1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Tolkatchev, D. Wang, P. Chen, Z. Xu, P. Ni, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 17 711 724 10.1110/ps.073295308 18359860 Structure dissection of human progranulin identifies well-folded granulin/epithelin modules with unique functional activities. 2008 10.2210/pdb2jye/pdb pdb_00002jye 7920.015 Granulin A 1 man polymer no no AMDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQKLAAALEHHHHHH AMDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQKLAAALEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample GRN 9606 Homo sapiens 562 Escherichia coli Origami(DE3) pET-32 database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2008-04-22 1 1 2011-07-13 1 2 2022-03-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Carp granulin-1 fragment Human granulin A fragment Oryzain beta fragment BMRB Y RCSB 2007-12-13 REL REL structures with the lowest energy 60 10 2D 1H-15N HSQC 2D 1H-1H TOCSY MJ-[1H,15N]-HSQC 2D 1H-1H NOESY 3D 1H-15N TOCSY 3D 1H-15N NOESY 2D 1H-15N HSQC 2D 1H-1H TOCSY 2D 1H-1H NOESY 10 mM 150 mM 0.2 mM 10 mM 150 mM 0.2 mM 6.8 ambient 298 K 6.8 ambient 288 K simulated annealing 1 lowest energy 10 mM sodium phosphate, 150 mM sodium chloride, 0.2 mM EDTA, 90% H2O/10% D2O 90% H2O/10% D2O 10 mM sodium phosphate, 150 mM sodium chloride, 0.2 mM EDTA, 100% D2O 100% D2O Linge, O'Donoghue and Nilges structure solution ARIA 1.0 Johnson, One Moon Scientific chemical shift assignment NMRView Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Tripos data analysis SYBYL Accelrys Software Inc. data analysis Insight II Koradi, Billeter and Wuthrich data analysis MOLMOL Linge, O'Donoghue and Nilges refinement ARIA 1.0 800 Bruker AVANCE Bruker Avance 500 Bruker AVANCE Bruker Avance ALA 1 n 1 ALA 1 A MET 2 n 2 MET 2 A ASP 3 n 3 ASP 3 A VAL 4 n 4 VAL 4 A LYS 5 n 5 LYS 5 A CYS 6 n 6 CYS 6 A ASP 7 n 7 ASP 7 A MET 8 n 8 MET 8 A GLU 9 n 9 GLU 9 A VAL 10 n 10 VAL 10 A SER 11 n 11 SER 11 A CYS 12 n 12 CYS 12 A PRO 13 n 13 PRO 13 A ASP 14 n 14 ASP 14 A GLY 15 n 15 GLY 15 A TYR 16 n 16 TYR 16 A THR 17 n 17 THR 17 A CYS 18 n 18 CYS 18 A CYS 19 n 19 CYS 19 A ARG 20 n 20 ARG 20 A LEU 21 n 21 LEU 21 A GLN 22 n 22 GLN 22 A SER 23 n 23 SER 23 A GLY 24 n 24 GLY 24 A ALA 25 n 25 ALA 25 A TRP 26 n 26 TRP 26 A GLY 27 n 27 GLY 27 A CYS 28 n 28 CYS 28 A CYS 29 n 29 CYS 29 A PRO 30 n 30 PRO 30 A PHE 31 n 31 PHE 31 A THR 32 n 32 THR 32 A GLN 33 n 33 GLN 33 A ALA 34 n 34 ALA 34 A VAL 35 n 35 VAL 35 A CYS 36 n 36 CYS 36 A CYS 37 n 37 CYS 37 A GLU 38 n 38 GLU 38 A ASP 39 n 39 ASP 39 A HIS 40 n 40 HIS 40 A ILE 41 n 41 ILE 41 A HIS 42 n 42 HIS 42 A CYS 43 n 43 CYS 43 A CYS 44 n 44 CYS 44 A PRO 45 n 45 PRO 45 A ALA 46 n 46 ALA 46 A GLY 47 n 47 GLY 47 A PHE 48 n 48 PHE 48 A THR 49 n 49 THR 49 A CYS 50 n 50 CYS 50 A ASP 51 n 51 ASP 51 A THR 52 n 52 THR 52 A GLN 53 n 53 GLN 53 A LYS 54 n 54 LYS 54 A GLY 55 n 55 GLY 55 A THR 56 n 56 THR 56 A CYS 57 n 57 CYS 57 A GLU 58 n 58 GLU 58 A GLN 59 n 59 GLN 59 A LYS 60 n 60 LYS 60 A LEU 61 n 61 LEU 61 A ALA 62 n 62 ALA 62 A ALA 63 n 63 ALA 63 A ALA 64 n 64 ALA 64 A LEU 65 n 65 LEU 65 A GLU 66 n 66 GLU 66 A HIS 67 n 67 HIS 67 A HIS 68 n 68 HIS 68 A HIS 69 n 69 HIS 69 A HIS 70 n 70 HIS 70 A HIS 71 n 71 HIS 71 A HIS 72 n 72 HIS 72 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 19 A N CYS 19 A O GLY 27 A O GLY 27 A O ASP 51 A O ASP 51 A N THR 56 A N THR 56 1 A MET 8 -92.75 46.28 1 A GLU 9 -164.93 -1.51 1 A SER 11 -151.35 88.88 1 A PRO 13 -75.48 -156.59 1 A SER 23 -73.24 25.71 1 A GLN 33 -178.01 -157.28 1 A ALA 34 -58.17 95.21 1 A GLU 38 57.17 -167.97 1 A ASP 39 -92.29 -140.63 1 A HIS 40 62.86 -95.31 1 A PRO 45 -69.13 34.68 1 A ALA 46 66.29 161.40 1 A GLN 53 57.46 14.05 1 A GLU 58 -156.60 82.32 1 A GLN 59 63.24 164.46 1 A LEU 61 -141.93 -82.15 1 A ALA 62 -166.71 -10.67 1 A ALA 63 64.30 109.30 1 A ALA 64 55.88 72.71 2 A MET 2 -101.85 40.57 2 A ASP 7 -173.70 13.69 2 A GLU 9 -147.53 -41.44 2 A PRO 13 -69.84 -161.95 2 A ALA 25 -174.39 -171.87 2 A PRO 30 -74.66 39.20 2 A PHE 31 61.19 145.60 2 A THR 32 -175.56 40.93 2 A ALA 34 58.77 92.93 2 A CYS 37 -161.23 -79.36 2 A ASP 39 -165.43 -56.19 2 A HIS 40 -147.41 -48.86 2 A HIS 42 63.25 165.41 2 A PRO 45 -73.62 36.32 2 A ALA 46 67.02 127.22 2 A GLN 53 58.45 13.56 2 A GLN 59 -51.53 103.80 2 A LYS 60 54.76 179.77 2 A ALA 62 -124.27 -62.09 2 A ALA 63 -139.20 -158.73 2 A ALA 64 59.57 -95.92 2 A LEU 65 62.57 170.60 2 A HIS 67 -164.37 32.33 3 A MET 2 55.55 84.22 3 A MET 8 -87.18 38.18 3 A GLU 9 -161.06 -35.48 3 A PRO 13 -80.61 -156.19 3 A LEU 21 -105.31 -87.92 3 A ALA 34 -157.97 -62.52 3 A CYS 36 -147.99 -74.84 3 A CYS 37 46.38 -151.97 3 A HIS 40 -137.48 -35.18 3 A ILE 41 -165.23 -30.62 3 A CYS 44 66.63 144.55 3 A PRO 45 -62.14 -141.29 3 A ALA 46 -52.08 -83.74 3 A LYS 54 -173.31 36.09 3 A LYS 60 62.09 -175.89 3 A ALA 64 61.05 105.01 3 A HIS 67 61.87 103.68 3 A HIS 70 -107.39 -148.11 4 A ASP 7 61.80 167.83 4 A MET 8 -92.80 56.33 4 A GLU 9 -171.67 -8.16 4 A PRO 13 -78.96 -154.32 4 A LEU 21 -108.36 -78.04 4 A GLN 33 56.41 -160.89 4 A CYS 36 -174.84 39.50 4 A ASP 39 55.58 -161.99 4 A HIS 40 57.21 -168.13 4 A ILE 41 -143.01 -20.64 4 A CYS 44 63.28 157.33 4 A PRO 45 -57.19 -178.34 4 A THR 52 -74.06 47.38 4 A LYS 54 -174.07 32.17 4 A LYS 60 64.85 -73.16 4 A LEU 61 -57.02 -174.68 4 A ALA 64 -165.24 77.42 4 A LEU 65 66.78 147.51 4 A GLU 66 -127.45 -169.42 4 A HIS 68 -114.28 -144.85 4 A HIS 69 63.02 -171.72 5 A MET 2 55.49 -113.49 5 A ASP 3 64.56 141.05 5 A PRO 13 -66.92 -165.33 5 A GLN 22 -172.09 -46.99 5 A SER 23 170.25 -32.01 5 A ALA 25 -166.59 -165.99 5 A THR 32 -65.65 -158.79 5 A GLN 33 -109.00 -165.51 5 A ALA 34 69.61 86.05 5 A HIS 40 -159.68 49.37 5 A ILE 41 -163.09 -13.64 5 A CYS 44 64.01 142.53 5 A GLN 53 59.17 6.46 5 A LYS 60 48.66 84.50 5 A ALA 62 -160.32 2.50 5 A ALA 63 61.12 -87.51 5 A ALA 64 -157.42 70.71 5 A LEU 65 54.83 81.53 5 A GLU 66 -157.48 -59.33 6 A MET 2 58.80 95.57 6 A MET 8 -84.86 46.31 6 A GLU 9 -166.85 -12.62 6 A SER 11 -158.52 84.85 6 A PRO 13 -73.24 -164.93 6 A ALA 25 -176.57 -166.92 6 A GLN 33 60.55 -169.24 6 A VAL 35 -144.05 -66.32 6 A CYS 36 62.87 95.36 6 A CYS 37 -116.20 -146.10 6 A ASP 39 62.65 166.78 6 A PRO 45 -75.48 31.78 6 A ALA 46 66.47 125.34 6 A LYS 54 -153.21 17.97 6 A GLN 59 -62.43 84.77 6 A LYS 60 57.41 -164.08 6 A LEU 61 60.85 66.90 6 A ALA 63 63.72 -96.14 6 A LEU 65 -35.64 112.14 6 A HIS 67 47.90 81.56 6 A HIS 68 56.92 -171.43 7 A MET 2 56.68 -148.04 7 A ASP 3 63.17 176.14 7 A MET 8 -104.49 40.95 7 A GLU 9 -159.01 -29.55 7 A PRO 13 -76.05 -158.87 7 A LEU 21 -104.43 -97.40 7 A GLN 22 -92.26 35.11 7 A SER 23 54.81 17.05 7 A ALA 25 -176.39 -172.59 7 A GLN 33 -177.18 -66.80 7 A ALA 34 -176.96 108.22 7 A CYS 37 60.80 123.18 7 A GLU 38 -63.38 -110.95 7 A ASP 39 52.95 -91.58 7 A HIS 40 -168.74 36.49 7 A CYS 44 67.77 160.73 7 A PRO 45 -44.20 160.77 7 A LYS 54 -171.79 31.78 7 A GLN 59 -59.96 79.45 7 A LYS 60 175.53 -91.82 7 A HIS 67 -101.41 -79.85 7 A HIS 69 -71.53 -83.28 7 A HIS 70 -154.34 -57.42 7 A HIS 71 66.01 138.06 8 A MET 2 -109.26 -164.99 8 A LYS 5 -123.10 -160.38 8 A CYS 6 -154.53 -65.90 8 A GLU 9 -136.07 -47.87 8 A PRO 13 -78.62 -154.13 8 A GLN 22 70.43 -17.57 8 A SER 23 -73.54 26.67 8 A PHE 31 -115.18 -161.73 8 A GLN 33 64.82 125.87 8 A ALA 34 -171.17 -151.18 8 A GLU 38 57.32 -169.12 8 A HIS 40 -159.87 -48.21 8 A ILE 41 -169.11 -27.78 8 A ALA 46 55.39 -170.70 8 A GLN 53 59.89 7.44 8 A LYS 54 -104.45 -68.16 8 A GLN 59 -56.78 98.90 8 A LYS 60 55.05 -160.19 8 A LEU 61 67.02 147.44 8 A ALA 62 -153.80 -56.95 8 A ALA 63 61.25 -86.05 8 A GLU 66 -111.64 -166.87 8 A HIS 67 -87.24 -79.27 8 A HIS 68 -132.59 -55.77 8 A HIS 70 -77.71 -101.24 8 A HIS 71 -131.13 -51.20 9 A ASP 7 62.22 -159.63 9 A GLU 9 -162.15 22.61 9 A PRO 13 -78.18 -163.45 9 A LEU 21 -105.99 -98.46 9 A GLN 22 -93.96 32.42 9 A ALA 34 -141.99 -78.19 9 A CYS 36 -170.14 -24.18 9 A HIS 40 -135.10 -62.55 9 A CYS 44 58.64 101.22 9 A ALA 46 64.60 147.53 9 A ASP 51 179.87 -172.35 9 A THR 52 101.99 -35.45 9 A GLN 53 -178.44 -2.57 9 A LYS 54 -169.53 -44.84 9 A LEU 61 61.60 171.26 9 A ALA 63 65.05 140.55 9 A ALA 64 -62.85 94.71 9 A LEU 65 47.75 73.29 9 A GLU 66 -115.03 70.31 9 A HIS 67 51.70 -146.38 9 A HIS 68 -149.91 -41.94 9 A HIS 70 58.42 -172.76 9 A HIS 71 56.89 -163.67 10 A MET 8 -86.67 41.00 10 A GLU 9 -160.70 -22.09 10 A PRO 13 -78.74 -165.06 10 A LEU 21 -123.35 -96.43 10 A PRO 30 -72.53 34.54 10 A PHE 31 60.12 155.45 10 A THR 32 -176.24 28.18 10 A VAL 35 65.08 154.89 10 A CYS 36 -160.65 6.36 10 A ILE 41 -154.86 18.99 10 A HIS 42 67.05 156.00 10 A CYS 44 53.28 83.12 10 A ALA 46 61.93 147.74 10 A GLN 53 56.63 11.90 10 A GLN 59 -75.25 37.12 10 A LYS 60 169.30 -169.78 10 A ALA 63 64.77 158.43 10 A GLU 66 -69.24 -174.29 10 A HIS 67 -73.92 -167.29 10 A HIS 70 -110.80 76.79 Human Granulin A 1 N N disulf 2.031 A CYS 6 A SG CYS 6 1_555 A CYS 18 A SG CYS 18 1_555 disulf 2.033 A CYS 12 A SG CYS 12 1_555 A CYS 28 A SG CYS 28 1_555 disulf 2.029 A CYS 19 A SG CYS 19 1_555 A CYS 36 A SG CYS 36 1_555 disulf 2.029 A CYS 29 A SG CYS 29 1_555 A CYS 43 A SG CYS 43 1_555 disulf 2.034 A CYS 37 A SG CYS 37 1_555 A CYS 50 A SG CYS 50 1_555 disulf 2.026 A CYS 44 A SG CYS 44 1_555 A CYS 57 A SG CYS 57 1_555 CYTOKINE Granulin A, epithelin, human, stack of hairpins, Alternative splicing, Cytokine, Glycoprotein, Polymorphism, Secreted GRN_HUMAN UNP 1 281 P28799 DVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQ 281 337 2JYE 3 59 P28799 A 1 3 59 1 expression tag ALA 1 2JYE A P28799 UNP 1 1 expression tag MET 2 2JYE A P28799 UNP 2 1 expression tag LYS 60 2JYE A P28799 UNP 60 1 expression tag LEU 61 2JYE A P28799 UNP 61 1 expression tag ALA 62 2JYE A P28799 UNP 62 1 expression tag ALA 63 2JYE A P28799 UNP 63 1 expression tag ALA 64 2JYE A P28799 UNP 64 1 expression tag LEU 65 2JYE A P28799 UNP 65 1 expression tag GLU 66 2JYE A P28799 UNP 66 1 expression tag HIS 67 2JYE A P28799 UNP 67 1 expression tag HIS 68 2JYE A P28799 UNP 68 1 expression tag HIS 69 2JYE A P28799 UNP 69 1 expression tag HIS 70 2JYE A P28799 UNP 70 1 expression tag HIS 71 2JYE A P28799 UNP 71 1 expression tag HIS 72 2JYE A P28799 UNP 72 2 2 anti-parallel anti-parallel A TYR 16 A TYR 16 A ARG 20 A ARG 20 A TRP 26 A TRP 26 A PRO 30 A PRO 30 A CYS 50 A CYS 50 A ASP 51 A ASP 51 A THR 56 A THR 56 A CYS 57 A CYS 57