1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kuryavyi, V.V.
Phan, A.T.
Luu, K.N.
Patel, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
35
6517
6525
10.1093/nar/gkm706
17895279
Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution.
2007
10.2210/pdb2jsl/pdb
pdb_00002jsl
7896.076
HUMAN TELOMERE DNA
1
syn
polymer
no
no
(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)
(DG)(DG)(DG)(DT)(DT)
TAGGGTTAGGGTTAGGGTTAGGGTT
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
6.843
A
7
A
24
-135.452
A_DT7:DT24_A
1
32.027
-1.003
-0.274
4.238
19.441
6
A
5
A
23
-88.582
A_DG5:DG23_A
2
2.798
2.295
-0.481
-3.047
-5.045
6
A
16
A
22
91.028
A_DG16:DG22_A
3
-5.892
-1.617
0.041
3.606
1.854
6
A
15
A
21
89.706
A_DG15:DG21_A
4
0.190
-1.703
-0.134
-3.590
0.662
6
A
9
A
17
-92.144
A_DG9:DG17_A
5
-13.531
1.762
0.141
3.420
2.806
77.130
A
A
7
5
-1.740
A
A
24
23
2.786
-2.170
1.674
0.146
AA_DT7DG5:DG23DT24_AA
1
1.336
-1.071
77.095
0.171
-1.310
3.531
118.949
A
A
5
16
-2.748
A
A
23
22
3.535
-4.734
-1.781
2.385
AA_DG5DG16:DG22DG23_AA
2
-6.151
3.571
118.793
1.434
0.969
0.309
179.199
A
A
15
9
43.120
A
A
21
17
0.450
86.215
4.349
5.469
AA_DG15DG9:DG17DG21_AA
3
-150.899
75.472
165.171
2.722
-2.196
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
1
0
2008-07-15
1
1
2011-07-13
1
2
2022-03-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF NA CATIONS
TETRAHYMENA TELOMERE DNA SOLUTION STRUCTURE
HUMAN TELOMERE DNA CRYSTAL STRUCTURE IN THE PRESENCE OF K CATIONS
3 REPEATS OF HUMAN TELOMERE DNA SOLUTION STRUCTURE
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS 16BrG Form 1
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS FORM 2 15BRG
BMRB
Y
RCSB
2007-07-08
REL
REL
structures with the lowest energy
50
10
1H-1H NOESY
1H-1H TOCSY
1H-31P COSY
1H-1H COSY
1H-15N JRHMQC
1H-15N HMBC
0.5
mM
70
7.0
1
atm
298
K
AFTER DEPOSITION, THE MOLECULES WERE ENERGY MINIMIZED WITH THE ENERGY FUNCTION IMPLEMENTING GEOMETRICAL VALUES IN EFFECT AT RCSB SINCE JULY 31 2007. AS A RESULT, STRUCTURE STATISTICS FOR THIS ENTRY SLIGHTLY DEVIATES FROM THE PUBLISHED ONE, AS FOLLOWS (CURRENT VS PUBLISHED): NOE VIOLATIONS (0.7+-0.67) VS (0.30+-0.48); MAXIMUM VIOLATION (0.23+-0.03) VS (0.23+-0.02); RMSD OF VIOLATIONS (0.04+-0.00) VS (0.03+-0.00); BOND LENGTHS (0.005+-0.000) VS (0.004+-0.000); BOND ANGLES (0.77+-0.03) VS (0.87+-0.01); IMPROPERS (0.41+-0.02) VS (0.37+-0.02); PAIRWISE RMSD: ALL ATOMS (1.26+-0.31) VS (1.46+-0.36); ALL ATOMS EXCEPT T18, T19, A20 (0.73+-0.12) VS (0.79+-0.13).
TORSION ANGLE DYNAMICS CARTESIAN DYNAMICS MATRIX RELAXATION
1
lowest energy
0.5-5.0 mM HUMAN TELOMERE DNA, 100% D2O
100% D2O
Varian
collection
VNMR
6.0
Accelrys
data analysis
Felix
2000
Brunger, A.T. et al.
refinement
X-PLOR
3.851
600
Varian
INOVA
VARIAN INOVA
800
Bruker
AVANCE
BRUKER AVANCE
DT
1
n
1
DT
1
A
DA
2
n
2
DA
2
A
DG
3
n
3
DG
3
A
DG
4
n
4
DG
4
A
DG
5
n
5
DG
5
A
DT
6
n
6
DT
6
A
DT
7
n
7
DT
7
A
DA
8
n
8
DA
8
A
DG
9
n
9
DG
9
A
DG
10
n
10
DG
10
A
DG
11
n
11
DG
11
A
DT
12
n
12
DT
12
A
DT
13
n
13
DT
13
A
DA
14
n
14
DA
14
A
DG
15
n
15
DG
15
A
DG
16
n
16
DG
16
A
DG
17
n
17
DG
17
A
DT
18
n
18
DT
18
A
DT
19
n
19
DT
19
A
DA
20
n
20
DA
20
A
DG
21
n
21
DG
21
A
DG
22
n
22
DG
22
A
DG
23
n
23
DG
23
A
DT
24
n
24
DT
24
A
DT
25
n
25
DT
25
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
Monomeric Human Telomere DNA Tetraplex with 3+1 Strand Fold Topology, Two Edgewise Loops and Double-Chain Reversal Loop, Form 2 Natural, NMR, 10 Structures
1
N
N
hydrog
TYPE_6_PAIR
A
DG
3
A
N7
DG
3
1_555
A
DG
11
A
N2
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
O6
DG
3
1_555
A
DG
11
A
N1
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N1
DG
3
1_555
A
DG
21
A
O6
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N2
DG
3
1_555
A
DG
21
A
N7
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N1
DG
4
1_555
A
DG
10
A
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N2
DG
4
1_555
A
DG
10
A
N7
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N7
DG
4
1_555
A
DG
22
A
N2
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
O6
DG
4
1_555
A
DG
22
A
N1
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N1
DG
5
1_555
A
DG
9
A
O6
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N2
DG
5
1_555
A
DG
9
A
N7
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N7
DG
5
1_555
A
DG
23
A
N2
DG
23
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
O6
DG
5
1_555
A
DG
23
A
N1
DG
23
1_555
hydrog
DT-DT MISPAIR
A
DT
7
A
N3
DT
7
1_555
A
DT
24
A
O2
DT
24
1_555
hydrog
DA-DT PAIR
A
DA
8
A
N6
DA
8
1_555
A
DT
24
A
O4
DT
24
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N1
DG
9
1_555
A
DG
17
A
O6
DG
17
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N2
DG
9
1_555
A
DG
17
A
N7
DG
17
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N1
DG
10
1_555
A
DG
16
A
O6
DG
16
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N2
DG
10
1_555
A
DG
16
A
N7
DG
16
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
N7
DG
11
1_555
A
DG
15
A
N2
DG
15
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
O6
DG
11
1_555
A
DG
15
A
N1
DG
15
1_555
hydrog
TYPE_6_PAIR
A
DG
15
A
N7
DG
15
1_555
A
DG
21
A
N2
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
15
A
O6
DG
15
1_555
A
DG
21
A
N1
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
16
A
N1
DG
16
1_555
A
DG
22
A
O6
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
16
A
N2
DG
16
1_555
A
DG
22
A
N7
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
17
A
N1
DG
17
1_555
A
DG
23
A
O6
DG
23
1_555
hydrog
TYPE_6_PAIR
A
DG
17
A
N2
DG
17
1_555
A
DG
23
A
N7
DG
23
1_555
hydrog
DG-DT MISPAIR
A
DG
17
A
N2
DG
17
1_555
A
DT
24
A
O4
DT
24
1_555
DNA
G-TETRAD, 3+1 STRAND FOLDING, EDGEWISE, DOUBLE-CHAIN REVERSAL LOOPS, 10 STRUCTURES, Form 2 Natural, DNA
2JSL
PDB
1
2JSL
1
25
2JSL
1
25
2JSL
A
1
1
25
1
P 1