1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Tolkatchev, D. Wang, P. Chen, Z. Xu, P. Ni, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 17 711 724 10.1110/ps.073295308 18359860 Structure dissection of human progranulin identifies well-folded granulin/epithelin modules with unique functional activities. 2008 10.2210/pdb2jyt/pdb pdb_00002jyt 7402.308 Granulin-5 1 man polymer Granulin C no no AMVPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQKLAAALEHHHHHH AMVPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQKLAAALEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample GRN 9606 Homo sapiens 562 Escherichia coli Origami(DE3) plasmid pET-32 database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2008-04-22 1 1 2011-07-13 1 2 2022-03-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Carp granulin-1 fragment Human granulin A fragment Oryzain beta fragment BMRB Y RCSB 2007-12-19 REL REL structures with the lowest energy 60 10 2D 1H-1H TOCSY 2D 1H-1H NOESY inphase COSY 2D 1H-1H TOCSY 2D 1H-1H NOESY 2D 1H-13C HSQC 10 mM 150 mM 0.2 mM 0.5 mM 10 mM 150 mM 0.2 mM 0.5 mM 6.8 ambient atm 298 K 6.8 ambient atm 288 K simulated annealing 1 lowest energy 10 mM sodium phosphate, 150 mM sodium chloride, 0.2 mM EDTA, 0.5-1.0 mM HgrnC1, 90% H2O/10% D2O 90% H2O/10% D2O 10 mM sodium phosphate, 150 mM sodium chloride, 0.2 mM EDTA, 0.5-1.0 mM HgrnC1, 100% D2O 100% D2O Linge, O'Donoghue and Nilges structure solution ARIA 1.0 Johnson, One Moon Scientific chemical shift assignment NMRView Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Tripos data analysis SYBYL Accelrys Software Inc. data analysis Insight II Koradi, Billeter and Wuthrich data analysis MOLMOL Linge, O'Donoghue and Nilges refinement ARIA 1.0 800 Bruker AVANCE Bruker Avance 500 Bruker AVANCE Bruker Avance n 1 -1 A n 2 0 A VAL 1 n 3 VAL 1 A PRO 2 n 4 PRO 2 A CYS 3 n 5 CYS 3 A ASP 4 n 6 ASP 4 A ASN 5 n 7 ASN 5 A VAL 6 n 8 VAL 6 A SER 7 n 9 SER 7 A SER 8 n 10 SER 8 A CYS 9 n 11 CYS 9 A PRO 10 n 12 PRO 10 A SER 11 n 13 SER 11 A SER 12 n 14 SER 12 A ASP 13 n 15 ASP 13 A THR 14 n 16 THR 14 A CYS 15 n 17 CYS 15 A CYS 16 n 18 CYS 16 A GLN 17 n 19 GLN 17 A LEU 18 n 20 LEU 18 A THR 19 n 21 THR 19 A SER 20 n 22 SER 20 A GLY 21 n 23 GLY 21 A GLU 22 n 24 GLU 22 A TRP 23 n 25 TRP 23 A GLY 24 n 26 GLY 24 A CYS 25 n 27 CYS 25 A CYS 26 n 28 CYS 26 A PRO 27 n 29 PRO 27 A ILE 28 n 30 ILE 28 A PRO 29 n 31 PRO 29 A GLU 30 n 32 GLU 30 A ALA 31 n 33 ALA 31 A VAL 32 n 34 VAL 32 A CYS 33 n 35 CYS 33 A CYS 34 n 36 CYS 34 A SER 35 n 37 SER 35 A ASP 36 n 38 ASP 36 A HIS 37 n 39 HIS 37 A GLN 38 n 40 GLN 38 A HIS 39 n 41 HIS 39 A CYS 40 n 42 CYS 40 A CYS 41 n 43 CYS 41 A PRO 42 n 44 PRO 42 A GLN 43 n 45 GLN 43 A GLY 44 n 46 GLY 44 A TYR 45 n 47 TYR 45 A THR 46 n 48 THR 46 A CYS 47 n 49 CYS 47 A VAL 48 n 50 VAL 48 A ALA 49 n 51 ALA 49 A GLU 50 n 52 GLU 50 A GLY 51 n 53 GLY 51 A GLN 52 n 54 GLN 52 A CYS 53 n 55 CYS 53 A GLN 54 n 56 GLN 54 A LYS 55 n 57 LYS 55 A n 58 56 A n 59 57 A n 60 58 A n 61 59 A n 62 60 A n 63 61 A n 64 62 A n 65 63 A n 66 64 A n 67 65 A n 68 66 A n 69 67 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 14 A N THR 16 A O CYS 26 A O CYS 28 A N THR 46 A N THR 48 A O GLN 54 A O GLN 56 1 A ALA -1 A ALA 1 1 Y 1 A MET 0 A MET 2 1 Y 1 A LEU 56 A LEU 58 1 Y 1 A ALA 57 A ALA 59 1 Y 1 A ALA 58 A ALA 60 1 Y 1 A ALA 59 A ALA 61 1 Y 1 A LEU 60 A LEU 62 1 Y 1 A GLU 61 A GLU 63 1 Y 1 A HIS 62 A HIS 64 1 Y 1 A HIS 63 A HIS 65 1 Y 1 A HIS 64 A HIS 66 1 Y 1 A HIS 65 A HIS 67 1 Y 1 A HIS 66 A HIS 68 1 Y 1 A HIS 67 A HIS 69 1 Y 2 A ALA -1 A ALA 1 1 Y 2 A MET 0 A MET 2 1 Y 2 A LEU 56 A LEU 58 1 Y 2 A ALA 57 A ALA 59 1 Y 2 A ALA 58 A ALA 60 1 Y 2 A ALA 59 A ALA 61 1 Y 2 A LEU 60 A LEU 62 1 Y 2 A GLU 61 A GLU 63 1 Y 2 A HIS 62 A HIS 64 1 Y 2 A HIS 63 A HIS 65 1 Y 2 A HIS 64 A HIS 66 1 Y 2 A HIS 65 A HIS 67 1 Y 2 A HIS 66 A HIS 68 1 Y 2 A HIS 67 A HIS 69 1 Y 3 A ALA -1 A ALA 1 1 Y 3 A MET 0 A MET 2 1 Y 3 A LEU 56 A LEU 58 1 Y 3 A ALA 57 A ALA 59 1 Y 3 A ALA 58 A ALA 60 1 Y 3 A ALA 59 A ALA 61 1 Y 3 A LEU 60 A LEU 62 1 Y 3 A GLU 61 A GLU 63 1 Y 3 A HIS 62 A HIS 64 1 Y 3 A HIS 63 A HIS 65 1 Y 3 A HIS 64 A HIS 66 1 Y 3 A HIS 65 A HIS 67 1 Y 3 A HIS 66 A HIS 68 1 Y 3 A HIS 67 A HIS 69 1 Y 4 A ALA -1 A ALA 1 1 Y 4 A MET 0 A MET 2 1 Y 4 A LEU 56 A LEU 58 1 Y 4 A ALA 57 A ALA 59 1 Y 4 A ALA 58 A ALA 60 1 Y 4 A ALA 59 A ALA 61 1 Y 4 A LEU 60 A LEU 62 1 Y 4 A GLU 61 A GLU 63 1 Y 4 A HIS 62 A HIS 64 1 Y 4 A HIS 63 A HIS 65 1 Y 4 A HIS 64 A HIS 66 1 Y 4 A HIS 65 A HIS 67 1 Y 4 A HIS 66 A HIS 68 1 Y 4 A HIS 67 A HIS 69 1 Y 5 A ALA -1 A ALA 1 1 Y 5 A MET 0 A MET 2 1 Y 5 A LEU 56 A LEU 58 1 Y 5 A ALA 57 A ALA 59 1 Y 5 A ALA 58 A ALA 60 1 Y 5 A ALA 59 A ALA 61 1 Y 5 A LEU 60 A LEU 62 1 Y 5 A GLU 61 A GLU 63 1 Y 5 A HIS 62 A HIS 64 1 Y 5 A HIS 63 A HIS 65 1 Y 5 A HIS 64 A HIS 66 1 Y 5 A HIS 65 A HIS 67 1 Y 5 A HIS 66 A HIS 68 1 Y 5 A HIS 67 A HIS 69 1 Y 6 A ALA -1 A ALA 1 1 Y 6 A MET 0 A MET 2 1 Y 6 A LEU 56 A LEU 58 1 Y 6 A ALA 57 A ALA 59 1 Y 6 A ALA 58 A ALA 60 1 Y 6 A ALA 59 A ALA 61 1 Y 6 A LEU 60 A LEU 62 1 Y 6 A GLU 61 A GLU 63 1 Y 6 A HIS 62 A HIS 64 1 Y 6 A HIS 63 A HIS 65 1 Y 6 A HIS 64 A HIS 66 1 Y 6 A HIS 65 A HIS 67 1 Y 6 A HIS 66 A HIS 68 1 Y 6 A HIS 67 A HIS 69 1 Y 7 A ALA -1 A ALA 1 1 Y 7 A MET 0 A MET 2 1 Y 7 A LEU 56 A LEU 58 1 Y 7 A ALA 57 A ALA 59 1 Y 7 A ALA 58 A ALA 60 1 Y 7 A ALA 59 A ALA 61 1 Y 7 A LEU 60 A LEU 62 1 Y 7 A GLU 61 A GLU 63 1 Y 7 A HIS 62 A HIS 64 1 Y 7 A HIS 63 A HIS 65 1 Y 7 A HIS 64 A HIS 66 1 Y 7 A HIS 65 A HIS 67 1 Y 7 A HIS 66 A HIS 68 1 Y 7 A HIS 67 A HIS 69 1 Y 8 A ALA -1 A ALA 1 1 Y 8 A MET 0 A MET 2 1 Y 8 A LEU 56 A LEU 58 1 Y 8 A ALA 57 A ALA 59 1 Y 8 A ALA 58 A ALA 60 1 Y 8 A ALA 59 A ALA 61 1 Y 8 A LEU 60 A LEU 62 1 Y 8 A GLU 61 A GLU 63 1 Y 8 A HIS 62 A HIS 64 1 Y 8 A HIS 63 A HIS 65 1 Y 8 A HIS 64 A HIS 66 1 Y 8 A HIS 65 A HIS 67 1 Y 8 A HIS 66 A HIS 68 1 Y 8 A HIS 67 A HIS 69 1 Y 9 A ALA -1 A ALA 1 1 Y 9 A MET 0 A MET 2 1 Y 9 A LEU 56 A LEU 58 1 Y 9 A ALA 57 A ALA 59 1 Y 9 A ALA 58 A ALA 60 1 Y 9 A ALA 59 A ALA 61 1 Y 9 A LEU 60 A LEU 62 1 Y 9 A GLU 61 A GLU 63 1 Y 9 A HIS 62 A HIS 64 1 Y 9 A HIS 63 A HIS 65 1 Y 9 A HIS 64 A HIS 66 1 Y 9 A HIS 65 A HIS 67 1 Y 9 A HIS 66 A HIS 68 1 Y 9 A HIS 67 A HIS 69 1 Y 10 A ALA -1 A ALA 1 1 Y 10 A MET 0 A MET 2 1 Y 10 A LEU 56 A LEU 58 1 Y 10 A ALA 57 A ALA 59 1 Y 10 A ALA 58 A ALA 60 1 Y 10 A ALA 59 A ALA 61 1 Y 10 A LEU 60 A LEU 62 1 Y 10 A GLU 61 A GLU 63 1 Y 10 A HIS 62 A HIS 64 1 Y 10 A HIS 63 A HIS 65 1 Y 10 A HIS 64 A HIS 66 1 Y 10 A HIS 65 A HIS 67 1 Y 10 A HIS 66 A HIS 68 1 Y 10 A HIS 67 A HIS 69 1 Y 1 A CYS 3 -163.89 58.36 1 A ASP 4 60.15 -175.29 1 A SER 11 56.49 -167.64 1 A LEU 18 -80.49 -142.20 1 A SER 20 64.33 118.57 1 A PRO 29 -96.49 39.94 1 A GLU 30 54.62 78.17 1 A ALA 49 59.33 12.47 2 A PRO 2 -61.04 -87.36 2 A CYS 3 55.48 -160.13 2 A ASP 4 -81.40 -96.81 2 A ASN 5 -170.98 -36.46 2 A SER 8 -162.32 105.15 2 A SER 11 56.58 -162.00 2 A SER 12 -91.45 56.40 2 A LEU 18 -80.78 -149.49 2 A SER 20 -174.76 109.41 2 A PRO 29 -96.21 41.21 2 A GLU 30 60.34 86.41 2 A SER 35 -161.18 -65.26 2 A ASP 36 -97.05 -85.98 2 A CYS 40 -61.63 85.14 2 A GLU 50 59.16 105.41 3 A ASP 4 62.89 167.03 3 A LEU 18 -107.44 -166.40 3 A THR 19 -96.50 59.34 3 A SER 20 -168.64 -48.30 3 A PRO 27 -68.30 11.33 3 A ILE 28 65.70 146.46 3 A PRO 29 -94.13 -142.18 3 A GLU 30 -65.34 87.75 3 A CYS 33 -171.62 132.33 3 A SER 35 56.67 -159.25 3 A HIS 39 -168.80 100.74 3 A ALA 49 56.02 16.33 4 A ASP 4 55.36 -162.93 4 A ASN 5 -106.90 -105.03 4 A VAL 6 60.41 -77.15 4 A THR 19 -88.50 49.14 4 A SER 20 -145.95 -49.72 4 A GLU 30 66.65 -80.19 4 A ALA 31 176.67 -174.80 4 A SER 35 56.29 -96.39 4 A GLN 38 -147.95 -33.05 4 A PRO 42 -62.50 -161.64 5 A CYS 3 57.06 -93.54 5 A ASP 4 -127.04 -69.60 5 A ASN 5 -171.44 -32.85 5 A SER 11 55.04 -160.70 5 A HIS 37 -164.39 -142.62 5 A GLN 38 -82.57 42.87 5 A HIS 39 54.28 -124.63 6 A PRO 2 -66.19 -132.14 6 A CYS 3 59.92 87.40 6 A ASP 4 54.64 -157.24 6 A ASN 5 -141.57 19.65 6 A SER 11 48.65 -148.75 6 A SER 12 -62.54 85.22 6 A ASP 13 -166.83 114.26 6 A LEU 18 -92.60 -155.13 6 A PRO 27 -46.19 -82.20 6 A ILE 28 179.51 136.25 6 A GLU 30 56.20 82.61 6 A HIS 37 63.80 -80.16 6 A GLU 50 53.20 76.33 7 A CYS 3 -169.26 -149.28 7 A SER 11 46.22 -152.03 7 A SER 12 -52.04 97.88 7 A ASP 13 -166.79 106.36 7 A ILE 28 62.09 162.12 7 A PRO 29 -88.39 -139.13 7 A GLU 30 -66.33 80.68 7 A SER 35 58.28 -96.51 7 A GLN 38 -66.46 86.71 7 A HIS 39 -170.26 93.86 7 A GLU 50 54.61 79.97 8 A CYS 3 58.33 -169.69 8 A ASP 4 57.93 -178.04 8 A ASN 5 -168.85 -27.39 8 A SER 12 -62.86 80.55 8 A ASP 13 179.58 160.15 8 A GLU 30 58.44 -107.06 8 A ALA 31 173.67 -174.88 8 A ASP 36 -162.80 -164.51 8 A HIS 37 -102.78 -153.18 8 A GLN 38 60.24 -103.67 9 A PRO 2 -51.69 171.06 9 A CYS 3 -107.53 -162.34 9 A ASP 4 60.77 -156.91 9 A SER 11 59.38 -179.07 9 A SER 12 -65.24 89.61 9 A ILE 28 44.10 109.96 9 A PRO 29 -95.34 57.51 9 A GLU 30 58.26 92.48 9 A SER 35 52.99 -158.16 9 A ASP 36 -72.40 -137.23 9 A HIS 37 61.99 -91.77 9 A HIS 39 -121.56 -57.59 9 A GLU 50 51.27 82.69 10 A PRO 2 -52.57 -72.69 10 A CYS 3 53.12 -98.20 10 A ASP 4 -125.43 -158.09 10 A PRO 29 -85.94 37.77 10 A HIS 37 -103.13 -164.74 10 A GLU 50 57.52 83.47 Human Granulin C, isomer 1 1 N N disulf 2.030 A CYS 3 A SG CYS 5 1_555 A CYS 15 A SG CYS 17 1_555 disulf 2.030 A CYS 9 A SG CYS 11 1_555 A CYS 25 A SG CYS 27 1_555 disulf 2.031 A CYS 34 A SG CYS 36 1_555 A CYS 47 A SG CYS 49 1_555 disulf 2.032 A CYS 41 A SG CYS 43 1_555 A CYS 53 A SG CYS 55 1_555 CYTOKINE Granulin C, epithelin, human, stack of hairpins, Alternative splicing, Cytokine, Glycoprotein, Polymorphism, Secreted GRN_HUMAN UNP 1 364 P28799 VPCDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQ 364 417 2JYT 1 54 P28799 A 1 3 56 1 expression tag ALA -1 2JYT A P28799 UNP 1 1 expression tag MET 0 2JYT A P28799 UNP 2 1 expression tag LYS 55 2JYT A P28799 UNP 57 1 expression tag LEU 56 2JYT A P28799 UNP 58 1 expression tag ALA 57 2JYT A P28799 UNP 59 1 expression tag ALA 58 2JYT A P28799 UNP 60 1 expression tag ALA 59 2JYT A P28799 UNP 61 1 expression tag LEU 60 2JYT A P28799 UNP 62 1 expression tag GLU 61 2JYT A P28799 UNP 63 1 expression tag HIS 62 2JYT A P28799 UNP 64 1 expression tag HIS 63 2JYT A P28799 UNP 65 1 expression tag HIS 64 2JYT A P28799 UNP 66 1 expression tag HIS 65 2JYT A P28799 UNP 67 1 expression tag HIS 66 2JYT A P28799 UNP 68 1 expression tag HIS 67 2JYT A P28799 UNP 69 2 2 anti-parallel anti-parallel A THR 14 A THR 16 A GLN 17 A GLN 19 A TRP 23 A TRP 25 A CYS 26 A CYS 28 A THR 46 A THR 48 A VAL 48 A VAL 50 A GLN 52 A GLN 54 A GLN 54 A GLN 56