1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 He, Y. Radhakrishnan, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 373 190 196 10.1016/j.jmb.2007.07.074 17765920 Structural Basis for Ubiquitin Recognition by SH3 Domains 2007 10.2210/pdb2jt4/pdb pdb_00002jt4 8179.383 Cytoskeleton assembly control protein SLA1 1 man polymer 8568.769 Ubiquitin SH3 domain sequence database residues 350-420 1 man polymer no no MASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKHTE MASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKHTE A polypeptide(L) no no MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia sample SLA1 4932 Saccharomyces cerevisiae 562 Escherichia coli pET30 vector baker's yeast Saccharomyces Escherichia sample UBI1, RPL40A 4932 Saccharomyces cerevisiae 562 Escherichia coli pET3a vector database_2 pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Database references Derived calculations 1 0 2007-09-25 1 1 2011-07-13 1 2 2022-03-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession HELIX DETERMINATION METHOD: AUTHOR The authors state that these records reflect consensus start and end residues in the 20 NMR models. SHEET DETERMINATION METHOD: AUTHOR The authors state that these records reflect consensus start and end residues in the 20 NMR models. BMRB Y RCSB 2007-07-18 REL REL structures with the least restraint energies, restraint violations and rms deviations from ideal covalent geometry 80 20 3D HNCACB 3D HNCACB 3D C(CO)NH-TOCSY 3D C(CO)NH-TOCSY 3D HNCO 3D HNCO 3D H(CCO)NH-TOCSY 3D H(CCO)NH-TOCSY 3D 15N-edited NOESY 3D 15N-edited NOESY 3D HCCH-COSY 3D HCCH-COSY 3D HCCH-TOCSY 3D HCCH-TOCSY 3D 13C-edited NOESY 3D 13C-edited NOESY 3D 13C-filtered, 13C-edited NOESY 3D 13C-filtered, 13C-edited NOESY 2D 15N,13C-double-half-filtered NOESY 2D 15N,13C-double-half-filtered NOESY 0.9 mM [U-98% 13C; U-98% 15N] 0.9 mM 0.9 mM [U-98% 13C; U-98% 15N] 0.9 mM 0.9 mM [U-98% 13C; U-98% 15N] 0.9 mM 0.9 mM [U-98% 13C; U-98% 15N] 0.9 mM 20 6 ambient 318 K torsion angle dynamics, simulated annealing 1 closest to the average 0.9 mM [U-98% 13C; U-98% 15N] SH3, 0.9 mM ubiquitin, 90% H2O/10% D2O 90% H2O/10% D2O 0.9 mM [U-98% 13C; U-98% 15N] ubiquitin, 0.9 mM SH3, 90% H2O/10% D2O 90% H2O/10% D2O 0.9 mM [U-98% 13C; U-98% 15N] SH3, 0.9 mM ubiquitin, 100% D2O 100% D2O 0.9 mM [U-98% 13C; U-98% 15N] ubiquitin, 0.9 mM SH3, 100% D2O 100% D2O Varian collection VNMR Accelrys Software Inc. processing Felix Accelrys Software Inc. data analysis Felix Johnson, One Moon Scientific data analysis NMRView Johnson, One Moon Scientific chemical shift assignment NMRView Linge, O'Donoghue and Nilges refinement ARIA Linge, O'Donoghue and Nilges structure solution ARIA Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read structure solution CNS 600 Varian INOVA Varian INOVA MET 1 n 1 MET 1 A ALA 2 n 2 ALA 2 A SER 3 n 3 SER 3 A LYS 4 n 4 LYS 4 A SER 5 n 5 SER 5 A LYS 6 n 6 LYS 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A GLY 9 n 9 GLY 9 A ILE 10 n 10 ILE 10 A VAL 11 n 11 VAL 11 A GLN 12 n 12 GLN 12 A TYR 13 n 13 TYR 13 A ASP 14 n 14 ASP 14 A PHE 15 n 15 PHE 15 A MET 16 n 16 MET 16 A ALA 17 n 17 ALA 17 A GLU 18 n 18 GLU 18 A SER 19 n 19 SER 19 A GLN 20 n 20 GLN 20 A ASP 21 n 21 ASP 21 A GLU 22 n 22 GLU 22 A LEU 23 n 23 LEU 23 A THR 24 n 24 THR 24 A ILE 25 n 25 ILE 25 A LYS 26 n 26 LYS 26 A SER 27 n 27 SER 27 A GLY 28 n 28 GLY 28 A ASP 29 n 29 ASP 29 A LYS 30 n 30 LYS 30 A VAL 31 n 31 VAL 31 A TYR 32 n 32 TYR 32 A ILE 33 n 33 ILE 33 A LEU 34 n 34 LEU 34 A ASP 35 n 35 ASP 35 A ASP 36 n 36 ASP 36 A LYS 37 n 37 LYS 37 A LYS 38 n 38 LYS 38 A SER 39 n 39 SER 39 A LYS 40 n 40 LYS 40 A ASP 41 n 41 ASP 41 A TRP 42 n 42 TRP 42 A TRP 43 n 43 TRP 43 A MET 44 n 44 MET 44 A CYS 45 n 45 CYS 45 A GLN 46 n 46 GLN 46 A LEU 47 n 47 LEU 47 A VAL 48 n 48 VAL 48 A ASP 49 n 49 ASP 49 A SER 50 n 50 SER 50 A GLY 51 n 51 GLY 51 A LYS 52 n 52 LYS 52 A SER 53 n 53 SER 53 A GLY 54 n 54 GLY 54 A LEU 55 n 55 LEU 55 A VAL 56 n 56 VAL 56 A PRO 57 n 57 PRO 57 A ALA 58 n 58 ALA 58 A GLN 59 n 59 GLN 59 A PHE 60 n 60 PHE 60 A ILE 61 n 61 ILE 61 A GLU 62 n 62 GLU 62 A PRO 63 n 63 PRO 63 A VAL 64 n 64 VAL 64 A ARG 65 n 65 ARG 65 A ASP 66 n 66 ASP 66 A LYS 67 n 67 LYS 67 A LYS 68 n 68 LYS 68 A HIS 69 n 69 HIS 69 A THR 70 n 70 THR 70 A GLU 71 n 71 GLU 71 A MET 1 n 1 MET 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B PHE 4 n 4 PHE 4 B VAL 5 n 5 VAL 5 B LYS 6 n 6 LYS 6 B THR 7 n 7 THR 7 B LEU 8 n 8 LEU 8 B THR 9 n 9 THR 9 B GLY 10 n 10 GLY 10 B LYS 11 n 11 LYS 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B THR 14 n 14 THR 14 B LEU 15 n 15 LEU 15 B GLU 16 n 16 GLU 16 B VAL 17 n 17 VAL 17 B GLU 18 n 18 GLU 18 B SER 19 n 19 SER 19 B SER 20 n 20 SER 20 B ASP 21 n 21 ASP 21 B THR 22 n 22 THR 22 B ILE 23 n 23 ILE 23 B ASP 24 n 24 ASP 24 B ASN 25 n 25 ASN 25 B VAL 26 n 26 VAL 26 B LYS 27 n 27 LYS 27 B SER 28 n 28 SER 28 B LYS 29 n 29 LYS 29 B ILE 30 n 30 ILE 30 B GLN 31 n 31 GLN 31 B ASP 32 n 32 ASP 32 B LYS 33 n 33 LYS 33 B GLU 34 n 34 GLU 34 B GLY 35 n 35 GLY 35 B ILE 36 n 36 ILE 36 B PRO 37 n 37 PRO 37 B PRO 38 n 38 PRO 38 B ASP 39 n 39 ASP 39 B GLN 40 n 40 GLN 40 B GLN 41 n 41 GLN 41 B ARG 42 n 42 ARG 42 B LEU 43 n 43 LEU 43 B ILE 44 n 44 ILE 44 B PHE 45 n 45 PHE 45 B ALA 46 n 46 ALA 46 B GLY 47 n 47 GLY 47 B LYS 48 n 48 LYS 48 B GLN 49 n 49 GLN 49 B LEU 50 n 50 LEU 50 B GLU 51 n 51 GLU 51 B ASP 52 n 52 ASP 52 B GLY 53 n 53 GLY 53 B ARG 54 n 54 ARG 54 B THR 55 n 55 THR 55 B LEU 56 n 56 LEU 56 B SER 57 n 57 SER 57 B ASP 58 n 58 ASP 58 B TYR 59 n 59 TYR 59 B ASN 60 n 60 ASN 60 B ILE 61 n 61 ILE 61 B GLN 62 n 62 GLN 62 B LYS 63 n 63 LYS 63 B GLU 64 n 64 GLU 64 B SER 65 n 65 SER 65 B THR 66 n 66 THR 66 B LEU 67 n 67 LEU 67 B HIS 68 n 68 HIS 68 B LEU 69 n 69 LEU 69 B VAL 70 n 70 VAL 70 B LEU 71 n 71 LEU 71 B ARG 72 n 72 ARG 72 B LEU 73 n 73 LEU 73 B ARG 74 n 74 ARG 74 B GLY 75 n 75 GLY 75 B GLY 76 n 76 GLY 76 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O VAL 56 A O VAL 56 A N TRP 43 A N TRP 43 A O GLN 46 A O GLN 46 A N TYR 32 A N TYR 32 A O ILE 33 A O ILE 33 A N LYS 7 A N LYS 7 A N ILE 10 A N ILE 10 A O GLU 62 A O GLU 62 B O LEU 15 B O LEU 15 B N ILE 3 B N ILE 3 B N LYS 6 B N LYS 6 B O LEU 67 B O LEU 67 B O HIS 68 B O HIS 68 B N ILE 44 B N ILE 44 B N PHE 45 B N PHE 45 B O LYS 48 B O LYS 48 1 A A HZ1 OD1 LYS ASP 7 36 1.56 1 B B HZ3 OE2 LYS GLU 11 34 1.58 2 B B HH12 OE1 ARG GLU 42 51 1.58 3 A A HZ1 OD2 LYS ASP 7 36 1.55 3 A A OE1 HZ2 GLU LYS 62 67 1.58 3 B B HZ2 OE1 LYS GLU 33 34 1.59 5 B B HZ3 OE1 LYS GLU 11 34 1.57 6 A A HZ1 OD1 LYS ASP 7 36 1.59 7 A A HG3 H ARG ASP 65 66 1.31 9 A A HG3 HD2 PRO LYS 63 68 1.25 10 A A HZ2 O LYS GLU 40 71 1.56 10 A A HZ1 OD2 LYS ASP 7 66 1.58 10 A B OE2 HH12 GLU ARG 22 72 1.60 10 B B H1 OE2 MET GLU 1 16 1.60 11 B B OD2 HH12 ASP ARG 39 74 1.56 12 B B HZ3 OE2 LYS GLU 11 34 1.54 13 A A OD2 HZ3 ASP LYS 35 38 1.56 13 A B OE2 HH12 GLU ARG 22 42 1.57 13 A A HG OD1 SER ASP 19 21 1.59 14 A A OD2 HZ3 ASP LYS 66 68 1.57 15 B B HD13 H LEU LEU 8 71 1.26 15 A B OE2 HH12 GLU ARG 22 42 1.57 15 B B H2 OE2 MET GLU 1 16 1.58 17 A A HZ3 OD1 LYS ASP 7 36 1.57 18 B B OD2 HZ2 ASP LYS 21 29 1.58 19 A A OE1 HZ3 GLU LYS 62 68 1.60 1 A ARG 65 70.14 -42.86 1 A ASP 66 -49.33 -71.73 2 A SER 5 -100.10 -64.10 2 A SER 50 -149.93 -62.47 2 A ARG 65 73.75 -23.53 2 A ASP 66 71.92 138.06 2 A LYS 67 -159.37 29.24 2 B VAL 17 -127.17 -157.98 2 B LEU 73 -78.01 23.32 3 A SER 3 63.16 86.46 3 A SER 39 -106.30 -89.88 3 A LYS 40 165.17 -55.04 3 A ARG 65 -56.48 -71.33 3 A ASP 66 -151.48 4.85 3 A HIS 69 63.71 -174.62 3 B LYS 33 -77.98 -72.73 4 A SER 3 65.41 -166.72 4 A GLU 18 -130.87 -33.97 4 A ASP 41 -120.71 -63.44 4 A ARG 65 -103.99 -64.24 4 B LYS 33 -107.82 -60.92 4 B ALA 46 58.53 17.22 4 B ARG 74 43.93 80.71 5 A LYS 4 64.69 83.13 5 A LYS 6 62.74 -167.30 5 A ASP 49 -62.84 -70.73 5 A ARG 65 -163.91 -54.58 5 A ASP 66 -170.47 -173.16 5 A THR 70 49.16 93.90 5 B LYS 33 -92.68 -63.05 5 B ASN 60 58.86 71.69 5 B LEU 73 -67.48 90.76 6 A ALA 2 -136.10 -44.65 6 A SER 3 51.58 85.99 6 A LYS 4 63.47 89.42 6 A LYS 37 -141.71 27.27 6 A LYS 40 70.17 -69.45 6 A ASP 66 65.84 -87.99 6 A LYS 67 -147.22 -7.47 6 A LYS 68 69.45 115.99 7 A LYS 4 -142.20 -75.27 7 A SER 5 -145.77 -49.56 7 A GLU 18 -141.62 -41.28 7 A ARG 65 -140.68 -82.15 7 B ASN 60 63.27 90.92 8 A ALA 2 63.31 94.76 8 A LEU 34 -76.37 -78.27 8 A LYS 37 -94.51 -62.72 8 A VAL 64 -82.47 49.48 8 A LYS 68 63.21 94.33 8 A HIS 69 -163.45 -79.66 8 A THR 70 48.86 76.20 8 B ALA 46 59.37 19.49 8 B ARG 74 67.63 -66.54 9 A LYS 37 -148.20 21.74 9 A LYS 40 67.23 -64.96 9 A ARG 65 -141.40 -89.93 9 A ASP 66 -146.38 -158.84 9 A LYS 67 77.97 -51.49 9 B LYS 33 -82.72 -70.07 10 A ASP 49 -62.85 -71.62 10 A ARG 65 -169.48 76.46 10 A LYS 67 52.15 76.83 10 B LYS 33 -90.64 -64.89 10 B PRO 37 -37.37 121.44 11 A ALA 2 63.75 177.40 11 A LEU 34 -94.07 -77.16 11 A ASP 41 -140.70 -71.46 11 A ARG 65 -99.88 -86.47 11 A LYS 67 66.59 100.86 11 A THR 70 46.60 -98.26 11 B GLU 51 -68.95 -85.48 11 B ASP 52 -179.07 -58.66 11 B LEU 73 55.60 86.68 12 A SER 3 78.12 168.17 12 A LYS 4 -173.47 -75.16 12 A LYS 6 71.27 148.56 12 A ARG 65 160.25 -26.73 12 A ASP 66 79.19 -0.38 12 A THR 70 -169.62 -21.72 12 B LEU 73 -73.95 26.42 12 B ARG 74 64.00 103.91 13 A ALA 2 68.21 100.82 13 A ASP 41 -127.95 -52.82 13 A ARG 65 -133.16 -65.08 13 A ASP 66 171.19 116.23 13 A LYS 67 59.25 177.41 13 B ASN 60 64.89 68.50 14 A SER 3 -81.11 35.66 14 A SER 39 -125.00 -81.07 14 A LYS 40 -175.79 -54.67 14 B GLN 41 -68.09 99.71 14 B LEU 73 -82.98 30.14 15 A SER 3 65.82 172.58 15 A LYS 4 -131.20 -48.41 15 A SER 5 -139.89 -57.51 15 A ASP 66 -160.12 -61.89 15 B ASN 60 60.28 76.96 15 B ARG 74 65.68 -67.57 16 A SER 5 73.56 138.87 16 A ASP 66 178.68 -84.23 16 A LYS 67 -163.55 95.01 16 B LYS 33 -91.02 -69.37 16 B LEU 73 63.02 85.76 17 A LEU 34 -98.16 -74.16 17 A ASP 36 -122.00 -58.17 17 A ASP 66 72.13 -37.80 17 B LYS 33 -74.38 -77.48 17 B ASN 60 60.91 67.98 17 B ARG 74 58.41 87.49 18 A LYS 4 -97.35 34.48 18 A SER 5 48.05 90.58 18 A LEU 34 -80.02 -74.73 18 A ASP 36 -128.53 -62.85 18 A ASP 41 -124.89 -51.67 18 A ASP 66 -166.11 -12.72 18 A LYS 67 76.65 161.19 18 A HIS 69 -127.39 -90.00 18 B ALA 46 58.69 18.47 19 A SER 3 68.83 108.87 19 A LYS 4 70.67 108.34 19 A LEU 34 -92.52 -76.50 19 A ASP 66 67.47 100.22 19 A LYS 67 68.13 77.00 19 B LEU 73 -55.05 100.33 20 A ALA 2 -161.86 119.94 20 A LYS 4 59.61 81.17 20 A LYS 6 -89.82 35.50 20 A LYS 7 64.39 133.28 20 A ARG 65 -164.00 -50.38 20 A HIS 69 -86.11 33.21 20 B ARG 74 71.45 -69.18 Solution Structure of the Sla1 SH3-3-Ubiquitin Complex 1 N N 2 N N B ILE 23 B ILE 23 HELX_P B LYS 33 B LYS 33 1 1 11 SIGNALING PROTEIN endocytosis, monoubiquitin signaling, ubiquitin-binding motif, SH3, ubiquitin, Actin-binding, Cytoplasm, Cytoskeleton, Phosphorylation, SH3 domain, DNA damage, DNA repair, Nucleus, Ubl conjugation, SIGNALING PROTEIN SLA1_YEAST UNP 1 350 P32790 MASKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKKHTE UBIQ_YEAST UNP 2 1 P61864 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 350 420 2JT4 1 71 P32790 A 1 1 71 1 76 2JT4 1 76 P61864 B 2 1 76 5 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A SER 53 A SER 53 A PRO 57 A PRO 57 A TRP 42 A TRP 42 A LEU 47 A LEU 47 A LYS 30 A LYS 30 A ASP 35 A ASP 35 A LYS 7 A LYS 7 A VAL 11 A VAL 11 A ILE 61 A ILE 61 A PRO 63 A PRO 63 B THR 12 B THR 12 B GLU 16 B GLU 16 B GLN 2 B GLN 2 B THR 7 B THR 7 B THR 66 B THR 66 B LEU 71 B LEU 71 B GLN 41 B GLN 41 B PHE 45 B PHE 45 B LYS 48 B LYS 48 B LEU 50 B LEU 50