1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kuryavyi, V.V. Phan, A.T. Luu, K.N. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 35 6517 6525 10.1093/nar/gkm706 17895279 Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution. 2007 10.2210/pdb2jsl/pdb pdb_00002jsl 7896.076 HUMAN TELOMERE DNA 1 syn polymer no no (DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA) (DG)(DG)(DG)(DT)(DT) TAGGGTTAGGGTTAGGGTTAGGGTT A polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n 6.843 A 7 A 24 -135.452 A_DT7:DT24_A 1 32.027 -1.003 -0.274 4.238 19.441 6 A 5 A 23 -88.582 A_DG5:DG23_A 2 2.798 2.295 -0.481 -3.047 -5.045 6 A 16 A 22 91.028 A_DG16:DG22_A 3 -5.892 -1.617 0.041 3.606 1.854 6 A 15 A 21 89.706 A_DG15:DG21_A 4 0.190 -1.703 -0.134 -3.590 0.662 6 A 9 A 17 -92.144 A_DG9:DG17_A 5 -13.531 1.762 0.141 3.420 2.806 77.130 A A 7 5 -1.740 A A 24 23 2.786 -2.170 1.674 0.146 AA_DT7DG5:DG23DT24_AA 1 1.336 -1.071 77.095 0.171 -1.310 3.531 118.949 A A 5 16 -2.748 A A 23 22 3.535 -4.734 -1.781 2.385 AA_DG5DG16:DG22DG23_AA 2 -6.151 3.571 118.793 1.434 0.969 0.309 179.199 A A 15 9 43.120 A A 21 17 0.450 86.215 4.349 5.469 AA_DG15DG9:DG17DG21_AA 3 -150.899 75.472 165.171 2.722 -2.196 database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2008-07-15 1 1 2011-07-13 1 2 2022-03-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF NA CATIONS TETRAHYMENA TELOMERE DNA SOLUTION STRUCTURE HUMAN TELOMERE DNA CRYSTAL STRUCTURE IN THE PRESENCE OF K CATIONS 3 REPEATS OF HUMAN TELOMERE DNA SOLUTION STRUCTURE HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS 16BrG Form 1 HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS FORM 2 15BRG BMRB Y RCSB 2007-07-08 REL REL structures with the lowest energy 50 10 1H-1H NOESY 1H-1H TOCSY 1H-31P COSY 1H-1H COSY 1H-15N JRHMQC 1H-15N HMBC 0.5 mM 70 7.0 1 atm 298 K AFTER DEPOSITION, THE MOLECULES WERE ENERGY MINIMIZED WITH THE ENERGY FUNCTION IMPLEMENTING GEOMETRICAL VALUES IN EFFECT AT RCSB SINCE JULY 31 2007. AS A RESULT, STRUCTURE STATISTICS FOR THIS ENTRY SLIGHTLY DEVIATES FROM THE PUBLISHED ONE, AS FOLLOWS (CURRENT VS PUBLISHED): NOE VIOLATIONS (0.7+-0.67) VS (0.30+-0.48); MAXIMUM VIOLATION (0.23+-0.03) VS (0.23+-0.02); RMSD OF VIOLATIONS (0.04+-0.00) VS (0.03+-0.00); BOND LENGTHS (0.005+-0.000) VS (0.004+-0.000); BOND ANGLES (0.77+-0.03) VS (0.87+-0.01); IMPROPERS (0.41+-0.02) VS (0.37+-0.02); PAIRWISE RMSD: ALL ATOMS (1.26+-0.31) VS (1.46+-0.36); ALL ATOMS EXCEPT T18, T19, A20 (0.73+-0.12) VS (0.79+-0.13). TORSION ANGLE DYNAMICS CARTESIAN DYNAMICS MATRIX RELAXATION 1 lowest energy 0.5-5.0 mM HUMAN TELOMERE DNA, 100% D2O 100% D2O Varian collection VNMR 6.0 Accelrys data analysis Felix 2000 Brunger, A.T. et al. refinement X-PLOR 3.851 600 Varian INOVA VARIAN INOVA 800 Bruker AVANCE BRUKER AVANCE DT 1 n 1 DT 1 A DA 2 n 2 DA 2 A DG 3 n 3 DG 3 A DG 4 n 4 DG 4 A DG 5 n 5 DG 5 A DT 6 n 6 DT 6 A DT 7 n 7 DT 7 A DA 8 n 8 DA 8 A DG 9 n 9 DG 9 A DG 10 n 10 DG 10 A DG 11 n 11 DG 11 A DT 12 n 12 DT 12 A DT 13 n 13 DT 13 A DA 14 n 14 DA 14 A DG 15 n 15 DG 15 A DG 16 n 16 DG 16 A DG 17 n 17 DG 17 A DT 18 n 18 DT 18 A DT 19 n 19 DT 19 A DA 20 n 20 DA 20 A DG 21 n 21 DG 21 A DG 22 n 22 DG 22 A DG 23 n 23 DG 23 A DT 24 n 24 DT 24 A DT 25 n 25 DT 25 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 Monomeric Human Telomere DNA Tetraplex with 3+1 Strand Fold Topology, Two Edgewise Loops and Double-Chain Reversal Loop, Form 2 Natural, NMR, 10 Structures 1 N N hydrog TYPE_6_PAIR A DG 3 A N7 DG 3 1_555 A DG 11 A N2 DG 11 1_555 hydrog TYPE_6_PAIR A DG 3 A O6 DG 3 1_555 A DG 11 A N1 DG 11 1_555 hydrog TYPE_6_PAIR A DG 3 A N1 DG 3 1_555 A DG 21 A O6 DG 21 1_555 hydrog TYPE_6_PAIR A DG 3 A N2 DG 3 1_555 A DG 21 A N7 DG 21 1_555 hydrog TYPE_6_PAIR A DG 4 A N1 DG 4 1_555 A DG 10 A O6 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N2 DG 4 1_555 A DG 10 A N7 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N7 DG 4 1_555 A DG 22 A N2 DG 22 1_555 hydrog TYPE_6_PAIR A DG 4 A O6 DG 4 1_555 A DG 22 A N1 DG 22 1_555 hydrog TYPE_6_PAIR A DG 5 A N1 DG 5 1_555 A DG 9 A O6 DG 9 1_555 hydrog TYPE_6_PAIR A DG 5 A N2 DG 5 1_555 A DG 9 A N7 DG 9 1_555 hydrog TYPE_6_PAIR A DG 5 A N7 DG 5 1_555 A DG 23 A N2 DG 23 1_555 hydrog TYPE_6_PAIR A DG 5 A O6 DG 5 1_555 A DG 23 A N1 DG 23 1_555 hydrog DT-DT MISPAIR A DT 7 A N3 DT 7 1_555 A DT 24 A O2 DT 24 1_555 hydrog DA-DT PAIR A DA 8 A N6 DA 8 1_555 A DT 24 A O4 DT 24 1_555 hydrog TYPE_6_PAIR A DG 9 A N1 DG 9 1_555 A DG 17 A O6 DG 17 1_555 hydrog TYPE_6_PAIR A DG 9 A N2 DG 9 1_555 A DG 17 A N7 DG 17 1_555 hydrog TYPE_6_PAIR A DG 10 A N1 DG 10 1_555 A DG 16 A O6 DG 16 1_555 hydrog TYPE_6_PAIR A DG 10 A N2 DG 10 1_555 A DG 16 A N7 DG 16 1_555 hydrog TYPE_6_PAIR A DG 11 A N7 DG 11 1_555 A DG 15 A N2 DG 15 1_555 hydrog TYPE_6_PAIR A DG 11 A O6 DG 11 1_555 A DG 15 A N1 DG 15 1_555 hydrog TYPE_6_PAIR A DG 15 A N7 DG 15 1_555 A DG 21 A N2 DG 21 1_555 hydrog TYPE_6_PAIR A DG 15 A O6 DG 15 1_555 A DG 21 A N1 DG 21 1_555 hydrog TYPE_6_PAIR A DG 16 A N1 DG 16 1_555 A DG 22 A O6 DG 22 1_555 hydrog TYPE_6_PAIR A DG 16 A N2 DG 16 1_555 A DG 22 A N7 DG 22 1_555 hydrog TYPE_6_PAIR A DG 17 A N1 DG 17 1_555 A DG 23 A O6 DG 23 1_555 hydrog TYPE_6_PAIR A DG 17 A N2 DG 17 1_555 A DG 23 A N7 DG 23 1_555 hydrog DG-DT MISPAIR A DG 17 A N2 DG 17 1_555 A DT 24 A O4 DT 24 1_555 DNA G-TETRAD, 3+1 STRAND FOLDING, EDGEWISE, DOUBLE-CHAIN REVERSAL LOOPS, 10 STRUCTURES, Form 2 Natural, DNA 2JSL PDB 1 2JSL 1 25 2JSL 1 25 2JSL A 1 1 25 1 P 1