1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kuryavyi, V.V. Phan, A.T. Luu, K.N. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H13 Br N5 O7 P 426.117 n 8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking N 1 N P N 2 N O N 3 N O N 4 N O N 5 N C N 6 R C N 7 N O N 8 R C Y 9 N N Y 10 N C Y 11 N N Y 12 N C Y 13 N C N 14 N N N 15 N C N 16 N N N 17 N N N 18 N C N 19 N O N 20 N C N 21 S C N 22 N O N 23 N O N 24 N BR N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 N C N 49 R C Y 50 N N Y 51 N C Y 52 N N Y 53 N C Y 54 N C N 55 N N Y 56 N N Y 57 N C Y 58 N N Y 59 N C N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 N C N 122 R C N 123 N N N 124 N C N 125 N O N 126 N N N 127 N C N 128 N O N 129 N C N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing Y 17 N sing Y 18 N sing Y 19 N doub N 20 N sing Y 21 N sing Y 22 N doub N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N doub N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing Y 63 N sing Y 64 N sing Y 65 N doub N 66 N sing Y 67 N sing Y 68 N sing Y 69 N doub N 70 N sing Y 71 N doub N 72 N sing N 73 N sing Y 74 N sing Y 75 N doub N 76 N sing Y 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing Y 101 N sing Y 102 N sing Y 103 N doub N 104 N sing Y 105 N sing N 106 N sing Y 107 N doub N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 35 6517 6525 10.1093/nar/gkm706 17895279 Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution. 2007 10.2210/pdb2jsk/pdb pdb_00002jsk 7366.586 HUMAN TELOMERE DNA 1 syn polymer no yes (DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(BGM)(DG)(DT)(DT) (DA)(DG)(DG)(DG) TAGGGTTAGGGTTAGGGTTAGGG A polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn chem_comp_atom chem_comp_bond repository Initial release Version format compliance Data collection Database references Derived calculations Data collection 1 0 2008-07-08 1 1 2011-07-13 1 2 2022-03-16 1 3 2024-05-29 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF NA TETRAHYMENA TELOMERE DNA SOLUTION STRUCTURE HUMAN TELOMERE DNA CRYSTAL STRUCTURE IN THE PRESENCE OF K 3 REPEATS OF HUMAN TELOMERE DNA SOLUTION STRUCTURE END-MODIFIED HUMAN TELOMERE DNA CRYSTAL STRUCTURE IN THE PRESENCE OF K HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS NATURAL FORM 2 HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS FORM 2 15BRG BMRB Y RCSB 2007-07-07 REL REL back calculated data agree with experimental NOESY spectrum 100 10 1H-1H NOESY 1H-1H TOCSY 1H-31P COSY 1H-1H COSY 1H-15N JRHMQC 1H-15N HMBC 0.5 mM 70 7.0 1 atm 298 K AFTER DEPOSITION, THE MOLECULES WERE ENERGY MINIMIZED WITH THE ENERGY FUNCTION IMPLEMENTING GEOMETRICAL VALUES IN EFFECT AT RCSB SINCE JULY 31 2007. AS A RESULT, STRUCTURE STATISTICS FOR THIS ENTRY SLIGHTLY DEVIATES FROM THE PUBLISHED ONE, AS FOLLOWS (CURRENT VS PUBLISHED): NOE VIOLATIONS (>0.2) (0.3+-0.48) VS (0.10+-0.32); MAXIMUM VIOLATION (0.20+-0.00) VS (0.21+-0.07); RMSD OF VIOLATIONS (0.03+-0.02) VS (0.02+-0.00); BOND LENGTHS (0.005+-0.000) VS (0.004+-0.000); BOND ANGLES (0.70+-0.01) VS (0.93+-0.02); IMPROPERS (0.31+-0.01) VS (0.32+-0.02); PAIRWISE RMSD: ALL ATOMS (0.78+-0.29) VS (0.67+-0.22); ALL ATOMS EXCEPT T6,T7,A8 (0.57+-0.22) VS (0.53+-0.15). TORSION ANGLE DYNAMICS CARTESIAN DYNAMICS MATRIX RELAXATION 1 closest to the average 0.5-5.0 mM HUMAN TELOMERE DNA, 90% H2O/10% D2O 90% H2O/10% D2O Varian collection VNMR 6.0 Accelrys data analysis Felix 2000 Brunger, A.T. et al. refinement X-PLOR 3.851 600 Varian INOVA VARIAN INOVA 800 Bruker AVANCE BRUKER AVANCE DT 1 n 1 DT 1 A DA 2 n 2 DA 2 A DG 3 n 3 DG 3 A DG 4 n 4 DG 4 A DG 5 n 5 DG 5 A DT 6 n 6 DT 6 A DT 7 n 7 DT 7 A DA 8 n 8 DA 8 A DG 9 n 9 DG 9 A DG 10 n 10 DG 10 A DG 11 n 11 DG 11 A DT 12 n 12 DT 12 A DT 13 n 13 DT 13 A DA 14 n 14 DA 14 A DG 15 n 15 DG 15 A BGM 16 n 16 BGM 16 A DG 17 n 17 DG 17 A DT 18 n 18 DT 18 A DT 19 n 19 DT 19 A DA 20 n 20 DA 20 A DG 21 n 21 DG 21 A DG 22 n 22 DG 22 A DG 23 n 23 DG 23 A author_defined_assembly 1 monomeric A BGM 16 A BGM 16 DG 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 Monomeric Human Telomere DNA Tetraplex with 3+1 Strand Fold Topology, Two Edgewise Loops and Double-Chain Reversal Loop, 16 G Form 1, NMR, 10 Structures 1 N N covale 1.620 both A DG 15 A O3' DG 15 1_555 A BGM 16 A P BGM 16 1_555 covale 1.612 both A BGM 16 A O3' BGM 16 1_555 A DG 17 A P DG 17 1_555 hydrog WATSON-CRICK A DT 1 A N3 DT 1 1_555 A DA 20 A N1 DA 20 1_555 hydrog WATSON-CRICK A DT 1 A O4 DT 1 1_555 A DA 20 A N6 DA 20 1_555 hydrog REVERSED HOOGSTEEN A DA 2 A N6 DA 2 1_555 A DT 19 A O2 DT 19 1_555 hydrog REVERSED HOOGSTEEN A DA 2 A N7 DA 2 1_555 A DT 19 A N3 DT 19 1_555 hydrog DA-DA MISPAIR A DA 2 A N6 DA 2 1_555 A DA 20 A N3 DA 20 1_555 hydrog TYPE_6_PAIR A DG 3 A N7 DG 3 1_555 A DG 9 A N2 DG 9 1_555 hydrog TYPE_6_PAIR A DG 3 A O6 DG 3 1_555 A DG 9 A N1 DG 9 1_555 hydrog TYPE_6_PAIR A DG 3 A N1 DG 3 1_555 A DG 21 A O6 DG 21 1_555 hydrog TYPE_6_PAIR A DG 3 A N2 DG 3 1_555 A DG 21 A N7 DG 21 1_555 hydrog TYPE_6_PAIR A DG 4 A N1 DG 4 1_555 A DG 10 A O6 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N2 DG 4 1_555 A DG 10 A N7 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N7 DG 4 1_555 A DG 22 A N2 DG 22 1_555 hydrog TYPE_6_PAIR A DG 4 A O6 DG 4 1_555 A DG 22 A N1 DG 22 1_555 hydrog TYPE_6_PAIR A DG 5 A N1 DG 5 1_555 A DG 11 A O6 DG 11 1_555 hydrog TYPE_6_PAIR A DG 5 A N2 DG 5 1_555 A DG 11 A N7 DG 11 1_555 hydrog TYPE_6_PAIR A DG 5 A N7 DG 5 1_555 A DG 23 A N2 DG 23 1_555 hydrog TYPE_6_PAIR A DG 5 A O6 DG 5 1_555 A DG 23 A N1 DG 23 1_555 hydrog TYPE_6_PAIR A DG 9 A N7 DG 9 1_555 A DG 17 A N2 DG 17 1_555 hydrog TYPE_6_PAIR A DG 9 A O6 DG 9 1_555 A DG 17 A N1 DG 17 1_555 hydrog TYPE_6_PAIR A DG 10 A N1 DG 10 1_555 A BGM 16 A O6 BGM 16 1_555 hydrog TYPE_6_PAIR A DG 10 A N2 DG 10 1_555 A BGM 16 A N7 BGM 16 1_555 hydrog TYPE_6_PAIR A DG 11 A N1 DG 11 1_555 A DG 15 A O6 DG 15 1_555 hydrog TYPE_6_PAIR A DG 11 A N2 DG 11 1_555 A DG 15 A N7 DG 15 1_555 hydrog HOOGSTEEN A DT 12 A N3 DT 12 1_555 A DA 14 A N7 DA 14 1_555 hydrog HOOGSTEEN A DT 12 A O4 DT 12 1_555 A DA 14 A N6 DA 14 1_555 hydrog TYPE_6_PAIR A DG 15 A N1 DG 15 1_555 A DG 23 A O6 DG 23 1_555 hydrog TYPE_6_PAIR A DG 15 A N2 DG 15 1_555 A DG 23 A N7 DG 23 1_555 hydrog TYPE_6_PAIR A BGM 16 A N1 BGM 16 1_555 A DG 22 A O6 DG 22 1_555 hydrog TYPE_6_PAIR A BGM 16 A N2 BGM 16 1_555 A DG 22 A N7 DG 22 1_555 hydrog TYPE_6_PAIR A DG 17 A N7 DG 17 1_555 A DG 21 A N2 DG 21 1_555 hydrog TYPE_6_PAIR A DG 17 A O6 DG 17 1_555 A DG 21 A N1 DG 21 1_555 DNA G-TETRAD, 3+1 STRAND FOLDING, EDGEWISE, DOUBLE-CHAIN REVERSAL LOOPS, Form 1 16BrG, 10 STRUCTURES, DNA 2JSK PDB 1 2JSK 1 23 2JSK 1 23 2JSK A 1 1 23 1 P 1