1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Ramelot, T.A.
Ding, K.
Lee, D.
Jiang, M.
Ciccosanti, C.
Xiao, R.
Nair, R.
Everett, J.K.
Swapna, G.
Acton, T.B.
Rost, B.
Montelione, G.T.
Kennedy, M.A.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Solution NMR structure of the OB domain of Ta0387 from Thermoplasma acidophilum.
10.2210/pdb2k75/pdb
pdb_00002k75
11896.184
uncharacterized protein Ta0387
residues 105-202
1
man
polymer
no
no
SDLVKIRDVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQLQDSDVVRIDNARVAQFNGYL
SLSVGDSSRIESVNVNIPLEHHHHHH
SDLVKIRDVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQLQDSDVVRIDNARVAQFNGYL
SLSVGDSSRIESVNVNIPLEHHHHHH
A
TaR80b
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermoplasma
acidophilum
Escherichia
coli
sample
Ta0387
2303
Thermoplasma acidophilum
562
Escherichia coli
BL21(DE3) pMGK
plasmid
pET21-23C
OB fold
Northeast Structural Genomics Consortium
NESG
PSI, Protein Structure Initiative
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
1
0
2008-08-19
1
1
2011-07-13
1
2
2022-03-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
Y
BMRB
Y
RCSB
2008-08-01
REL
REL
1313
294
526
133
360
90
0
0
65
65
structures with the least restraint violations
100
20
2.70
0.3
0.01
2D 1H-15N HSQC
2D 1H-13C HSQC
2D 1H-13C HSQC
3D 1H-15N NOESY
3D 1H-13C NOESY
3D HNCO
3D HNCA
3D HNCACB
3D CBCA(CO)NH
3D HBHA(CO)NH
3D HCCH-TOCSY
3D HCCH-COSY
3D H(CCO)NH
3D C(CO)NH
2D 1H-15N HSQC
2D 1H-13C HSQC
3D 1H-13C NOESY
4D CC NOESY
3D 1H-13C NOESY
20
mM
100
mM
10
mM
5
mM
0.02
%
1.0
mM
[U-100% 13C; U-100% 15N]
20
mM
100
mM
10
mM
5
mM
0.02
%
1.3
mM
[U-5% 13C; U-100% 15N]
20
mM
100
mM
10
mM
5
mM
0.02
%
1.0
mM
[U-100% 13C; U-100% 15N]
100
4.5
ambient
293
K
Xplor-NIH
simulated annealing
1
closest to the average
20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 1.0 mM [U-100% 13C; U-100% 15N] protein, 95% H2O/5% D2O
95% H2O/5% D2O
20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 1.3 mM [U-5% 13C; U-100% 15N] protein, 95% H2O/5% D2O
95% H2O/5% D2O
20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 1.0 mM [U-100% 13C; U-100% 15N] protein, 100% D2O
100% D2O
Zimmerman, Moseley, Kulikowski and Montelione
chemical shift assignment
AutoAssign
2.3.0
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
linux9
Varian
collection
VNMR
6.1C
Bruker Biospin
collection
TopSpin
2.1
Huang, Tejero, Powers and Montelione
data analysis
AutoStructure
2.2.1
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
2.20.0
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
2.20.0
Goddard
data analysis
Sparky
3.113
Bhattacharya and Montelione
structure solution
PSVS
1.3
600
Varian
INOVA
Varian INOVA
850
Bruker
AVANCE III
Bruker AvanceIII
SER
1
n
1
SER
1
A
ASP
2
n
2
ASP
2
A
LEU
3
n
3
LEU
3
A
VAL
4
n
4
VAL
4
A
LYS
5
n
5
LYS
5
A
ILE
6
n
6
ILE
6
A
ARG
7
n
7
ARG
7
A
ASP
8
n
8
ASP
8
A
VAL
9
n
9
VAL
9
A
SER
10
n
10
SER
10
A
LEU
11
n
11
LEU
11
A
SER
12
n
12
SER
12
A
THR
13
n
13
THR
13
A
PRO
14
n
14
PRO
14
A
TYR
15
n
15
TYR
15
A
VAL
16
n
16
VAL
16
A
SER
17
n
17
SER
17
A
VAL
18
n
18
VAL
18
A
ILE
19
n
19
ILE
19
A
GLY
20
n
20
GLY
20
A
LYS
21
n
21
LYS
21
A
ILE
22
n
22
ILE
22
A
THR
23
n
23
THR
23
A
GLY
24
n
24
GLY
24
A
ILE
25
n
25
ILE
25
A
HIS
26
n
26
HIS
26
A
LYS
27
n
27
LYS
27
A
LYS
28
n
28
LYS
28
A
GLU
29
n
29
GLU
29
A
TYR
30
n
30
TYR
30
A
GLU
31
n
31
GLU
31
A
SER
32
n
32
SER
32
A
ASP
33
n
33
ASP
33
A
GLY
34
n
34
GLY
34
A
THR
35
n
35
THR
35
A
THR
36
n
36
THR
36
A
LYS
37
n
37
LYS
37
A
SER
38
n
38
SER
38
A
VAL
39
n
39
VAL
39
A
TYR
40
n
40
TYR
40
A
GLN
41
n
41
GLN
41
A
GLY
42
n
42
GLY
42
A
TYR
43
n
43
TYR
43
A
ILE
44
n
44
ILE
44
A
GLU
45
n
45
GLU
45
A
ASP
46
n
46
ASP
46
A
ASP
47
n
47
ASP
47
A
THR
48
n
48
THR
48
A
ALA
49
n
49
ALA
49
A
ARG
50
n
50
ARG
50
A
ILE
51
n
51
ILE
51
A
ARG
52
n
52
ARG
52
A
ILE
53
n
53
ILE
53
A
SER
54
n
54
SER
54
A
SER
55
n
55
SER
55
A
PHE
56
n
56
PHE
56
A
GLY
57
n
57
GLY
57
A
LYS
58
n
58
LYS
58
A
GLN
59
n
59
GLN
59
A
LEU
60
n
60
LEU
60
A
GLN
61
n
61
GLN
61
A
ASP
62
n
62
ASP
62
A
SER
63
n
63
SER
63
A
ASP
64
n
64
ASP
64
A
VAL
65
n
65
VAL
65
A
VAL
66
n
66
VAL
66
A
ARG
67
n
67
ARG
67
A
ILE
68
n
68
ILE
68
A
ASP
69
n
69
ASP
69
A
ASN
70
n
70
ASN
70
A
ALA
71
n
71
ALA
71
A
ARG
72
n
72
ARG
72
A
VAL
73
n
73
VAL
73
A
ALA
74
n
74
ALA
74
A
GLN
75
n
75
GLN
75
A
PHE
76
n
76
PHE
76
A
ASN
77
n
77
ASN
77
A
GLY
78
n
78
GLY
78
A
TYR
79
n
79
TYR
79
A
LEU
80
n
80
LEU
80
A
SER
81
n
81
SER
81
A
LEU
82
n
82
LEU
82
A
SER
83
n
83
SER
83
A
VAL
84
n
84
VAL
84
A
GLY
85
n
85
GLY
85
A
ASP
86
n
86
ASP
86
A
SER
87
n
87
SER
87
A
SER
88
n
88
SER
88
A
ARG
89
n
89
ARG
89
A
ILE
90
n
90
ILE
90
A
GLU
91
n
91
GLU
91
A
SER
92
n
92
SER
92
A
VAL
93
n
93
VAL
93
A
ASN
94
n
94
ASN
94
A
VAL
95
n
95
VAL
95
A
ASN
96
n
96
ASN
96
A
ILE
97
n
97
ILE
97
A
PRO
98
n
98
PRO
98
A
LEU
99
n
99
LEU
99
A
GLU
100
n
100
GLU
100
A
HIS
101
n
101
HIS
101
A
HIS
102
n
102
HIS
102
A
HIS
103
n
103
HIS
103
A
HIS
104
n
104
HIS
104
A
HIS
105
n
105
HIS
105
A
HIS
106
n
106
HIS
106
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
91
A
O
GLU
91
A
N
ARG
67
A
N
ARG
67
A
N
PHE
76
A
N
PHE
76
A
O
TYR
79
A
O
TYR
79
A
O
VAL
84
A
O
VAL
84
A
N
SER
54
A
N
SER
54
A
O
SER
55
A
O
SER
55
A
N
TYR
40
A
N
TYR
40
A
O
TYR
43
A
O
TYR
43
A
N
THR
23
A
N
THR
23
A
N
VAL
16
A
N
VAL
16
A
O
ALA
71
A
O
ALA
71
6
A
A
HD1
HD1
HIS
HIS
102
103
1.28
7
A
A
HD1
H
HIS
LYS
26
27
1.30
12
A
A
H3
H
SER
ASP
1
2
1.28
15
A
A
HG1
H
THR
ALA
48
49
1.30
19
A
A
H3
H
SER
ASP
1
2
1.31
1
A
ASP
46
-145.08
-148.77
1
A
THR
48
-105.67
-91.11
1
A
ALA
49
-133.51
-145.14
1
A
PRO
98
-75.12
-78.72
1
A
LEU
99
61.20
160.03
1
A
GLU
100
51.68
168.11
2
A
ASP
46
-168.09
95.32
2
A
ASP
47
52.40
-77.61
2
A
THR
48
-38.62
-80.90
2
A
ALA
49
-158.21
-143.67
2
A
ASN
94
-132.46
-69.15
2
A
LEU
99
55.98
93.99
2
A
GLU
100
-157.25
84.36
2
A
HIS
101
58.60
129.03
2
A
HIS
104
54.11
6.02
3
A
ASP
46
-167.36
95.55
3
A
ASP
47
48.37
-79.64
3
A
THR
48
-36.29
-77.31
3
A
ALA
49
-161.12
-153.99
3
A
ASN
94
48.94
101.66
3
A
LEU
99
56.69
108.24
3
A
HIS
105
55.84
-112.56
4
A
ASP
2
146.42
158.85
4
A
ASP
46
-141.78
-153.16
4
A
THR
48
-108.75
-85.80
4
A
ALA
49
-135.00
-148.86
4
A
SER
63
61.56
78.85
4
A
ASN
96
-101.24
51.39
4
A
GLU
100
58.53
-123.76
4
A
HIS
101
44.48
-93.88
5
A
SER
32
-144.97
-149.50
5
A
ASP
33
-50.95
84.28
5
A
THR
48
-107.06
-62.11
5
A
ALA
49
-160.71
-151.46
5
A
SER
63
45.82
78.85
5
A
ASN
94
49.28
-118.65
5
A
VAL
95
55.52
-0.56
5
A
LEU
99
-46.33
-84.59
5
A
GLU
100
42.20
93.97
5
A
HIS
104
-153.43
79.31
5
A
HIS
105
-174.63
37.57
6
A
THR
13
-113.77
79.57
6
A
SER
32
-82.83
-151.18
6
A
ASP
33
-55.69
77.34
6
A
ASP
46
-147.86
-157.18
6
A
THR
48
-100.91
-68.64
6
A
ALA
49
-159.78
-148.55
6
A
SER
63
39.02
36.79
6
A
ILE
97
56.52
71.64
7
A
ILE
25
59.11
128.37
7
A
ASP
33
-52.18
80.04
7
A
THR
48
-73.22
-85.56
7
A
ALA
49
-143.49
-142.26
7
A
ASN
70
71.92
35.09
7
A
ASN
77
-51.94
75.23
7
A
VAL
95
-93.80
-85.38
7
A
ILE
97
52.88
74.50
7
A
LEU
99
-167.31
16.29
8
A
THR
48
-101.15
-62.46
8
A
ALA
49
-171.29
-150.51
8
A
ASN
94
-167.83
-32.22
9
A
THR
13
-114.37
79.59
9
A
THR
48
-93.67
-76.35
9
A
ALA
49
-145.89
-148.68
9
A
ASN
94
68.72
-36.72
9
A
ASN
96
-159.92
78.79
9
A
LEU
99
39.11
-122.28
9
A
HIS
103
-88.29
-115.06
9
A
HIS
105
41.94
-100.46
10
A
SER
32
-77.17
-149.50
10
A
ASP
33
-54.11
75.54
10
A
ASP
46
-143.12
-156.56
10
A
THR
48
-94.11
-88.50
10
A
ALA
49
-135.79
-146.09
10
A
SER
63
51.68
80.64
10
A
VAL
95
53.36
-101.97
10
A
ASN
96
-162.96
88.17
10
A
ILE
97
49.62
77.52
10
A
HIS
104
47.78
82.64
10
A
HIS
105
56.70
156.16
11
A
ASP
2
-171.40
133.28
11
A
ILE
25
50.01
101.79
11
A
ASP
46
-141.12
-146.13
11
A
THR
48
-113.42
-86.61
11
A
ALA
49
-128.69
-147.72
11
A
SER
63
80.31
-5.40
11
A
HIS
102
44.17
73.22
11
A
HIS
104
-172.08
46.49
11
A
HIS
105
48.39
14.28
12
A
ILE
25
58.39
119.01
12
A
ASP
46
-144.99
-150.12
12
A
THR
48
-103.62
-63.00
12
A
ALA
49
-166.47
-149.15
12
A
SER
63
37.57
42.56
12
A
ASN
94
63.99
-167.47
12
A
ASN
96
-102.92
-152.58
12
A
LEU
99
43.27
72.87
12
A
HIS
101
-46.02
97.85
12
A
HIS
102
41.65
-166.88
12
A
HIS
104
-171.73
50.21
13
A
ASP
2
-172.94
147.70
13
A
THR
13
-113.32
79.19
13
A
ILE
25
56.12
107.26
13
A
THR
48
-77.31
-86.90
13
A
ALA
49
-142.06
-147.06
13
A
SER
63
58.34
81.19
13
A
VAL
95
-148.20
-139.43
13
A
ASN
96
-80.83
-77.08
13
A
GLU
100
-153.34
1.41
13
A
HIS
104
51.18
9.23
14
A
ILE
25
57.91
120.61
14
A
ASP
47
13.72
57.94
14
A
THR
48
-168.70
-55.60
14
A
ALA
49
-173.39
-167.93
14
A
ASN
77
67.89
-63.23
14
A
VAL
95
-83.36
-77.01
14
A
ILE
97
42.39
76.86
14
A
HIS
102
-57.30
-76.01
14
A
HIS
104
42.99
-111.52
15
A
THR
48
-94.72
-71.31
15
A
ALA
49
-162.22
-141.13
15
A
VAL
95
-63.38
-110.52
15
A
HIS
101
-154.70
-69.44
15
A
HIS
103
43.97
-167.54
16
A
SER
32
-81.27
-156.50
16
A
ASP
33
-48.28
82.67
16
A
THR
48
-92.94
-73.82
16
A
ALA
49
-154.15
-157.00
16
A
SER
63
47.16
81.47
16
A
ASN
96
42.69
-167.86
16
A
HIS
103
-163.79
-53.03
17
A
ASP
46
-143.67
-144.33
17
A
THR
48
-101.23
-69.69
17
A
ALA
49
-162.86
-148.20
17
A
ASN
94
-173.74
-29.09
17
A
VAL
95
54.51
162.53
17
A
ASN
96
60.09
104.01
17
A
ILE
97
34.69
59.08
17
A
LEU
99
59.25
124.17
17
A
HIS
101
41.36
-91.19
17
A
HIS
102
45.84
89.50
17
A
HIS
103
-76.73
-160.58
17
A
HIS
104
57.65
92.54
18
A
ASP
46
-146.16
-142.28
18
A
THR
48
-91.04
-76.61
18
A
ALA
49
-149.11
-148.47
18
A
SER
63
48.79
80.64
18
A
GLU
100
-148.64
-22.56
18
A
HIS
102
-150.37
36.72
18
A
HIS
103
-153.17
-61.28
18
A
HIS
105
41.24
-163.25
19
A
ASP
2
-173.66
140.02
19
A
SER
32
-77.90
-151.70
19
A
ASP
33
-54.60
75.59
19
A
ASP
46
-144.41
-147.63
19
A
THR
48
-108.31
-66.18
19
A
ALA
49
-157.56
-147.55
19
A
SER
63
66.32
78.84
19
A
ASN
77
-36.98
-18.39
19
A
ILE
97
30.74
78.57
19
A
HIS
102
44.13
-173.04
19
A
HIS
104
-165.64
-74.13
20
A
SER
32
-84.31
-151.68
20
A
ASP
33
-50.43
84.35
20
A
THR
48
-90.00
-73.96
20
A
ALA
49
-158.50
-144.68
20
A
ASN
94
-134.99
-57.80
20
A
ASN
96
58.31
128.77
20
A
LEU
99
58.21
136.98
20
A
HIS
104
55.72
159.65
OB fold
Solution NMR structure of the OB domain of Ta0387 from Thermoplasma acidophilum. Northeast Structural Genomics Consortium target TaR80b.
1
N
N
DNA BINDING PROTEIN
closed beta barrel, OB fold, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, unknown function, DNA BINDING PROTEIN
Q9HL44_THEAC
UNP
1
105
Q9HL44
SDLVKIRDVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQLQDSDVVRIDNARVAQFNGYL
SLSVGDSSRIESVNVNIP
105
202
2K75
1
98
Q9HL44
A
1
1
98
1
expression tag
LEU
99
2K75
A
Q9HL44
UNP
99
1
expression tag
GLU
100
2K75
A
Q9HL44
UNP
100
1
expression tag
HIS
101
2K75
A
Q9HL44
UNP
101
1
expression tag
HIS
102
2K75
A
Q9HL44
UNP
102
1
expression tag
HIS
103
2K75
A
Q9HL44
UNP
103
1
expression tag
HIS
104
2K75
A
Q9HL44
UNP
104
1
expression tag
HIS
105
2K75
A
Q9HL44
UNP
105
1
expression tag
HIS
106
2K75
A
Q9HL44
UNP
106
7
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
89
A
ARG
89
A
SER
92
A
SER
92
A
ASP
64
A
ASP
64
A
PHE
76
A
PHE
76
A
TYR
79
A
TYR
79
A
VAL
84
A
VAL
84
A
ARG
50
A
ARG
50
A
PHE
56
A
PHE
56
A
THR
35
A
THR
35
A
GLU
45
A
GLU
45
A
TYR
15
A
TYR
15
A
SER
32
A
SER
32
A
ASP
64
A
ASP
64
A
PHE
76
A
PHE
76