1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Rodgers, M.E.
Schleif, R.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
77
202
208
10.1002/prot.22431
19422057
Solution structure of the DNA binding domain of AraC protein.
2009
10.2210/pdb2k9s/pdb
pdb_00002k9s
12096.711
Arabinose operon regulatory protein
DNA binding domain
1
man
polymer
no
no
MDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVG
FDDQLYFSRVFKKCTGASPSEFRAGCE
MDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVG
FDDQLYFSRVFKKCTGASPSEFRAGCE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K-12
sample
araC, b0064, JW0063
83333
Escherichia coli
562
Escherichia coli
BL21(DE3)
pET24d
plasmid
pdbx_database_status
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
database_2
pdbx_database_status
repository
Initial release
Version format compliance
Data collection
Derived calculations
Other
Database references
Other
1
0
2008-11-25
1
1
2011-07-13
1
2
2020-02-19
1
3
2023-06-14
_pdbx_database_status.status_code_cs
_pdbx_nmr_spectrometer.model
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
homolog MarA
homolog Rob
BMRB
Y
RCSB
2008-10-23
REL
REL
REL
REL
structures with the least restraint violations
100
20
3D_13C-SEPARATED_ALI_NOESY
3D_13C-SEPARATED_ARO_NOESY
3D 1H-15N-SEPARATED NOESY
2D 1H-15N HSQC
2D 1H-13C HSQC
3D HNCO
3D HNCA
3D HNCACB
3D HN(CO)CA
3D CBCA(CO)NH
3D HCCH-COSY
3D HCCCONH-TOCSY
3D H_CCCONH-TOCSY
0.5-1.0
mM
[U-100% 15N]
0.5-1.0
mM
[U-100% 13C; U-100% 15N]
400
6.0
1
atm
298
K
torsion angle dynamics
1
closest to the average
0.5-1.0 mM [U-100% 15N] AraC-DBD, 90% H2O/10% D2O
90% H2O/10% D2O
0.5-1.0 mM [U-100% 13C; U-100% 15N] AraC-DBD, 100% D2O
100% D2O
P.GUNTERT ET AL.
refinement
CYANA
2.0
Herrmann, Guntert and Wuthrich
structure solution
ATNOS-CANDID
Cornilescu, Delaglio and Bax
structure solution
TALOS
800
Varian
INOVA
VARIAN INOVA
600
Bruker
AVANCE
Bruker Avance
500
Varian
INOVA
Varian INOVA
600
Varian
INOVA
Varian INOVA
MET
1
n
1
MET
1
A
ASP
2
n
2
ASP
2
A
ASN
3
n
3
ASN
3
A
ARG
4
n
4
ARG
4
A
VAL
5
n
5
VAL
5
A
ARG
6
n
6
ARG
6
A
GLU
7
n
7
GLU
7
A
ALA
8
n
8
ALA
8
A
CYS
9
n
9
CYS
9
A
GLN
10
n
10
GLN
10
A
TYR
11
n
11
TYR
11
A
ILE
12
n
12
ILE
12
A
SER
13
n
13
SER
13
A
ASP
14
n
14
ASP
14
A
HIS
15
n
15
HIS
15
A
LEU
16
n
16
LEU
16
A
ALA
17
n
17
ALA
17
A
ASP
18
n
18
ASP
18
A
SER
19
n
19
SER
19
A
ASN
20
n
20
ASN
20
A
PHE
21
n
21
PHE
21
A
ASP
22
n
22
ASP
22
A
ILE
23
n
23
ILE
23
A
ALA
24
n
24
ALA
24
A
SER
25
n
25
SER
25
A
VAL
26
n
26
VAL
26
A
ALA
27
n
27
ALA
27
A
GLN
28
n
28
GLN
28
A
HIS
29
n
29
HIS
29
A
VAL
30
n
30
VAL
30
A
CYS
31
n
31
CYS
31
A
LEU
32
n
32
LEU
32
A
SER
33
n
33
SER
33
A
PRO
34
n
34
PRO
34
A
SER
35
n
35
SER
35
A
ARG
36
n
36
ARG
36
A
LEU
37
n
37
LEU
37
A
SER
38
n
38
SER
38
A
HIS
39
n
39
HIS
39
A
LEU
40
n
40
LEU
40
A
PHE
41
n
41
PHE
41
A
ARG
42
n
42
ARG
42
A
GLN
43
n
43
GLN
43
A
GLN
44
n
44
GLN
44
A
LEU
45
n
45
LEU
45
A
GLY
46
n
46
GLY
46
A
ILE
47
n
47
ILE
47
A
SER
48
n
48
SER
48
A
VAL
49
n
49
VAL
49
A
LEU
50
n
50
LEU
50
A
SER
51
n
51
SER
51
A
TRP
52
n
52
TRP
52
A
ARG
53
n
53
ARG
53
A
GLU
54
n
54
GLU
54
A
ASP
55
n
55
ASP
55
A
GLN
56
n
56
GLN
56
A
ARG
57
n
57
ARG
57
A
ILE
58
n
58
ILE
58
A
SER
59
n
59
SER
59
A
GLN
60
n
60
GLN
60
A
ALA
61
n
61
ALA
61
A
LYS
62
n
62
LYS
62
A
LEU
63
n
63
LEU
63
A
LEU
64
n
64
LEU
64
A
LEU
65
n
65
LEU
65
A
SER
66
n
66
SER
66
A
THR
67
n
67
THR
67
A
THR
68
n
68
THR
68
A
ARG
69
n
69
ARG
69
A
MET
70
n
70
MET
70
A
PRO
71
n
71
PRO
71
A
ILE
72
n
72
ILE
72
A
ALA
73
n
73
ALA
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
GLY
76
n
76
GLY
76
A
ARG
77
n
77
ARG
77
A
ASN
78
n
78
ASN
78
A
VAL
79
n
79
VAL
79
A
GLY
80
n
80
GLY
80
A
PHE
81
n
81
PHE
81
A
ASP
82
n
82
ASP
82
A
ASP
83
n
83
ASP
83
A
GLN
84
n
84
GLN
84
A
LEU
85
n
85
LEU
85
A
TYR
86
n
86
TYR
86
A
PHE
87
n
87
PHE
87
A
SER
88
n
88
SER
88
A
ARG
89
n
89
ARG
89
A
VAL
90
n
90
VAL
90
A
PHE
91
n
91
PHE
91
A
LYS
92
n
92
LYS
92
A
LYS
93
n
93
LYS
93
A
CYS
94
n
94
CYS
94
A
THR
95
n
95
THR
95
A
GLY
96
n
96
GLY
96
A
ALA
97
n
97
ALA
97
A
SER
98
n
98
SER
98
A
PRO
99
n
99
PRO
99
A
SER
100
n
100
SER
100
A
GLU
101
n
101
GLU
101
A
PHE
102
n
102
PHE
102
A
ARG
103
n
103
ARG
103
A
ALA
104
n
104
ALA
104
A
GLY
105
n
105
GLY
105
A
CYS
106
n
106
CYS
106
A
GLU
107
n
107
GLU
107
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
Solution structure of dna binding domain of E. coli arac
1
N
N
A
ASP
2
A
ASP
2
HELX_P
A
HIS
15
A
HIS
15
1
1
14
A
ASP
22
A
ASP
22
HELX_P
A
VAL
30
A
VAL
30
1
2
9
A
SER
33
A
SER
33
HELX_P
A
GLY
46
A
GLY
46
1
3
14
A
SER
48
A
SER
48
HELX_P
A
THR
68
A
THR
68
1
4
21
A
PRO
71
A
PRO
71
HELX_P
A
VAL
79
A
VAL
79
1
5
9
A
ASP
83
A
ASP
83
HELX_P
A
GLY
96
A
GLY
96
1
6
14
A
SER
98
A
SER
98
HELX_P
A
GLY
105
A
GLY
105
1
7
8
TRANSCRIPTION
Activator, Arabinose catabolism, Carbohydrate metabolism, Cytoplasm, DNA-binding, Repressor, Transcription, Transcription regulation
ARAC_ECOLI
UNP
1
175
P0A9E0
MDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVG
FDDQLYFSRVFKKCTGASPSEFRAGCE
175
281
2K9S
1
107
P0A9E0
A
1
1
107