
-84.51
5
A
PRO
95
-60.79
93.02
6
A
HIS
3
-168.59
99.56
6
A
ASP
23
-84.05
34.13
6
A
SER
25
58.35
15.92
6
A
GLN
37
62.74
-175.46
6
A
ALA
43
-150.62
38.53
6
A
PRO
65
-47.62
167.18
6
A
ASN
66
63.97
60.78
6
A
ASP
73
-49.76
108.66
6
A
ALA
92
-53.03
-81.61
6
A
PRO
95
-61.94
98.38
7
A
ASP
7
57.23
85.15
7
A
PHE
11
-58.12
102.54
7
A
GLU
21
-169.39
26.45
7
A
THR
40
-150.99
2.05
7
A
PRO
65
-58.46
171.89
7
A
LEU
70
-107.29
-64.38
7
A
ASP
73
-47.24
109.21
7
A
ALA
92
-56.97
-87.73
7
A
PRO
95
-59.15
90.82
8
A
HIS
3
55.30
94.13
8
A
TYR
5
-99.45
55.88
8
A
SER
6
-68.84
95.11
8
A
ASP
7
56.65
85.59
8
A
GLU
21
-155.69
-34.49
8
A
ASP
23
-93.96
33.98
8
A
THR
40
-161.94
7.43
8
A
ALA
43
-136.75
-158.88
8
A
THR
44
-59.61
175.79
8
A
PRO
65
-57.20
172.18
8
A
ASP
73
-47.67
108.81
8
A
GLN
78
-96.71
38.31
8
A
ALA
92
-59.68
-89.62
8
A
PRO
95
-59.18
97.53
9
A
HIS
3
56.02
83.57
9
A
ASP
23
-85.96
47.59
9
A
GLU
42
-68.47
92.27
9
A
LEU
70
-111.31
-73.75
9
A
ASP
73
-44.25
109.00
9
A
ALA
92
-48.90
-85.73
9
A
PRO
95
-65.13
92.26
10
A
ASP
7
57.94
71.52
10
A
ASP
23
-93.47
30.04
10
A
GLN
37
-100.21
69.53
10
A
PRO
65
-53.41
175.52
10
A
LEU
70
-123.22
-61.59
10
A
ASP
73
-46.82
108.44
10
A
GLN
78
-96.23
34.12
10
A
ALA
92
-53.19
-83.53
10
A
PRO
95
-61.59
98.27
11
A
ASP
23
-83.37
37.40
11
A
SER
25
59.54
15.72
11
A
ASP
36
-146.99
11.87
11
A
SER
38
-127.88
-158.85
11
A
PRO
65
-55.34
-178.57
11
A
LEU
70
-122.54
-66.13
11
A
ASP
73
-46.81
107.98
11
A
ASP
74
49.12
22.43
11
A
ALA
92
-54.94
-85.62
11
A
PRO
95
-60.47
89.91
12
A
SER
2
-90.32
-67.02
12
A
TYR
5
-101.98
71.69
12
A
ASP
7
55.83
85.80
12
A
PHE
11
-61.93
95.28
12
A
GLU
21
-160.33
20.72
12
A
SER
25
58.34
16.65
12
A
THR
39
49.31
-165.25
12
A
PRO
65
-48.68
157.80
12
A
GLN
78
-97.53
33.95
12
A
ALA
92
-54.02
-71.66
12
A
PRO
95
-47.79
100.09
13
A
TYR
5
55.19
73.14
13
A
SER
25
59.26
19.89
13
A
GLN
37
57.63
88.31
13
A
SER
38
-68.68
85.96
13
A
THR
44
49.51
-167.18
13
A
ILE
46
58.97
95.61
13
A
PRO
53
-57.56
94.81
13
A
PRO
65
-78.30
38.19
13
A
ASN
66
-164.93
64.14
13
A
ASP
73
-44.30
108.74
13
A
ALA
92
-57.50
-86.22
13
A
PRO
95
-66.45
81.61
14
A
HIS
3
-96.40
-64.46
14
A
SER
6
-106.13
-169.32
14
A
ASP
7
-54.17
103.53
14
A
SER
9
56.86
19.11
14
A
ASP
23
-95.63
51.91
14
A
SER
38
-154.77
78.83
14
A
THR
40
-168.88
14.79
14
A
GLU
42
58.36
-177.56
14
A
LEU
70
-93.25
-63.79
14
A
ALA
92
-62.44
-85.27
14
A
PRO
95
-56.76
103.54
15
A
ASP
7
-55.49
97.63
15
A
ASP
23
-83.37
37.54
15
A
SER
38
53.94
71.46
15
A
ALA
43
-166.55
56.20
15
A
LEU
70
-113.03
-72.17
15
A
ASP
73
-47.86
108.30
15
A
ASP
74
58.69
6.68
15
A
GLN
78
-94.32
42.25
15
A
ALA
92
-49.76
-80.26
16
A
SER
2
-154.59
-72.85
16
A
HIS
3
55.53
82.68
16
A
ASP
7
56.40
81.64
16
A
PHE
11
-50.65
103.98
16
A
GLU
21
-150.93
13.76
16
A
ASP
23
-90.62
57.92
16
A
SER
25
49.71
26.84
16
A
SER
38
-59.94
103.23
16
A
GLU
42
58.98
-178.73
16
A
ALA
43
-163.95
117.26
16
A
THR
44
50.20
-167.41
16
A
ASN
66
61.13
82.98
16
A
LEU
70
-101.36
-61.51
16
A
GLN
78
-86.77
31.62
16
A
ALA
92
-55.49
-83.74
16
A
PRO
95
-62.33
96.50
17
A
ASP
7
-179.53
89.51
17
A
ALA
8
-160.23
102.58
17
A
GLU
21
-157.75
64.19
17
A
LYS
22
-145.64
34.52
17
A
SER
25
49.62
24.84
17
A
ILE
29
-58.93
108.56
17
A
ASP
36
-149.67
-68.03
17
A
SER
38
-65.52
95.62
17
A
ALA
43
-168.53
39.03
17
A
PRO
65
-54.66
174.38
17
A
LEU
70
-104.12
-63.85
17
A
ASP
73
-48.26
108.53
17
A
ASP
74
58.48
6.99
17
A
ALA
92
-50.18
-78.72
17
A
PRO
95
-65.90
93.23
18
A
ASP
7
55.04
88.07
18
A
PHE
11
-62.00
98.16
18
A
GLU
21
-141.61
-36.25
18
A
SER
25
58.00
18.56
18
A
ARG
35
-150.48
77.49
18
A
ALA
43
-163.71
80.43
18
A
PRO
65
-59.27
178.05
18
A
LEU
70
-100.99
-65.44
18
A
ASP
74
47.32
19.40
18
A
GLN
78
-89.94
41.74
18
A
ALA
92
-50.48
-84.18
18
A
PRO
95
-61.43
92.22
19
A
TYR
5
-119.79
62.53
19
A
ASP
7
54.29
74.19
19
A
SER
9
-178.11
32.01
19
A
ALA
43
-161.82
40.51
19
A
PRO
65
-47.27
165.64
19
A
ASP
73
-47.69
108.07
19
A
ASP
74
52.30
19.03
19
A
VAL
77
-143.07
49.98
19
A
GLN
78
-143.30
21.33
19
A
ALA
92
-52.15
-83.84
20
A
SER
2
60.08
-178.99
20
A
TYR
5
-68.02
91.35
20
A
GLU
21
-147.63
11.25
20
A
SER
25
59.61
14.88
20
A
GLN
37
-95.54
48.29
20
A
SER
38
54.21
77.73
20
A
GLU
42
57.30
88.53
20
A
PRO
65
-78.81
36.95
20
A
ASN
66
-169.29
75.93
20
A
ASP
73
-41.60
108.11
20
A
ASP
74
56.66
2.76
20
A
ALA
92
-54.33
-81.77
20
A
PRO
95
-58.25
104.20
21
A
HIS
3
-145.75
-4.42
21
A
ASP
7
56.54
79.88
21
A
ASP
23
-86.70
42.98
21
A
ALA
43
-163.93
-168.92
21
A
THR
44
48.31
-163.00
21
A
PRO
65
-54.91
175.64
21
A
LEU
70
-105.53
-68.75
21
A
GLN
78
-97.51
41.46
21
A
ALA
92
-58.38
-84.85
22
A
ASP
7
58.93
97.80
22
A
ASP
23
-83.32
34.65
22
A
THR
40
-164.76
9.52
22
A
THR
44
52.84
-171.92
22
A
GLN
78
-95.26
31.03
22
A
ALA
92
-54.53
-88.63
22
A
PRO
95
-62.39
97.45
23
A
SER
2
-151.39
-54.42
23
A
ASP
7
55.34
85.84
23
A
PHE
11
-56.27
106.46
23
A
GLU
21
-160.63
26.15
23
A
THR
40
-146.05
-3.08
23
A
THR
44
52.13
-171.92
23
A
ARG
62
-61.31
0.75
23
A
PRO
65
-73.61
28.06
23
A
ASN
66
-163.03
49.44
23
A
ASP
73
-53.49
108.79
23
A
ALA
92
-58.20
-86.85
23
A
PRO
95
-61.47
99.38
24
A
HIS
3
-165.12
88.48
24
A
ASP
7
58.36
75.82
24
A
GLU
21
-168.07
-33.06
24
A
ASP
23
-84.77
49.29
24
A
SER
25
56.41
18.04
24
A
ARG
35
-160.43
65.22
24
A
ASP
36
-66.99
-177.34
24
A
SER
38
51.18
-164.97
24
A
ALA
43
57.06
88.70
24
A
ASP
73
-49.15
108.66
24
A
GLN
78
-94.25
31.64
24
A
ALA
92
-58.03
-87.24
24
A
PRO
95
-62.86
89.53
25
A
HIS
3
-164.69
100.64
25
A
GLU
21
-113.51
-70.26
25
A
ARG
35
-144.04
42.12
25
A
SER
38
60.33
-178.87
25
A
THR
39
53.56
-172.74
25
A
PRO
65
-57.08
176.97
25
A
LEU
70
-114.97
-71.77
25
A
ASP
73
-46.70
108.70
25
A
ASP
74
53.41
14.52
25
A
ALA
92
-56.77
-83.51
25
A
PRO
95
-57.39
92.47
C60-1, a PDZ domain designed using statistical coupling analysis
1
N
N
A
SER
55
A
SER
55
HELX_P
A
GLY
61
A
GLY
61
1
1
7
A
ALA
81
A
ALA
81
HELX_P
A
GLY
93
A
GLY
93
1
2
13
DE NOVO PROTEIN
C60-1, PDZ, DE NOVO PROTEIN
2JRE
PDB
1
2JRE
1
108
2JRE
1
108
2JRE
A
1
1
108
5
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
12
A
SER
12
A
PHE
19
A
PHE
19
A
PRO
95
A
PRO
95
A
ARG
102
A
ARG
102
A
ASP
67
A
ASP
67
A
VAL
72
A
VAL
72
A
TYR
47
A
TYR
47
A
LEU
51
A
LEU
51
A
ILE
29
A
ILE
29
A
SER
32
A
SER
32
A
SER
12
A
SER
12
A
PHE
19
A
PHE
19
A
PRO
95
A
PRO
95
A
ARG
102
A
ARG
102
A
ASP
67
A
ASP
67
A
VAL
72
A
VAL
72
A
VAL
75
A
VAL
75
A
ASN
76
A
ASN
76