1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kuryavyi, V.V. Phan, A.T. Luu, K.N. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H13 Br N5 O7 P 426.117 n 8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 35 6517 6525 10.1093/nar/gkm706 17895279 Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution. 2007 10.2210/pdb2jsq/pdb pdb_00002jsq 7974.971 HUMAN TELOMERE DNA 1 syn polymer no yes (DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(BGM)(DG)(DG)(DT)(DT) (DA)(DG)(DG)(DG)(DT)(DT) TAGGGTTAGGGTTAGGGTTAGGGTT A polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2008-07-15 1 1 2011-07-13 1 2 2022-03-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF NA TETRAHYMENA TELOMERE DNA SOLUTION STRUCTURE HUMAN TELOMERE DNA CRYSTAL STRUCTURE IN THE PRESENCE OF K 3 REPEATS OF HUMAN TELOMERE DNA SOLUTION STRUCTURE HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS 16BrG Form 1 HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS Natural Form 2 HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS Natural Form 1 BMRB Y RCSB 2007-07-11 REL REL structures with the lowest energy 50 10 1H-1H NOESY 1H-1H TOCSY 1H-31P COSY 1H-1H COSY 1H-15N JRHMQC 1H-15N HMBC 0.5 mM 70 7.0 1 atm 298 K AFTER DEPOSITION, THE MOLECULES WERE ENERGY MINIMIZED WITH THE ENERGY FUNCTION IMPLEMENTING GEOMETRICAL VALUES IN EFFECT AT RCSB SINCE JULY 31 2007. AS A RESULT, STRUCTURE STATISTICS FOR THIS ENTRY SLIGHTLY DEVIATES FROM THE PUBLISHED ONE, AS FOLLOWS (CURRENT VS PUBLISHED): NOE VIOLATIONS (0.00+-0.00) VS (0.20+-0.42); MAXIMUM VIOLATION (0.00+-0.00) VS (0.25+-0.02); RMSD OF VIOLATIONS (0.02+-0.00) VS (0.02+-0.00); BOND LENGTHS (0.006+-0.000) VS (0.005+-0.000); BOND ANGLES (0.74+-0.01) VS (0.95+-0.02); IMPROPERS (0.38+-0.01) VS (0.44+-0.04); PAIRWISE RMSD: ALL ATOMS (0.68+-0.19) VS (0.80+-0.25); ALL ATOMS EXCEPT T18, T19, A20 (0.45+-0.14) VS (0.49+-0.13). TORSION ANGLE DYNAMICS CARTESIAN DYNAMICS MATRIX RELAXATION 1 lowest energy 0.5-5.0 mM HUMAN TELOMERE DNA, 90% H2O/10% D2O 90% H2O/10% D2O Varian collection VNMR 6.0 Accelrys data analysis Felix 2000 Brunger, A.T. et al. refinement X-PLOR 3.851 600 Varian INOVA VARIAN INOVA 800 Bruker AVANCE BRUKER AVANCE DT 1 n 1 DT 1 A DA 2 n 2 DA 2 A DG 3 n 3 DG 3 A DG 4 n 4 DG 4 A DG 5 n 5 DG 5 A DT 6 n 6 DT 6 A DT 7 n 7 DT 7 A DA 8 n 8 DA 8 A DG 9 n 9 DG 9 A DG 10 n 10 DG 10 A DG 11 n 11 DG 11 A DT 12 n 12 DT 12 A DT 13 n 13 DT 13 A DA 14 n 14 DA 14 A BGM 15 n 15 BGM 15 A DG 16 n 16 DG 16 A DG 17 n 17 DG 17 A DT 18 n 18 DT 18 A DT 19 n 19 DT 19 A DA 20 n 20 DA 20 A DG 21 n 21 DG 21 A DG 22 n 22 DG 22 A DG 23 n 23 DG 23 A DT 24 n 24 DT 24 A DT 25 n 25 DT 25 A author_defined_assembly 1 monomeric A BGM 15 A BGM 15 DG 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 Monomeric Human Telomere DNA Tetraplex with 3+1 Strand Fold Topology, Two Edgewise Loops and Double-Chain Reversal Loop, Form 2 15BrG, NMR, 10 Structures 1 N N covale 1.618 both A DA 14 A O3' DA 14 1_555 A BGM 15 A P BGM 15 1_555 covale 1.618 both A BGM 15 A O3' BGM 15 1_555 A DG 16 A P DG 16 1_555 hydrog TYPE_6_PAIR A DG 3 A N7 DG 3 1_555 A DG 11 A N2 DG 11 1_555 hydrog TYPE_6_PAIR A DG 3 A O6 DG 3 1_555 A DG 11 A N1 DG 11 1_555 hydrog TYPE_6_PAIR A DG 3 A N1 DG 3 1_555 A DG 21 A O6 DG 21 1_555 hydrog TYPE_6_PAIR A DG 3 A N2 DG 3 1_555 A DG 21 A N7 DG 21 1_555 hydrog TYPE_6_PAIR A DG 4 A N1 DG 4 1_555 A DG 10 A O6 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N2 DG 4 1_555 A DG 10 A N7 DG 10 1_555 hydrog TYPE_6_PAIR A DG 4 A N7 DG 4 1_555 A DG 22 A N2 DG 22 1_555 hydrog TYPE_6_PAIR A DG 4 A O6 DG 4 1_555 A DG 22 A N1 DG 22 1_555 hydrog TYPE_6_PAIR A DG 5 A N1 DG 5 1_555 A DG 9 A O6 DG 9 1_555 hydrog TYPE_6_PAIR A DG 5 A N2 DG 5 1_555 A DG 9 A N7 DG 9 1_555 hydrog TYPE_6_PAIR A DG 5 A N7 DG 5 1_555 A DG 23 A N2 DG 23 1_555 hydrog TYPE_6_PAIR A DG 5 A O6 DG 5 1_555 A DG 23 A N1 DG 23 1_555 hydrog DT-DA PAIR A DT 7 A O2 DT 7 1_555 A DA 8 A N6 DA 8 1_555 hydrog DT-DT MISPAIR A DT 7 A N3 DT 7 1_555 A DT 24 A O2 DT 24 1_555 hydrog DA-DT PAIR A DA 8 A N6 DA 8 1_555 A DT 24 A O4 DT 24 1_555 hydrog DA-DT PAIR A DA 8 A N6 DA 8 1_555 A DT 25 A O4 DT 25 1_555 hydrog TYPE_6_PAIR A DG 9 A N1 DG 9 1_555 A DG 17 A O6 DG 17 1_555 hydrog TYPE_6_PAIR A DG 9 A N2 DG 9 1_555 A DG 17 A N7 DG 17 1_555 hydrog TYPE_6_PAIR A DG 10 A N1 DG 10 1_555 A DG 16 A O6 DG 16 1_555 hydrog TYPE_6_PAIR A DG 10 A N2 DG 10 1_555 A DG 16 A N7 DG 16 1_555 hydrog TYPE_6_PAIR A DG 11 A N7 DG 11 1_555 A BGM 15 A N2 BGM 15 1_555 hydrog TYPE_6_PAIR A DG 11 A O6 DG 11 1_555 A BGM 15 A N1 BGM 15 1_555 hydrog TYPE_6_PAIR A BGM 15 A N7 BGM 15 1_555 A DG 21 A N2 DG 21 1_555 hydrog TYPE_6_PAIR A BGM 15 A O6 BGM 15 1_555 A DG 21 A N1 DG 21 1_555 hydrog TYPE_6_PAIR A DG 16 A N1 DG 16 1_555 A DG 22 A O6 DG 22 1_555 hydrog TYPE_6_PAIR A DG 16 A N2 DG 16 1_555 A DG 22 A N7 DG 22 1_555 hydrog TYPE_6_PAIR A DG 17 A N1 DG 17 1_555 A DG 23 A O6 DG 23 1_555 hydrog TYPE_6_PAIR A DG 17 A N2 DG 17 1_555 A DG 23 A N7 DG 23 1_555 hydrog DG-DT MISPAIR A DG 17 A N1 DG 17 1_555 A DT 24 A O4 DT 24 1_555 DNA G-TETRAD, 3+1 STRAND FOLDING, EDGEWISE, DOUBLE-CHAIN REVERSAL LOOPS, 10 STRUCTURES, 15BrG Form 2, DNA 2JSQ PDB 1 2JSQ 1 25 2JSQ 1 25 2JSQ A 1 1 25 1 P 1