1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Tolkatchev, D.
Wang, P.
Chen, Z.
Xu, P.
Ni, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
17
711
724
10.1110/ps.073295308
18359860
Structure dissection of human progranulin identifies well-folded granulin/epithelin modules with unique functional activities.
2008
10.2210/pdb2jye/pdb
pdb_00002jye
7920.015
Granulin A
1
man
polymer
no
no
AMDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQKLAAALEHHHHHH
AMDVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQKLAAALEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
GRN
9606
Homo sapiens
562
Escherichia coli
Origami(DE3)
pET-32
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
1
0
2008-04-22
1
1
2011-07-13
1
2
2022-03-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Carp granulin-1 fragment
Human granulin A fragment
Oryzain beta fragment
BMRB
Y
RCSB
2007-12-13
REL
REL
structures with the lowest energy
60
10
2D 1H-15N HSQC
2D 1H-1H TOCSY
MJ-[1H,15N]-HSQC
2D 1H-1H NOESY
3D 1H-15N TOCSY
3D 1H-15N NOESY
2D 1H-15N HSQC
2D 1H-1H TOCSY
2D 1H-1H NOESY
10
mM
150
mM
0.2
mM
10
mM
150
mM
0.2
mM
6.8
ambient
298
K
6.8
ambient
288
K
simulated annealing
1
lowest energy
10 mM sodium phosphate, 150 mM sodium chloride, 0.2 mM EDTA, 90% H2O/10% D2O
90% H2O/10% D2O
10 mM sodium phosphate, 150 mM sodium chloride, 0.2 mM EDTA, 100% D2O
100% D2O
Linge, O'Donoghue and Nilges
structure solution
ARIA
1.0
Johnson, One Moon Scientific
chemical shift assignment
NMRView
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Tripos
data analysis
SYBYL
Accelrys Software Inc.
data analysis
Insight II
Koradi, Billeter and Wuthrich
data analysis
MOLMOL
Linge, O'Donoghue and Nilges
refinement
ARIA
1.0
800
Bruker
AVANCE
Bruker Avance
500
Bruker
AVANCE
Bruker Avance
ALA
1
n
1
ALA
1
A
MET
2
n
2
MET
2
A
ASP
3
n
3
ASP
3
A
VAL
4
n
4
VAL
4
A
LYS
5
n
5
LYS
5
A
CYS
6
n
6
CYS
6
A
ASP
7
n
7
ASP
7
A
MET
8
n
8
MET
8
A
GLU
9
n
9
GLU
9
A
VAL
10
n
10
VAL
10
A
SER
11
n
11
SER
11
A
CYS
12
n
12
CYS
12
A
PRO
13
n
13
PRO
13
A
ASP
14
n
14
ASP
14
A
GLY
15
n
15
GLY
15
A
TYR
16
n
16
TYR
16
A
THR
17
n
17
THR
17
A
CYS
18
n
18
CYS
18
A
CYS
19
n
19
CYS
19
A
ARG
20
n
20
ARG
20
A
LEU
21
n
21
LEU
21
A
GLN
22
n
22
GLN
22
A
SER
23
n
23
SER
23
A
GLY
24
n
24
GLY
24
A
ALA
25
n
25
ALA
25
A
TRP
26
n
26
TRP
26
A
GLY
27
n
27
GLY
27
A
CYS
28
n
28
CYS
28
A
CYS
29
n
29
CYS
29
A
PRO
30
n
30
PRO
30
A
PHE
31
n
31
PHE
31
A
THR
32
n
32
THR
32
A
GLN
33
n
33
GLN
33
A
ALA
34
n
34
ALA
34
A
VAL
35
n
35
VAL
35
A
CYS
36
n
36
CYS
36
A
CYS
37
n
37
CYS
37
A
GLU
38
n
38
GLU
38
A
ASP
39
n
39
ASP
39
A
HIS
40
n
40
HIS
40
A
ILE
41
n
41
ILE
41
A
HIS
42
n
42
HIS
42
A
CYS
43
n
43
CYS
43
A
CYS
44
n
44
CYS
44
A
PRO
45
n
45
PRO
45
A
ALA
46
n
46
ALA
46
A
GLY
47
n
47
GLY
47
A
PHE
48
n
48
PHE
48
A
THR
49
n
49
THR
49
A
CYS
50
n
50
CYS
50
A
ASP
51
n
51
ASP
51
A
THR
52
n
52
THR
52
A
GLN
53
n
53
GLN
53
A
LYS
54
n
54
LYS
54
A
GLY
55
n
55
GLY
55
A
THR
56
n
56
THR
56
A
CYS
57
n
57
CYS
57
A
GLU
58
n
58
GLU
58
A
GLN
59
n
59
GLN
59
A
LYS
60
n
60
LYS
60
A
LEU
61
n
61
LEU
61
A
ALA
62
n
62
ALA
62
A
ALA
63
n
63
ALA
63
A
ALA
64
n
64
ALA
64
A
LEU
65
n
65
LEU
65
A
GLU
66
n
66
GLU
66
A
HIS
67
n
67
HIS
67
A
HIS
68
n
68
HIS
68
A
HIS
69
n
69
HIS
69
A
HIS
70
n
70
HIS
70
A
HIS
71
n
71
HIS
71
A
HIS
72
n
72
HIS
72
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
19
A
N
CYS
19
A
O
GLY
27
A
O
GLY
27
A
O
ASP
51
A
O
ASP
51
A
N
THR
56
A
N
THR
56
1
A
MET
8
-92.75
46.28
1
A
GLU
9
-164.93
-1.51
1
A
SER
11
-151.35
88.88
1
A
PRO
13
-75.48
-156.59
1
A
SER
23
-73.24
25.71
1
A
GLN
33
-178.01
-157.28
1
A
ALA
34
-58.17
95.21
1
A
GLU
38
57.17
-167.97
1
A
ASP
39
-92.29
-140.63
1
A
HIS
40
62.86
-95.31
1
A
PRO
45
-69.13
34.68
1
A
ALA
46
66.29
161.40
1
A
GLN
53
57.46
14.05
1
A
GLU
58
-156.60
82.32
1
A
GLN
59
63.24
164.46
1
A
LEU
61
-141.93
-82.15
1
A
ALA
62
-166.71
-10.67
1
A
ALA
63
64.30
109.30
1
A
ALA
64
55.88
72.71
2
A
MET
2
-101.85
40.57
2
A
ASP
7
-173.70
13.69
2
A
GLU
9
-147.53
-41.44
2
A
PRO
13
-69.84
-161.95
2
A
ALA
25
-174.39
-171.87
2
A
PRO
30
-74.66
39.20
2
A
PHE
31
61.19
145.60
2
A
THR
32
-175.56
40.93
2
A
ALA
34
58.77
92.93
2
A
CYS
37
-161.23
-79.36
2
A
ASP
39
-165.43
-56.19
2
A
HIS
40
-147.41
-48.86
2
A
HIS
42
63.25
165.41
2
A
PRO
45
-73.62
36.32
2
A
ALA
46
67.02
127.22
2
A
GLN
53
58.45
13.56
2
A
GLN
59
-51.53
103.80
2
A
LYS
60
54.76
179.77
2
A
ALA
62
-124.27
-62.09
2
A
ALA
63
-139.20
-158.73
2
A
ALA
64
59.57
-95.92
2
A
LEU
65
62.57
170.60
2
A
HIS
67
-164.37
32.33
3
A
MET
2
55.55
84.22
3
A
MET
8
-87.18
38.18
3
A
GLU
9
-161.06
-35.48
3
A
PRO
13
-80.61
-156.19
3
A
LEU
21
-105.31
-87.92
3
A
ALA
34
-157.97
-62.52
3
A
CYS
36
-147.99
-74.84
3
A
CYS
37
46.38
-151.97
3
A
HIS
40
-137.48
-35.18
3
A
ILE
41
-165.23
-30.62
3
A
CYS
44
66.63
144.55
3
A
PRO
45
-62.14
-141.29
3
A
ALA
46
-52.08
-83.74
3
A
LYS
54
-173.31
36.09
3
A
LYS
60
62.09
-175.89
3
A
ALA
64
61.05
105.01
3
A
HIS
67
61.87
103.68
3
A
HIS
70
-107.39
-148.11
4
A
ASP
7
61.80
167.83
4
A
MET
8
-92.80
56.33
4
A
GLU
9
-171.67
-8.16
4
A
PRO
13
-78.96
-154.32
4
A
LEU
21
-108.36
-78.04
4
A
GLN
33
56.41
-160.89
4
A
CYS
36
-174.84
39.50
4
A
ASP
39
55.58
-161.99
4
A
HIS
40
57.21
-168.13
4
A
ILE
41
-143.01
-20.64
4
A
CYS
44
63.28
157.33
4
A
PRO
45
-57.19
-178.34
4
A
THR
52
-74.06
47.38
4
A
LYS
54
-174.07
32.17
4
A
LYS
60
64.85
-73.16
4
A
LEU
61
-57.02
-174.68
4
A
ALA
64
-165.24
77.42
4
A
LEU
65
66.78
147.51
4
A
GLU
66
-127.45
-169.42
4
A
HIS
68
-114.28
-144.85
4
A
HIS
69
63.02
-171.72
5
A
MET
2
55.49
-113.49
5
A
ASP
3
64.56
141.05
5
A
PRO
13
-66.92
-165.33
5
A
GLN
22
-172.09
-46.99
5
A
SER
23
170.25
-32.01
5
A
ALA
25
-166.59
-165.99
5
A
THR
32
-65.65
-158.79
5
A
GLN
33
-109.00
-165.51
5
A
ALA
34
69.61
86.05
5
A
HIS
40
-159.68
49.37
5
A
ILE
41
-163.09
-13.64
5
A
CYS
44
64.01
142.53
5
A
GLN
53
59.17
6.46
5
A
LYS
60
48.66
84.50
5
A
ALA
62
-160.32
2.50
5
A
ALA
63
61.12
-87.51
5
A
ALA
64
-157.42
70.71
5
A
LEU
65
54.83
81.53
5
A
GLU
66
-157.48
-59.33
6
A
MET
2
58.80
95.57
6
A
MET
8
-84.86
46.31
6
A
GLU
9
-166.85
-12.62
6
A
SER
11
-158.52
84.85
6
A
PRO
13
-73.24
-164.93
6
A
ALA
25
-176.57
-166.92
6
A
GLN
33
60.55
-169.24
6
A
VAL
35
-144.05
-66.32
6
A
CYS
36
62.87
95.36
6
A
CYS
37
-116.20
-146.10
6
A
ASP
39
62.65
166.78
6
A
PRO
45
-75.48
31.78
6
A
ALA
46
66.47
125.34
6
A
LYS
54
-153.21
17.97
6
A
GLN
59
-62.43
84.77
6
A
LYS
60
57.41
-164.08
6
A
LEU
61
60.85
66.90
6
A
ALA
63
63.72
-96.14
6
A
LEU
65
-35.64
112.14
6
A
HIS
67
47.90
81.56
6
A
HIS
68
56.92
-171.43
7
A
MET
2
56.68
-148.04
7
A
ASP
3
63.17
176.14
7
A
MET
8
-104.49
40.95
7
A
GLU
9
-159.01
-29.55
7
A
PRO
13
-76.05
-158.87
7
A
LEU
21
-104.43
-97.40
7
A
GLN
22
-92.26
35.11
7
A
SER
23
54.81
17.05
7
A
ALA
25
-176.39
-172.59
7
A
GLN
33
-177.18
-66.80
7
A
ALA
34
-176.96
108.22
7
A
CYS
37
60.80
123.18
7
A
GLU
38
-63.38
-110.95
7
A
ASP
39
52.95
-91.58
7
A
HIS
40
-168.74
36.49
7
A
CYS
44
67.77
160.73
7
A
PRO
45
-44.20
160.77
7
A
LYS
54
-171.79
31.78
7
A
GLN
59
-59.96
79.45
7
A
LYS
60
175.53
-91.82
7
A
HIS
67
-101.41
-79.85
7
A
HIS
69
-71.53
-83.28
7
A
HIS
70
-154.34
-57.42
7
A
HIS
71
66.01
138.06
8
A
MET
2
-109.26
-164.99
8
A
LYS
5
-123.10
-160.38
8
A
CYS
6
-154.53
-65.90
8
A
GLU
9
-136.07
-47.87
8
A
PRO
13
-78.62
-154.13
8
A
GLN
22
70.43
-17.57
8
A
SER
23
-73.54
26.67
8
A
PHE
31
-115.18
-161.73
8
A
GLN
33
64.82
125.87
8
A
ALA
34
-171.17
-151.18
8
A
GLU
38
57.32
-169.12
8
A
HIS
40
-159.87
-48.21
8
A
ILE
41
-169.11
-27.78
8
A
ALA
46
55.39
-170.70
8
A
GLN
53
59.89
7.44
8
A
LYS
54
-104.45
-68.16
8
A
GLN
59
-56.78
98.90
8
A
LYS
60
55.05
-160.19
8
A
LEU
61
67.02
147.44
8
A
ALA
62
-153.80
-56.95
8
A
ALA
63
61.25
-86.05
8
A
GLU
66
-111.64
-166.87
8
A
HIS
67
-87.24
-79.27
8
A
HIS
68
-132.59
-55.77
8
A
HIS
70
-77.71
-101.24
8
A
HIS
71
-131.13
-51.20
9
A
ASP
7
62.22
-159.63
9
A
GLU
9
-162.15
22.61
9
A
PRO
13
-78.18
-163.45
9
A
LEU
21
-105.99
-98.46
9
A
GLN
22
-93.96
32.42
9
A
ALA
34
-141.99
-78.19
9
A
CYS
36
-170.14
-24.18
9
A
HIS
40
-135.10
-62.55
9
A
CYS
44
58.64
101.22
9
A
ALA
46
64.60
147.53
9
A
ASP
51
179.87
-172.35
9
A
THR
52
101.99
-35.45
9
A
GLN
53
-178.44
-2.57
9
A
LYS
54
-169.53
-44.84
9
A
LEU
61
61.60
171.26
9
A
ALA
63
65.05
140.55
9
A
ALA
64
-62.85
94.71
9
A
LEU
65
47.75
73.29
9
A
GLU
66
-115.03
70.31
9
A
HIS
67
51.70
-146.38
9
A
HIS
68
-149.91
-41.94
9
A
HIS
70
58.42
-172.76
9
A
HIS
71
56.89
-163.67
10
A
MET
8
-86.67
41.00
10
A
GLU
9
-160.70
-22.09
10
A
PRO
13
-78.74
-165.06
10
A
LEU
21
-123.35
-96.43
10
A
PRO
30
-72.53
34.54
10
A
PHE
31
60.12
155.45
10
A
THR
32
-176.24
28.18
10
A
VAL
35
65.08
154.89
10
A
CYS
36
-160.65
6.36
10
A
ILE
41
-154.86
18.99
10
A
HIS
42
67.05
156.00
10
A
CYS
44
53.28
83.12
10
A
ALA
46
61.93
147.74
10
A
GLN
53
56.63
11.90
10
A
GLN
59
-75.25
37.12
10
A
LYS
60
169.30
-169.78
10
A
ALA
63
64.77
158.43
10
A
GLU
66
-69.24
-174.29
10
A
HIS
67
-73.92
-167.29
10
A
HIS
70
-110.80
76.79
Human Granulin A
1
N
N
disulf
2.031
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
18
A
SG
CYS
18
1_555
disulf
2.033
A
CYS
12
A
SG
CYS
12
1_555
A
CYS
28
A
SG
CYS
28
1_555
disulf
2.029
A
CYS
19
A
SG
CYS
19
1_555
A
CYS
36
A
SG
CYS
36
1_555
disulf
2.029
A
CYS
29
A
SG
CYS
29
1_555
A
CYS
43
A
SG
CYS
43
1_555
disulf
2.034
A
CYS
37
A
SG
CYS
37
1_555
A
CYS
50
A
SG
CYS
50
1_555
disulf
2.026
A
CYS
44
A
SG
CYS
44
1_555
A
CYS
57
A
SG
CYS
57
1_555
CYTOKINE
Granulin A, epithelin, human, stack of hairpins, Alternative splicing, Cytokine, Glycoprotein, Polymorphism, Secreted
GRN_HUMAN
UNP
1
281
P28799
DVKCDMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQ
281
337
2JYE
3
59
P28799
A
1
3
59
1
expression tag
ALA
1
2JYE
A
P28799
UNP
1
1
expression tag
MET
2
2JYE
A
P28799
UNP
2
1
expression tag
LYS
60
2JYE
A
P28799
UNP
60
1
expression tag
LEU
61
2JYE
A
P28799
UNP
61
1
expression tag
ALA
62
2JYE
A
P28799
UNP
62
1
expression tag
ALA
63
2JYE
A
P28799
UNP
63
1
expression tag
ALA
64
2JYE
A
P28799
UNP
64
1
expression tag
LEU
65
2JYE
A
P28799
UNP
65
1
expression tag
GLU
66
2JYE
A
P28799
UNP
66
1
expression tag
HIS
67
2JYE
A
P28799
UNP
67
1
expression tag
HIS
68
2JYE
A
P28799
UNP
68
1
expression tag
HIS
69
2JYE
A
P28799
UNP
69
1
expression tag
HIS
70
2JYE
A
P28799
UNP
70
1
expression tag
HIS
71
2JYE
A
P28799
UNP
71
1
expression tag
HIS
72
2JYE
A
P28799
UNP
72
2
2
anti-parallel
anti-parallel
A
TYR
16
A
TYR
16
A
ARG
20
A
ARG
20
A
TRP
26
A
TRP
26
A
PRO
30
A
PRO
30
A
CYS
50
A
CYS
50
A
ASP
51
A
ASP
51
A
THR
56
A
THR
56
A
CYS
57
A
CYS
57