1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Philippe, D.L.
Ladbury, J.E.
Pfuhl, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Solution structure of the Sh3-C domain of Cin85
8479.498
SH3 domain-containing kinase-binding protein 1
SH3 domain C, UNP residues 262-333
1
man
polymer
Cbl-interacting protein of 85 kDa, Human Src family kinase-binding protein 1, HSB-1, CD2-binding protein 3, CD2BP3
no
no
SMDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKE
SMDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
CIN85, SH3KBP1
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
BL21(DE3)star
plasmid
pLEICS-01
repository
Initial release
Version format compliance
1
0
2009-10-13
1
1
2011-07-13
BMRB
Y
PDBJ
2008-10-10
REL
REL
structures with the lowest energy
100
20
1
2D 1H-15N HSQC
2D 1H-13C HSQC
2D 1H-1H TOCSY
2D 1H-1H NOESY
3D HNCACB
3D CBCA(CO)NH
3D HNCA
3D HNCO
3D HCACO
3D HBHA(CO)NH
3D HCCH-TOCSY
3D C(CO)NH
3D HBHANH
3D 1H-15N NOESY
3D 1H-13C NOESY
2D 1H-13C TROSY
1
mM
20
mM
100
mM
1
mM
1
mM
0.02
%
1
mM
[U-98% 13C; U-98% 15N]
20
mM
100
mM
1
mM
1
mM
0.02
%
1
mM
[U-99% 15N]
20
mM
100
mM
1
mM
1
mM
0.02
%
1
mM
[U-99% 13C; U-99% 15N]
20
mM
100
mM
1
mM
1
mM
0.02
%
140
6.4
ambient
298
K
distance geometry
1
fewest violations
1mM Cin85 SH3-C, 20mM sodium phosphate, 100mM sodium chloride, 1mM DTT, 1mM EDTA, 0.02% sodium azide, 90% H2O/10% D2O
90% H2O/10% D2O
1mM [U-98% 13C; U-98% 15N] Cin85 SH3-C, 20mM sodium phosphate, 100mM sodium chloride, 1mM DTT, 1mM EDTA, 0.02% sodium azide, 100% D2O
100% D2O
1mM [U-99% 15N] Cin85 SH3-C, 20mM sodium phosphate, 100mM sodium chloride, 1mM DTT, 1mM EDTA, 0.02% sodium azide, 90% H2O/10% D2O
90% H2O/10% D2O
1mM [U-99% 13C; U-99% 15N] Cin85 SH3-C, 20mM sodium phosphate, 100mM sodium chloride, 1mM DTT, 1mM EDTA, 0.02% sodium azide, 90% H2O/10% D2O
90% H2O/10% D2O
Bruker Biospin
collection
TOPSPIN
1.3 to 2.1
Bruker Biospin
processing
TOPSPIN
1.3 to 2.1
CCPN
peak picking
Analysis
1.0.15
CCPN
chemical shift assignment
Analysis
1.0.15
CCPN
data analysis
Analysis
1.0.15
Cornilescu, Delaglio, Bax
data analysis
TALOS
Guntert, Mumenthaler, Wuthrich
structure solution
CYANA
Bhattacharya, Montelione
data analysis
PSVS
Vriend
data analysis
WhatIF
Guntert, Mumenthaler, Wuthrich
refinement
CYANA
500
Bruker
DRX
Bruker DRX
600
Bruker
DRX
Bruker DRX
600
Bruker
Avance
Bruker Avance
800
Bruker
Avance
Bruker Avance
SER
261
n
1
SER
261
A
MET
262
n
2
MET
262
A
ASP
263
n
3
ASP
263
A
SER
264
n
4
SER
264
A
ARG
265
n
5
ARG
265
A
THR
266
n
6
THR
266
A
LYS
267
n
7
LYS
267
A
SER
268
n
8
SER
268
A
LYS
269
n
9
LYS
269
A
ASP
270
n
10
ASP
270
A
TYR
271
n
11
TYR
271
A
CYS
272
n
12
CYS
272
A
LYS
273
n
13
LYS
273
A
VAL
274
n
14
VAL
274
A
ILE
275
n
15
ILE
275
A
PHE
276
n
16
PHE
276
A
PRO
277
n
17
PRO
277
A
TYR
278
n
18
TYR
278
A
GLU
279
n
19
GLU
279
A
ALA
280
n
20
ALA
280
A
GLN
281
n
21
GLN
281
A
ASN
282
n
22
ASN
282
A
ASP
283
n
23
ASP
283
A
ASP
284
n
24
ASP
284
A
GLU
285
n
25
GLU
285
A
LEU
286
n
26
LEU
286
A
THR
287
n
27
THR
287
A
ILE
288
n
28
ILE
288
A
LYS
289
n
29
LYS
289
A
GLU
290
n
30
GLU
290
A
GLY
291
n
31
GLY
291
A
ASP
292
n
32
ASP
292
A
ILE
293
n
33
ILE
293
A
VAL
294
n
34
VAL
294
A
THR
295
n
35
THR
295
A
LEU
296
n
36
LEU
296
A
ILE
297
n
37
ILE
297
A
ASN
298
n
38
ASN
298
A
LYS
299
n
39
LYS
299
A
ASP
300
n
40
ASP
300
A
CYS
301
n
41
CYS
301
A
ILE
302
n
42
ILE
302
A
ASP
303
n
43
ASP
303
A
VAL
304
n
44
VAL
304
A
GLY
305
n
45
GLY
305
A
TRP
306
n
46
TRP
306
A
TRP
307
n
47
TRP
307
A
GLU
308
n
48
GLU
308
A
GLY
309
n
49
GLY
309
A
GLU
310
n
50
GLU
310
A
LEU
311
n
51
LEU
311
A
ASN
312
n
52
ASN
312
A
GLY
313
n
53
GLY
313
A
ARG
314
n
54
ARG
314
A
ARG
315
n
55
ARG
315
A
GLY
316
n
56
GLY
316
A
VAL
317
n
57
VAL
317
A
PHE
318
n
58
PHE
318
A
PRO
319
n
59
PRO
319
A
ASP
320
n
60
ASP
320
A
ASN
321
n
61
ASN
321
A
PHE
322
n
62
PHE
322
A
VAL
323
n
63
VAL
323
A
LYS
324
n
64
LYS
324
A
LEU
325
n
65
LEU
325
A
LEU
326
n
66
LEU
326
A
PRO
327
n
67
PRO
327
A
PRO
328
n
68
PRO
328
A
ASP
329
n
69
ASP
329
A
PHE
330
n
70
PHE
330
A
GLU
331
n
71
GLU
331
A
LYS
332
n
72
LYS
332
A
GLU
333
n
73
GLU
333
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
318
A
O
PHE
58
A
N
TRP
307
A
N
TRP
47
A
O
GLU
308
A
O
GLU
48
A
N
ASN
298
A
N
ASN
38
A
O
VAL
294
A
O
VAL
34
A
N
CYS
272
A
N
CYS
12
A
N
LYS
273
A
N
LYS
13
A
O
LYS
324
A
O
LYS
64
1
A
TYR
278
-176.10
110.39
2
A
ASP
263
-105.49
-65.16
2
A
TYR
278
-173.95
107.42
2
A
ASP
300
-49.92
162.31
2
A
LYS
332
-95.23
-66.14
3
A
ASP
263
-170.21
135.44
3
A
SER
268
-141.13
29.67
3
A
LYS
269
-56.52
176.29
3
A
TYR
278
-173.68
107.96
3
A
ASP
300
-49.74
165.79
4
A
SER
264
-99.67
57.43
4
A
TYR
278
-173.29
109.78
5
A
SER
268
-163.75
109.20
5
A
TYR
278
-170.80
112.22
5
A
ASP
300
-49.77
162.01
6
A
TYR
278
-174.43
107.32
6
A
ASP
300
-49.60
160.15
7
A
TYR
278
-173.43
108.32
7
A
ASN
282
-175.54
-178.47
7
A
ASP
300
-49.94
165.25
8
A
SER
268
-95.61
55.45
8
A
TYR
278
-174.38
113.51
8
A
ASP
300
-56.04
179.78
8
A
CYS
301
-129.05
-69.53
9
A
MET
262
39.44
41.71
9
A
TYR
278
-172.81
106.02
9
A
ASP
300
-49.90
161.77
10
A
LYS
267
-56.65
178.20
10
A
TYR
278
-174.59
108.63
11
A
ASP
263
-116.95
63.52
11
A
TYR
278
-171.17
106.06
11
A
ASP
300
-49.98
160.49
11
A
LYS
332
-91.70
-74.39
12
A
LYS
269
-58.13
176.85
12
A
TYR
278
-172.92
111.74
12
A
ASP
300
-56.00
179.76
12
A
CYS
301
-128.99
-69.41
13
A
SER
268
-90.62
49.83
13
A
TYR
278
-166.41
111.47
13
A
ASP
300
-49.68
160.78
13
A
LYS
332
-70.87
-74.00
14
A
THR
266
-96.23
-72.99
14
A
TYR
278
-174.16
109.64
14
A
ASP
300
-55.49
178.61
14
A
CYS
301
-128.04
-69.36
14
A
LYS
332
-86.48
-74.47
15
A
ARG
265
-55.84
105.33
15
A
SER
268
-144.88
28.18
15
A
TYR
278
-174.38
105.96
15
A
LYS
332
-60.92
-73.73
16
A
THR
266
-60.62
-73.52
16
A
TYR
278
-174.45
140.43
16
A
ASP
300
-55.08
177.50
16
A
CYS
301
-126.46
-69.33
17
A
TYR
278
-172.76
110.02
18
A
MET
262
-118.49
65.38
18
A
TYR
278
-171.48
105.95
18
A
ASP
300
-49.77
162.43
19
A
TYR
278
-174.87
111.92
19
A
ASP
300
-49.80
166.60
19
A
LYS
332
-82.87
-72.12
20
A
TYR
278
-172.41
108.21
20
A
ASP
300
-49.66
161.74
SH3 domain-containing kinase-binding protein 1
Solution structure of the third SH3 domain of the Cin85 adapter protein
1
N
N
SIGNALING PROTEIN
Cin85, SH3, adaptor protein, downregulation, cbl, Apoptosis, Cell junction, Cytoplasmic vesicle, Cytoskeleton, Endocytosis, Membrane, Phosphoprotein, SH3 domain, SH3-binding, Synapse, Synaptosome, SIGNALING PROTEIN
SH3K1_HUMAN
UNP
1
262
Q96B97
MDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFEKE
262
333
2K9G
262
333
Q96B97
A
1
2
73
1
EXPRESSION TAG
SER
261
2K9G
A
Q96B97
UNP
1
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
314
A
ARG
54
A
PRO
319
A
PRO
59
A
TRP
306
A
TRP
46
A
LEU
311
A
LEU
51
A
ILE
293
A
ILE
33
A
ASN
298
A
ASN
38
A
ASP
270
A
ASP
10
A
VAL
274
A
VAL
14
A
VAL
323
A
VAL
63
A
LEU
325
A
LEU
65
1
P 1