1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Ramelot, T.A. Ding, K. Lee, D. Jiang, M. Ciccosanti, C. Xiao, R. Nair, R. Everett, J.K. Swapna, G. Acton, T.B. Rost, B. Montelione, G.T. Kennedy, M.A. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution NMR structure of the OB domain of Ta0387 from Thermoplasma acidophilum. 10.2210/pdb2k75/pdb pdb_00002k75 11896.184 uncharacterized protein Ta0387 residues 105-202 1 man polymer no no SDLVKIRDVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQLQDSDVVRIDNARVAQFNGYL SLSVGDSSRIESVNVNIPLEHHHHHH SDLVKIRDVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQLQDSDVVRIDNARVAQFNGYL SLSVGDSSRIESVNVNIPLEHHHHHH A TaR80b polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermoplasma acidophilum Escherichia coli sample Ta0387 2303 Thermoplasma acidophilum 562 Escherichia coli BL21(DE3) pMGK plasmid pET21-23C OB fold Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2008-08-19 1 1 2011-07-13 1 2 2022-03-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model Y BMRB Y RCSB 2008-08-01 REL REL 1313 294 526 133 360 90 0 0 65 65 structures with the least restraint violations 100 20 2.70 0.3 0.01 2D 1H-15N HSQC 2D 1H-13C HSQC 2D 1H-13C HSQC 3D 1H-15N NOESY 3D 1H-13C NOESY 3D HNCO 3D HNCA 3D HNCACB 3D CBCA(CO)NH 3D HBHA(CO)NH 3D HCCH-TOCSY 3D HCCH-COSY 3D H(CCO)NH 3D C(CO)NH 2D 1H-15N HSQC 2D 1H-13C HSQC 3D 1H-13C NOESY 4D CC NOESY 3D 1H-13C NOESY 20 mM 100 mM 10 mM 5 mM 0.02 % 1.0 mM [U-100% 13C; U-100% 15N] 20 mM 100 mM 10 mM 5 mM 0.02 % 1.3 mM [U-5% 13C; U-100% 15N] 20 mM 100 mM 10 mM 5 mM 0.02 % 1.0 mM [U-100% 13C; U-100% 15N] 100 4.5 ambient 293 K Xplor-NIH simulated annealing 1 closest to the average 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 1.0 mM [U-100% 13C; U-100% 15N] protein, 95% H2O/5% D2O 95% H2O/5% D2O 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 1.3 mM [U-5% 13C; U-100% 15N] protein, 95% H2O/5% D2O 95% H2O/5% D2O 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 1.0 mM [U-100% 13C; U-100% 15N] protein, 100% D2O 100% D2O Zimmerman, Moseley, Kulikowski and Montelione chemical shift assignment AutoAssign 2.3.0 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe linux9 Varian collection VNMR 6.1C Bruker Biospin collection TopSpin 2.1 Huang, Tejero, Powers and Montelione data analysis AutoStructure 2.2.1 Schwieters, Kuszewski, Tjandra and Clore structure solution X-PLOR NIH 2.20.0 Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 2.20.0 Goddard data analysis Sparky 3.113 Bhattacharya and Montelione structure solution PSVS 1.3 600 Varian INOVA Varian INOVA 850 Bruker AVANCE III Bruker AvanceIII SER 1 n 1 SER 1 A ASP 2 n 2 ASP 2 A LEU 3 n 3 LEU 3 A VAL 4 n 4 VAL 4 A LYS 5 n 5 LYS 5 A ILE 6 n 6 ILE 6 A ARG 7 n 7 ARG 7 A ASP 8 n 8 ASP 8 A VAL 9 n 9 VAL 9 A SER 10 n 10 SER 10 A LEU 11 n 11 LEU 11 A SER 12 n 12 SER 12 A THR 13 n 13 THR 13 A PRO 14 n 14 PRO 14 A TYR 15 n 15 TYR 15 A VAL 16 n 16 VAL 16 A SER 17 n 17 SER 17 A VAL 18 n 18 VAL 18 A ILE 19 n 19 ILE 19 A GLY 20 n 20 GLY 20 A LYS 21 n 21 LYS 21 A ILE 22 n 22 ILE 22 A THR 23 n 23 THR 23 A GLY 24 n 24 GLY 24 A ILE 25 n 25 ILE 25 A HIS 26 n 26 HIS 26 A LYS 27 n 27 LYS 27 A LYS 28 n 28 LYS 28 A GLU 29 n 29 GLU 29 A TYR 30 n 30 TYR 30 A GLU 31 n 31 GLU 31 A SER 32 n 32 SER 32 A ASP 33 n 33 ASP 33 A GLY 34 n 34 GLY 34 A THR 35 n 35 THR 35 A THR 36 n 36 THR 36 A LYS 37 n 37 LYS 37 A SER 38 n 38 SER 38 A VAL 39 n 39 VAL 39 A TYR 40 n 40 TYR 40 A GLN 41 n 41 GLN 41 A GLY 42 n 42 GLY 42 A TYR 43 n 43 TYR 43 A ILE 44 n 44 ILE 44 A GLU 45 n 45 GLU 45 A ASP 46 n 46 ASP 46 A ASP 47 n 47 ASP 47 A THR 48 n 48 THR 48 A ALA 49 n 49 ALA 49 A ARG 50 n 50 ARG 50 A ILE 51 n 51 ILE 51 A ARG 52 n 52 ARG 52 A ILE 53 n 53 ILE 53 A SER 54 n 54 SER 54 A SER 55 n 55 SER 55 A PHE 56 n 56 PHE 56 A GLY 57 n 57 GLY 57 A LYS 58 n 58 LYS 58 A GLN 59 n 59 GLN 59 A LEU 60 n 60 LEU 60 A GLN 61 n 61 GLN 61 A ASP 62 n 62 ASP 62 A SER 63 n 63 SER 63 A ASP 64 n 64 ASP 64 A VAL 65 n 65 VAL 65 A VAL 66 n 66 VAL 66 A ARG 67 n 67 ARG 67 A ILE 68 n 68 ILE 68 A ASP 69 n 69 ASP 69 A ASN 70 n 70 ASN 70 A ALA 71 n 71 ALA 71 A ARG 72 n 72 ARG 72 A VAL 73 n 73 VAL 73 A ALA 74 n 74 ALA 74 A GLN 75 n 75 GLN 75 A PHE 76 n 76 PHE 76 A ASN 77 n 77 ASN 77 A GLY 78 n 78 GLY 78 A TYR 79 n 79 TYR 79 A LEU 80 n 80 LEU 80 A SER 81 n 81 SER 81 A LEU 82 n 82 LEU 82 A SER 83 n 83 SER 83 A VAL 84 n 84 VAL 84 A GLY 85 n 85 GLY 85 A ASP 86 n 86 ASP 86 A SER 87 n 87 SER 87 A SER 88 n 88 SER 88 A ARG 89 n 89 ARG 89 A ILE 90 n 90 ILE 90 A GLU 91 n 91 GLU 91 A SER 92 n 92 SER 92 A VAL 93 n 93 VAL 93 A ASN 94 n 94 ASN 94 A VAL 95 n 95 VAL 95 A ASN 96 n 96 ASN 96 A ILE 97 n 97 ILE 97 A PRO 98 n 98 PRO 98 A LEU 99 n 99 LEU 99 A GLU 100 n 100 GLU 100 A HIS 101 n 101 HIS 101 A HIS 102 n 102 HIS 102 A HIS 103 n 103 HIS 103 A HIS 104 n 104 HIS 104 A HIS 105 n 105 HIS 105 A HIS 106 n 106 HIS 106 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLU 91 A O GLU 91 A N ARG 67 A N ARG 67 A N PHE 76 A N PHE 76 A O TYR 79 A O TYR 79 A O VAL 84 A O VAL 84 A N SER 54 A N SER 54 A O SER 55 A O SER 55 A N TYR 40 A N TYR 40 A O TYR 43 A O TYR 43 A N THR 23 A N THR 23 A N VAL 16 A N VAL 16 A O ALA 71 A O ALA 71 6 A A HD1 HD1 HIS HIS 102 103 1.28 7 A A HD1 H HIS LYS 26 27 1.30 12 A A H3 H SER ASP 1 2 1.28 15 A A HG1 H THR ALA 48 49 1.30 19 A A H3 H SER ASP 1 2 1.31 1 A ASP 46 -145.08 -148.77 1 A THR 48 -105.67 -91.11 1 A ALA 49 -133.51 -145.14 1 A PRO 98 -75.12 -78.72 1 A LEU 99 61.20 160.03 1 A GLU 100 51.68 168.11 2 A ASP 46 -168.09 95.32 2 A ASP 47 52.40 -77.61 2 A THR 48 -38.62 -80.90 2 A ALA 49 -158.21 -143.67 2 A ASN 94 -132.46 -69.15 2 A LEU 99 55.98 93.99 2 A GLU 100 -157.25 84.36 2 A HIS 101 58.60 129.03 2 A HIS 104 54.11 6.02 3 A ASP 46 -167.36 95.55 3 A ASP 47 48.37 -79.64 3 A THR 48 -36.29 -77.31 3 A ALA 49 -161.12 -153.99 3 A ASN 94 48.94 101.66 3 A LEU 99 56.69 108.24 3 A HIS 105 55.84 -112.56 4 A ASP 2 146.42 158.85 4 A ASP 46 -141.78 -153.16 4 A THR 48 -108.75 -85.80 4 A ALA 49 -135.00 -148.86 4 A SER 63 61.56 78.85 4 A ASN 96 -101.24 51.39 4 A GLU 100 58.53 -123.76 4 A HIS 101 44.48 -93.88 5 A SER 32 -144.97 -149.50 5 A ASP 33 -50.95 84.28 5 A THR 48 -107.06 -62.11 5 A ALA 49 -160.71 -151.46 5 A SER 63 45.82 78.85 5 A ASN 94 49.28 -118.65 5 A VAL 95 55.52 -0.56 5 A LEU 99 -46.33 -84.59 5 A GLU 100 42.20 93.97 5 A HIS 104 -153.43 79.31 5 A HIS 105 -174.63 37.57 6 A THR 13 -113.77 79.57 6 A SER 32 -82.83 -151.18 6 A ASP 33 -55.69 77.34 6 A ASP 46 -147.86 -157.18 6 A THR 48 -100.91 -68.64 6 A ALA 49 -159.78 -148.55 6 A SER 63 39.02 36.79 6 A ILE 97 56.52 71.64 7 A ILE 25 59.11 128.37 7 A ASP 33 -52.18 80.04 7 A THR 48 -73.22 -85.56 7 A ALA 49 -143.49 -142.26 7 A ASN 70 71.92 35.09 7 A ASN 77 -51.94 75.23 7 A VAL 95 -93.80 -85.38 7 A ILE 97 52.88 74.50 7 A LEU 99 -167.31 16.29 8 A THR 48 -101.15 -62.46 8 A ALA 49 -171.29 -150.51 8 A ASN 94 -167.83 -32.22 9 A THR 13 -114.37 79.59 9 A THR 48 -93.67 -76.35 9 A ALA 49 -145.89 -148.68 9 A ASN 94 68.72 -36.72 9 A ASN 96 -159.92 78.79 9 A LEU 99 39.11 -122.28 9 A HIS 103 -88.29 -115.06 9 A HIS 105 41.94 -100.46 10 A SER 32 -77.17 -149.50 10 A ASP 33 -54.11 75.54 10 A ASP 46 -143.12 -156.56 10 A THR 48 -94.11 -88.50 10 A ALA 49 -135.79 -146.09 10 A SER 63 51.68 80.64 10 A VAL 95 53.36 -101.97 10 A ASN 96 -162.96 88.17 10 A ILE 97 49.62 77.52 10 A HIS 104 47.78 82.64 10 A HIS 105 56.70 156.16 11 A ASP 2 -171.40 133.28 11 A ILE 25 50.01 101.79 11 A ASP 46 -141.12 -146.13 11 A THR 48 -113.42 -86.61 11 A ALA 49 -128.69 -147.72 11 A SER 63 80.31 -5.40 11 A HIS 102 44.17 73.22 11 A HIS 104 -172.08 46.49 11 A HIS 105 48.39 14.28 12 A ILE 25 58.39 119.01 12 A ASP 46 -144.99 -150.12 12 A THR 48 -103.62 -63.00 12 A ALA 49 -166.47 -149.15 12 A SER 63 37.57 42.56 12 A ASN 94 63.99 -167.47 12 A ASN 96 -102.92 -152.58 12 A LEU 99 43.27 72.87 12 A HIS 101 -46.02 97.85 12 A HIS 102 41.65 -166.88 12 A HIS 104 -171.73 50.21 13 A ASP 2 -172.94 147.70 13 A THR 13 -113.32 79.19 13 A ILE 25 56.12 107.26 13 A THR 48 -77.31 -86.90 13 A ALA 49 -142.06 -147.06 13 A SER 63 58.34 81.19 13 A VAL 95 -148.20 -139.43 13 A ASN 96 -80.83 -77.08 13 A GLU 100 -153.34 1.41 13 A HIS 104 51.18 9.23 14 A ILE 25 57.91 120.61 14 A ASP 47 13.72 57.94 14 A THR 48 -168.70 -55.60 14 A ALA 49 -173.39 -167.93 14 A ASN 77 67.89 -63.23 14 A VAL 95 -83.36 -77.01 14 A ILE 97 42.39 76.86 14 A HIS 102 -57.30 -76.01 14 A HIS 104 42.99 -111.52 15 A THR 48 -94.72 -71.31 15 A ALA 49 -162.22 -141.13 15 A VAL 95 -63.38 -110.52 15 A HIS 101 -154.70 -69.44 15 A HIS 103 43.97 -167.54 16 A SER 32 -81.27 -156.50 16 A ASP 33 -48.28 82.67 16 A THR 48 -92.94 -73.82 16 A ALA 49 -154.15 -157.00 16 A SER 63 47.16 81.47 16 A ASN 96 42.69 -167.86 16 A HIS 103 -163.79 -53.03 17 A ASP 46 -143.67 -144.33 17 A THR 48 -101.23 -69.69 17 A ALA 49 -162.86 -148.20 17 A ASN 94 -173.74 -29.09 17 A VAL 95 54.51 162.53 17 A ASN 96 60.09 104.01 17 A ILE 97 34.69 59.08 17 A LEU 99 59.25 124.17 17 A HIS 101 41.36 -91.19 17 A HIS 102 45.84 89.50 17 A HIS 103 -76.73 -160.58 17 A HIS 104 57.65 92.54 18 A ASP 46 -146.16 -142.28 18 A THR 48 -91.04 -76.61 18 A ALA 49 -149.11 -148.47 18 A SER 63 48.79 80.64 18 A GLU 100 -148.64 -22.56 18 A HIS 102 -150.37 36.72 18 A HIS 103 -153.17 -61.28 18 A HIS 105 41.24 -163.25 19 A ASP 2 -173.66 140.02 19 A SER 32 -77.90 -151.70 19 A ASP 33 -54.60 75.59 19 A ASP 46 -144.41 -147.63 19 A THR 48 -108.31 -66.18 19 A ALA 49 -157.56 -147.55 19 A SER 63 66.32 78.84 19 A ASN 77 -36.98 -18.39 19 A ILE 97 30.74 78.57 19 A HIS 102 44.13 -173.04 19 A HIS 104 -165.64 -74.13 20 A SER 32 -84.31 -151.68 20 A ASP 33 -50.43 84.35 20 A THR 48 -90.00 -73.96 20 A ALA 49 -158.50 -144.68 20 A ASN 94 -134.99 -57.80 20 A ASN 96 58.31 128.77 20 A LEU 99 58.21 136.98 20 A HIS 104 55.72 159.65 OB fold Solution NMR structure of the OB domain of Ta0387 from Thermoplasma acidophilum. Northeast Structural Genomics Consortium target TaR80b. 1 N N DNA BINDING PROTEIN closed beta barrel, OB fold, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, unknown function, DNA BINDING PROTEIN Q9HL44_THEAC UNP 1 105 Q9HL44 SDLVKIRDVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQLQDSDVVRIDNARVAQFNGYL SLSVGDSSRIESVNVNIP 105 202 2K75 1 98 Q9HL44 A 1 1 98 1 expression tag LEU 99 2K75 A Q9HL44 UNP 99 1 expression tag GLU 100 2K75 A Q9HL44 UNP 100 1 expression tag HIS 101 2K75 A Q9HL44 UNP 101 1 expression tag HIS 102 2K75 A Q9HL44 UNP 102 1 expression tag HIS 103 2K75 A Q9HL44 UNP 103 1 expression tag HIS 104 2K75 A Q9HL44 UNP 104 1 expression tag HIS 105 2K75 A Q9HL44 UNP 105 1 expression tag HIS 106 2K75 A Q9HL44 UNP 106 7 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A ARG 89 A ARG 89 A SER 92 A SER 92 A ASP 64 A ASP 64 A PHE 76 A PHE 76 A TYR 79 A TYR 79 A VAL 84 A VAL 84 A ARG 50 A ARG 50 A PHE 56 A PHE 56 A THR 35 A THR 35 A GLU 45 A GLU 45 A TYR 15 A TYR 15 A SER 32 A SER 32 A ASP 64 A ASP 64 A PHE 76 A PHE 76