1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kuryavyi, V.V.
Phan, A.T.
Luu, K.N.
Patel, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H13 Br N5 O7 P
426.117
n
8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
35
6517
6525
10.1093/nar/gkm706
17895279
Structure of two intramolecular G-quadruplexes formed by natural human telomere sequences in K+ solution.
2007
10.2210/pdb2jsq/pdb
pdb_00002jsq
7974.971
HUMAN TELOMERE DNA
1
syn
polymer
no
yes
(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(BGM)(DG)(DG)(DT)(DT)
(DA)(DG)(DG)(DG)(DT)(DT)
TAGGGTTAGGGTTAGGGTTAGGGTT
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
1
0
2008-07-15
1
1
2011-07-13
1
2
2022-03-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.pdbx_leaving_atom_flag
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF NA
TETRAHYMENA TELOMERE DNA SOLUTION STRUCTURE
HUMAN TELOMERE DNA CRYSTAL STRUCTURE IN THE PRESENCE OF K
3 REPEATS OF HUMAN TELOMERE DNA SOLUTION STRUCTURE
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS 16BrG Form 1
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS Natural Form 2
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS Natural Form 1
BMRB
Y
RCSB
2007-07-11
REL
REL
structures with the lowest energy
50
10
1H-1H NOESY
1H-1H TOCSY
1H-31P COSY
1H-1H COSY
1H-15N JRHMQC
1H-15N HMBC
0.5
mM
70
7.0
1
atm
298
K
AFTER DEPOSITION, THE MOLECULES WERE ENERGY MINIMIZED WITH THE ENERGY FUNCTION IMPLEMENTING GEOMETRICAL VALUES IN EFFECT AT RCSB SINCE JULY 31 2007. AS A RESULT, STRUCTURE STATISTICS FOR THIS ENTRY SLIGHTLY DEVIATES FROM THE PUBLISHED ONE, AS FOLLOWS (CURRENT VS PUBLISHED): NOE VIOLATIONS (0.00+-0.00) VS (0.20+-0.42); MAXIMUM VIOLATION (0.00+-0.00) VS (0.25+-0.02); RMSD OF VIOLATIONS (0.02+-0.00) VS (0.02+-0.00); BOND LENGTHS (0.006+-0.000) VS (0.005+-0.000); BOND ANGLES (0.74+-0.01) VS (0.95+-0.02); IMPROPERS (0.38+-0.01) VS (0.44+-0.04); PAIRWISE RMSD: ALL ATOMS (0.68+-0.19) VS (0.80+-0.25); ALL ATOMS EXCEPT T18, T19, A20 (0.45+-0.14) VS (0.49+-0.13).
TORSION ANGLE DYNAMICS CARTESIAN DYNAMICS MATRIX RELAXATION
1
lowest energy
0.5-5.0 mM HUMAN TELOMERE DNA, 90% H2O/10% D2O
90% H2O/10% D2O
Varian
collection
VNMR
6.0
Accelrys
data analysis
Felix
2000
Brunger, A.T. et al.
refinement
X-PLOR
3.851
600
Varian
INOVA
VARIAN INOVA
800
Bruker
AVANCE
BRUKER AVANCE
DT
1
n
1
DT
1
A
DA
2
n
2
DA
2
A
DG
3
n
3
DG
3
A
DG
4
n
4
DG
4
A
DG
5
n
5
DG
5
A
DT
6
n
6
DT
6
A
DT
7
n
7
DT
7
A
DA
8
n
8
DA
8
A
DG
9
n
9
DG
9
A
DG
10
n
10
DG
10
A
DG
11
n
11
DG
11
A
DT
12
n
12
DT
12
A
DT
13
n
13
DT
13
A
DA
14
n
14
DA
14
A
BGM
15
n
15
BGM
15
A
DG
16
n
16
DG
16
A
DG
17
n
17
DG
17
A
DT
18
n
18
DT
18
A
DT
19
n
19
DT
19
A
DA
20
n
20
DA
20
A
DG
21
n
21
DG
21
A
DG
22
n
22
DG
22
A
DG
23
n
23
DG
23
A
DT
24
n
24
DT
24
A
DT
25
n
25
DT
25
A
author_defined_assembly
1
monomeric
A
BGM
15
A
BGM
15
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
Monomeric Human Telomere DNA Tetraplex with 3+1 Strand Fold Topology, Two Edgewise Loops and Double-Chain Reversal Loop, Form 2 15BrG, NMR, 10 Structures
1
N
N
covale
1.618
both
A
DA
14
A
O3'
DA
14
1_555
A
BGM
15
A
P
BGM
15
1_555
covale
1.618
both
A
BGM
15
A
O3'
BGM
15
1_555
A
DG
16
A
P
DG
16
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N7
DG
3
1_555
A
DG
11
A
N2
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
O6
DG
3
1_555
A
DG
11
A
N1
DG
11
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N1
DG
3
1_555
A
DG
21
A
O6
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N2
DG
3
1_555
A
DG
21
A
N7
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N1
DG
4
1_555
A
DG
10
A
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N2
DG
4
1_555
A
DG
10
A
N7
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N7
DG
4
1_555
A
DG
22
A
N2
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
O6
DG
4
1_555
A
DG
22
A
N1
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N1
DG
5
1_555
A
DG
9
A
O6
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N2
DG
5
1_555
A
DG
9
A
N7
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N7
DG
5
1_555
A
DG
23
A
N2
DG
23
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
O6
DG
5
1_555
A
DG
23
A
N1
DG
23
1_555
hydrog
DT-DA PAIR
A
DT
7
A
O2
DT
7
1_555
A
DA
8
A
N6
DA
8
1_555
hydrog
DT-DT MISPAIR
A
DT
7
A
N3
DT
7
1_555
A
DT
24
A
O2
DT
24
1_555
hydrog
DA-DT PAIR
A
DA
8
A
N6
DA
8
1_555
A
DT
24
A
O4
DT
24
1_555
hydrog
DA-DT PAIR
A
DA
8
A
N6
DA
8
1_555
A
DT
25
A
O4
DT
25
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N1
DG
9
1_555
A
DG
17
A
O6
DG
17
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N2
DG
9
1_555
A
DG
17
A
N7
DG
17
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N1
DG
10
1_555
A
DG
16
A
O6
DG
16
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N2
DG
10
1_555
A
DG
16
A
N7
DG
16
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
N7
DG
11
1_555
A
BGM
15
A
N2
BGM
15
1_555
hydrog
TYPE_6_PAIR
A
DG
11
A
O6
DG
11
1_555
A
BGM
15
A
N1
BGM
15
1_555
hydrog
TYPE_6_PAIR
A
BGM
15
A
N7
BGM
15
1_555
A
DG
21
A
N2
DG
21
1_555
hydrog
TYPE_6_PAIR
A
BGM
15
A
O6
BGM
15
1_555
A
DG
21
A
N1
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
16
A
N1
DG
16
1_555
A
DG
22
A
O6
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
16
A
N2
DG
16
1_555
A
DG
22
A
N7
DG
22
1_555
hydrog
TYPE_6_PAIR
A
DG
17
A
N1
DG
17
1_555
A
DG
23
A
O6
DG
23
1_555
hydrog
TYPE_6_PAIR
A
DG
17
A
N2
DG
17
1_555
A
DG
23
A
N7
DG
23
1_555
hydrog
DG-DT MISPAIR
A
DG
17
A
N1
DG
17
1_555
A
DT
24
A
O4
DT
24
1_555
DNA
G-TETRAD, 3+1 STRAND FOLDING, EDGEWISE, DOUBLE-CHAIN REVERSAL LOOPS, 10 STRUCTURES, 15BrG Form 2, DNA
2JSQ
PDB
1
2JSQ
1
25
2JSQ
1
25
2JSQ
A
1
1
25
1
P 1