1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kuryavyi, V.V.
Phan, A.T.
Luu, K.N.
Patel, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H13 Br N5 O7 P
426.117
n
8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
C
N
6
R
C
N
7
N
O
N
8
R
C
Y
9
N
N
Y
10
N
C
Y
11
N
N
Y
12
N
C
Y
13
N
C
N
14
N
N
N
15
N
C
N
16
N
N
N
17
N
N
N
18
N
C
N
19
N
O
N
20
N
C
N
21
S
C
N
22
N
O
N
23
N
O
N
24
N
BR
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
N
C
N
49
R
C
Y
50
N
N
Y
51
N
C
Y
52
N
N
Y
53
N
C
Y
54
N
C
N
55
N
N
Y
56
N
N
Y
57
N
C
Y
58
N
N
Y
59
N
C
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
N
C
N
122
R
C
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
N
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
Y
17
N
sing
Y
18
N
sing
Y
19
N
doub
N
20
N
sing
Y
21
N
sing
Y
22
N
doub
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
doub
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
Y
63
N
sing
Y
64
N
sing
Y
65
N
doub
N
66
N
sing
Y
67
N
sing
Y
68
N
sing
Y
69
N
doub
N
70
N
sing
Y
71
N
doub
N
72
N
sing
N
73
N
sing
Y
74
N
sing
Y
75
N
doub
N
76
N
sing
Y
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
Y
101
N
sing
Y
102
N
sing
Y
103
N
doub
N
104
N
sing
Y
105
N
sing
N
106
N
sing
Y
107
N
doub
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
35
6517
6525
10.1093/nar/gkm706
17895279
Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution.
2007
10.2210/pdb2jsk/pdb
pdb_00002jsk
7366.586
HUMAN TELOMERE DNA
1
syn
polymer
no
yes
(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(BGM)(DG)(DT)(DT)
(DA)(DG)(DG)(DG)
TAGGGTTAGGGTTAGGGTTAGGG
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Data collection
1
0
2008-07-08
1
1
2011-07-13
1
2
2022-03-16
1
3
2024-05-29
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.pdbx_leaving_atom_flag
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF NA
TETRAHYMENA TELOMERE DNA SOLUTION STRUCTURE
HUMAN TELOMERE DNA CRYSTAL STRUCTURE IN THE PRESENCE OF K
3 REPEATS OF HUMAN TELOMERE DNA SOLUTION STRUCTURE
END-MODIFIED HUMAN TELOMERE DNA CRYSTAL STRUCTURE IN THE PRESENCE OF K
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS NATURAL FORM 2
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS FORM 2 15BRG
BMRB
Y
RCSB
2007-07-07
REL
REL
back calculated data agree with experimental NOESY spectrum
100
10
1H-1H NOESY
1H-1H TOCSY
1H-31P COSY
1H-1H COSY
1H-15N JRHMQC
1H-15N HMBC
0.5
mM
70
7.0
1
atm
298
K
AFTER DEPOSITION, THE MOLECULES WERE ENERGY MINIMIZED WITH THE ENERGY FUNCTION IMPLEMENTING GEOMETRICAL VALUES IN EFFECT AT RCSB SINCE JULY 31 2007. AS A RESULT, STRUCTURE STATISTICS FOR THIS ENTRY SLIGHTLY DEVIATES FROM THE PUBLISHED ONE, AS FOLLOWS (CURRENT VS PUBLISHED): NOE VIOLATIONS (>0.2) (0.3+-0.48) VS (0.10+-0.32); MAXIMUM VIOLATION (0.20+-0.00) VS (0.21+-0.07); RMSD OF VIOLATIONS (0.03+-0.02) VS (0.02+-0.00); BOND LENGTHS (0.005+-0.000) VS (0.004+-0.000); BOND ANGLES (0.70+-0.01) VS (0.93+-0.02); IMPROPERS (0.31+-0.01) VS (0.32+-0.02); PAIRWISE RMSD: ALL ATOMS (0.78+-0.29) VS (0.67+-0.22); ALL ATOMS EXCEPT T6,T7,A8 (0.57+-0.22) VS (0.53+-0.15).
TORSION ANGLE DYNAMICS CARTESIAN DYNAMICS MATRIX RELAXATION
1
closest to the average
0.5-5.0 mM HUMAN TELOMERE DNA, 90% H2O/10% D2O
90% H2O/10% D2O
Varian
collection
VNMR
6.0
Accelrys
data analysis
Felix
2000
Brunger, A.T. et al.
refinement
X-PLOR
3.851
600
Varian
INOVA
VARIAN INOVA
800
Bruker
AVANCE
BRUKER AVANCE
DT
1
n
1
DT
1
A
DA
2
n
2
DA
2
A
DG
3
n
3
DG
3
A
DG
4
n
4
DG
4
A
DG
5
n
5
DG
5
A
DT
6
n
6
DT
6
A
DT
7
n
7
DT
7
A
DA
8
n
8
DA
8
A
DG
9
n
9
DG
9
A
DG
10
n
10
DG
10
A
DG
11
n
11
DG
11
A
DT
12
n
12
DT
12
A
DT
13
n
13
DT
13
A
DA
14
n
14
DA
14
A
DG
15
n
15
DG
15
A
BGM
16
n
16
BGM
16
A
DG
17
n
17
DG
17
A
DT
18
n
18
DT
18
A
DT
19
n
19
DT
19
A
DA
20
n
20
DA
20
A
DG
21
n
21
DG
21
A
DG
22
n
22
DG
22
A
DG
23
n
23
DG
23
A
author_defined_assembly
1
monomeric
A
BGM
16
A
BGM
16
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
Monomeric Human Telomere DNA Tetraplex with 3+1 Strand Fold Topology, Two Edgewise Loops and Double-Chain Reversal Loop, 16 G Form 1, NMR, 10 Structures
1
N
N
covale
1.620
both
A
DG
15
A
O3'
DG
15
1_555
A
BGM
16
A
P
BGM
16
1_555
covale
1.612
both
A
BGM
16
A
O3'
BGM
16
1_555
A
DG
17
A
P
DG
17
1_555
hydrog
WATSON-CRICK
A
DT
1
A
N3
DT
1
1_555
A
DA
20
A
N1
DA
20
1_555
hydrog
WATSON-CRICK
A
DT
1
A
O4
DT
1
1_555
A
DA
20
A
N6
DA
20
1_555
hydrog
REVERSED HOOGSTEEN
A
DA
2
A
N6
DA
2
1_555
A
DT
19
A
O2
DT
19
1_555
hydrog
REVERSED HOOGSTEEN
A
DA
2
A
N7
DA
2
1_555
A
DT
19
A
N3
DT
19
1_555
hydrog
DA-DA MISPAIR
A
DA
2
A
N6
DA
2
1_555
A
DA
20
A
N3
DA
20
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N7
DG
3
1_555
A
DG
9
A
N2
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
O6
DG
3
1_555
A
DG
9
A
N1
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N1
DG
3
1_555
A
DG
21
A
O6
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N2
DG
3
1_555
A
DG
21
A
N7
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N1
DG
4
1_555
A
DG
10
A
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N2
DG
4
1_555
A
DG
10
A
N7
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N7
DG
4
1_555
A
DG
22
A
N2
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
O6
DG
4
1_555
A
DG
22
A
N1
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N1
DG
5
1_555
A
DG
11
A
O6
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N2
DG
5
1_555
A
DG
11
A
N7
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N7
DG
5
1_555
A
DG
23
A
N2
DG
23
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
O6
DG
5
1_555
A
DG
23
A
N1
DG
23
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N7
DG
9
1_555
A
DG
17
A
N2
DG
17
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
O6
DG
9
1_555
A
DG
17
A
N1
DG
17
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N1
DG
10
1_555
A
BGM
16
A
O6
BGM
16
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N2
DG
10
1_555
A
BGM
16
A
N7
BGM
16
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
N1
DG
11
1_555
A
DG
15
A
O6
DG
15
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
N2
DG
11
1_555
A
DG
15
A
N7
DG
15
1_555
hydrog
HOOGSTEEN
A
DT
12
A
N3
DT
12
1_555
A
DA
14
A
N7
DA
14
1_555
hydrog
HOOGSTEEN
A
DT
12
A
O4
DT
12
1_555
A
DA
14
A
N6
DA
14
1_555
hydrog
TYPE_6_PAIR
A
DG
15
A
N1
DG
15
1_555
A
DG
23
A
O6
DG
23
1_555
hydrog
TYPE_6_PAIR
A
DG
15
A
N2
DG
15
1_555
A
DG
23
A
N7
DG
23
1_555
hydrog
TYPE_6_PAIR
A
BGM
16
A
N1
BGM
16
1_555
A
DG
22
A
O6
DG
22
1_555
hydrog
TYPE_6_PAIR
A
BGM
16
A
N2
BGM
16
1_555
A
DG
22
A
N7
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
17
A
N7
DG
17
1_555
A
DG
21
A
N2
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
17
A
O6
DG
17
1_555
A
DG
21
A
N1
DG
21
1_555
DNA
G-TETRAD, 3+1 STRAND FOLDING, EDGEWISE, DOUBLE-CHAIN REVERSAL LOOPS, Form 1 16BrG, 10 STRUCTURES, DNA
2JSK
PDB
1
2JSK
1
23
2JSK
1
23
2JSK
A
1
1
23
1
P 1