1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Eletsky, A.
Wu, Y.
Sukumaran, D.
Lee, H.
Lee, D.Y.
Jiang, M.
Foote, E.L.
Xiao, R.
Nair, R.
Everett, J.K.
Swapna, G.V.T.
Acton, T.B.
Rost, B.
Montelione, G.T.
Prestegard, J.H.
Szyperski, T.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Solution NMR structure of Bacteroides fragilis protein BF1650. Northeast Structural Genomics Consortium target BfR218
10.2210/pdb2kc7/pdb
pdb_00002kc7
11658.081
bfr218_protein
1
man
polymer
no
no
MDQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDI
LNFYNKDMYNQLEHHHHHH
MDQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDI
LNFYNKDMYNQLEHHHHHH
A
BfR218
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
BF1650
817
Bacteroides fragilis
562
Escherichia coli
BL21(DE3)+ Magic
plasmid
pET 21-23C
Northeast Structural Genomics Consortium
NESG
PSI, Protein Structure Initiative
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
1
0
2009-01-13
1
1
2011-07-13
1
2
2022-03-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
Y
BMRB
Y
RCSB
2008-12-17
REL
REL
2343
473
631
763
567
200
0
0
63
63
target function
100
20
0.329
2D 1H-15N HSQC
2D 1H-13C HSQC ali
2D 1H-13C HSQC aro
2D 1H-13C CT-HSQC ali
2D 1H-13C CT-HSQC aro
3D HNNCO
(4,3)D GFT CABCA(CO)NHN
(4,3)D GFT HNNCABCA
(4,3)D HABCAB(CO)NHN
(4,3)D GFT HCCH-COSY ali
(4,3)D GFT HCCH-COSY aro
3D (H)CCH-TOCSY ali
3D HN(CA)CO
3D 1H-15N,13C NOESY
2D 1H-13C CT-HSQC ali 28ms
2D MEXICO
2D 1H-15N HSQC
2D 1H-15N TROSY
2D 1H-15N HSQC
2D 1H-15N TROSY
20
mM
200
mM
5
mM
10
mM
50
uM
0.02
%
%
0.89
mM
[U-100% 13C; U-100% 15N]
20
mM
200
mM
5
mM
10
mM
50
uM
0.02
%
%
1
mM
[U-5% 13C; U-100% 15N]
20
mM
200
mM
5
mM
10
mM
50
uM
0.02
%
%
1
mM
[U-5% 13C; U-100% 15N]
25
%
215
6.5
ambient
298
K
In explicit "water bath"
simulated annealing
1
lowest energy
20 mM MES-1, 200 mM sodium chloride-2, 5 mM calcium chloride-3, 10 mM DTT-4, 50 uM DSS-5, 0.02 % sodium azide-6, 1 X protease inhibitiors-7, 0.89 mM [U-100% 13C; U-100% 15N] bfr218 protein-8, 90% H2O/10% D2O
90% H2O/10% D2O
20 mM MES-9, 200 mM sodium chloride-10, 5 mM calcium chloride-11, 10 mM DTT-12, 50 uM DSS-13, 0.02 % sodium azide-14, 1 X protease inhibitiors-15, 1 mM [U-5% 13C; U-100% 15N] bfr218 protein-16, 90% H2O/10% D2O
90% H2O/10% D2O
20 mM MES-17, 200 mM sodium chloride-18, 5 mM calcium chloride-19, 10 mM DTT-20, 50 uM DSS-21, 0.02 % sodium azide-22, 1 X protease inhibitiors-23, 1 mM [U-5% 13C; U-100% 15N] bfr218 protein-24, 2.65 G/L PF1 PHAGE-25, 90% H2O/10% D2O
90% H2O/10% D2O
Varian
collection
VnmrJ
2.1B
Guntert
processing
PROSA
6.0.2
Keller and Wuthrich
data analysis
CARA
1.8.4.2
Keller and Wuthrich
chemical shift assignment
CARA
1.8.4.2
Keller and Wuthrich
peak picking
CARA
1.8.4.2
Zimmerman, Moseley, Kulikowski and Montelione
chemical shift assignment
AutoAssign
2.3.0
Cornilescu, Delaglio and Bax
data analysis
TALOS
2007.068.09.07
Huang, Tejero, Powers and Montelione
structure solution
AutoStructure
2.2.1
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
3.0
Brunger, Adams, Clore, Gros, Nilges and Read
refinement
CNS
1.2.1
Bhattacharya and Montelione
structure validation
PSVS
1.3
750
Varian
INOVA
Varian INOVA
600
Varian
INOVA
Varian INOVA
600
Varian
INOVA
Varian INOVA
500
Varian
INOVA
Varian INOVA
MET
1
n
1
MET
1
A
ASP
2
n
2
ASP
2
A
GLN
3
n
3
GLN
3
A
LEU
4
n
4
LEU
4
A
LYS
5
n
5
LYS
5
A
THR
6
n
6
THR
6
A
ILE
7
n
7
ILE
7
A
LYS
8
n
8
LYS
8
A
GLU
9
n
9
GLU
9
A
LEU
10
n
10
LEU
10
A
ILE
11
n
11
ILE
11
A
ASN
12
n
12
ASN
12
A
GLN
13
n
13
GLN
13
A
GLY
14
n
14
GLY
14
A
ASP
15
n
15
ASP
15
A
ILE
16
n
16
ILE
16
A
GLU
17
n
17
GLU
17
A
ASN
18
n
18
ASN
18
A
ALA
19
n
19
ALA
19
A
LEU
20
n
20
LEU
20
A
GLN
21
n
21
GLN
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
GLU
24
n
24
GLU
24
A
GLU
25
n
25
GLU
25
A
PHE
26
n
26
PHE
26
A
LEU
27
n
27
LEU
27
A
GLN
28
n
28
GLN
28
A
THR
29
n
29
THR
29
A
GLU
30
n
30
GLU
30
A
PRO
31
n
31
PRO
31
A
VAL
32
n
32
VAL
32
A
GLY
33
n
33
GLY
33
A
LYS
34
n
34
LYS
34
A
ASP
35
n
35
ASP
35
A
GLU
36
n
36
GLU
36
A
ALA
37
n
37
ALA
37
A
TYR
38
n
38
TYR
38
A
TYR
39
n
39
TYR
39
A
LEU
40
n
40
LEU
40
A
MET
41
n
41
MET
41
A
GLY
42
n
42
GLY
42
A
ASN
43
n
43
ASN
43
A
ALA
44
n
44
ALA
44
A
TYR
45
n
45
TYR
45
A
ARG
46
n
46
ARG
46
A
LYS
47
n
47
LYS
47
A
LEU
48
n
48
LEU
48
A
GLY
49
n
49
GLY
49
A
ASP
50
n
50
ASP
50
A
TRP
51
n
51
TRP
51
A
GLN
52
n
52
GLN
52
A
LYS
53
n
53
LYS
53
A
ALA
54
n
54
ALA
54
A
LEU
55
n
55
LEU
55
A
ASN
56
n
56
ASN
56
A
ASN
57
n
57
ASN
57
A
TYR
58
n
58
TYR
58
A
GLN
59
n
59
GLN
59
A
SER
60
n
60
SER
60
A
ALA
61
n
61
ALA
61
A
ILE
62
n
62
ILE
62
A
GLU
63
n
63
GLU
63
A
LEU
64
n
64
LEU
64
A
ASN
65
n
65
ASN
65
A
PRO
66
n
66
PRO
66
A
ASP
67
n
67
ASP
67
A
SER
68
n
68
SER
68
A
PRO
69
n
69
PRO
69
A
ALA
70
n
70
ALA
70
A
LEU
71
n
71
LEU
71
A
GLN
72
n
72
GLN
72
A
ALA
73
n
73
ALA
73
A
ARG
74
n
74
ARG
74
A
LYS
75
n
75
LYS
75
A
MET
76
n
76
MET
76
A
VAL
77
n
77
VAL
77
A
MET
78
n
78
MET
78
A
ASP
79
n
79
ASP
79
A
ILE
80
n
80
ILE
80
A
LEU
81
n
81
LEU
81
A
ASN
82
n
82
ASN
82
A
PHE
83
n
83
PHE
83
A
TYR
84
n
84
TYR
84
A
ASN
85
n
85
ASN
85
A
LYS
86
n
86
LYS
86
A
ASP
87
n
87
ASP
87
A
MET
88
n
88
MET
88
A
TYR
89
n
89
TYR
89
A
ASN
90
n
90
ASN
90
A
GLN
91
n
91
GLN
91
A
LEU
92
n
92
LEU
92
A
GLU
93
n
93
GLU
93
A
HIS
94
n
94
HIS
94
A
HIS
95
n
95
HIS
95
A
HIS
96
n
96
HIS
96
A
HIS
97
n
97
HIS
97
A
HIS
98
n
98
HIS
98
A
HIS
99
n
99
HIS
99
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
5
A
A
HA
HE3
PRO
LYS
31
34
1.33
11
A
A
HG23
HB1
ILE
ALA
16
44
1.34
17
A
A
HA
HE3
PRO
LYS
31
34
1.21
18
A
A
HE21
HD1
GLN
PHE
3
26
1.34
1
A
ASP
15
-90.77
48.33
1
A
TYR
84
-75.64
-77.50
2
A
THR
29
-94.15
-72.71
2
A
HIS
95
-115.17
74.71
4
A
TYR
84
-80.73
-73.21
4
A
ASP
87
-78.01
-73.78
4
A
HIS
94
-103.20
66.38
5
A
PRO
69
-68.16
1.90
5
A
TYR
84
-56.76
-76.06
5
A
ASN
85
-134.46
-39.07
6
A
ASP
2
-81.94
49.10
6
A
THR
29
-97.42
-68.57
6
A
ASP
67
-89.09
32.89
6
A
TYR
84
-76.14
-76.40
6
A
HIS
96
-175.58
111.45
7
A
TYR
84
-69.26
-76.15
8
A
ASP
67
-93.91
56.63
9
A
HIS
97
-66.50
89.85
10
A
GLU
30
-160.25
97.92
10
A
PRO
69
-69.17
2.27
10
A
TYR
84
-73.52
-72.31
11
A
TYR
84
-74.84
-76.41
11
A
ASN
90
73.05
-9.01
11
A
HIS
94
-87.85
-92.70
12
A
TYR
84
-96.85
-68.19
12
A
ASN
90
80.50
-11.18
13
A
ASP
2
-67.00
99.01
13
A
TYR
84
-84.48
-91.02
13
A
HIS
96
-72.87
-85.84
13
A
HIS
97
-175.43
-177.49
14
A
TYR
84
-62.90
-71.08
14
A
ASP
87
-129.16
-73.93
14
A
ASN
90
169.03
-56.50
15
A
ASP
2
-171.82
105.18
15
A
TYR
84
-71.19
-91.89
16
A
ASP
67
-86.48
32.48
16
A
TYR
84
-74.66
-73.90
16
A
HIS
97
-157.87
85.39
20
A
TYR
84
-86.61
-75.24
20
A
ASN
90
75.00
-1.24
lowest energy, model 1
Solution NMR structure of Bacteroides fragilis protein BF1650. Northeast Structural Genomics Consortium target BfR218
1
N
N
A
GLN
3
A
GLN
3
HELX_P
A
GLY
14
A
GLY
14
1
1
12
A
ASP
15
A
ASP
15
HELX_P
A
GLU
30
A
GLU
30
1
2
16
A
GLY
33
A
GLY
33
HELX_P
A
GLY
49
A
GLY
49
1
3
17
A
ASP
50
A
ASP
50
HELX_P
A
ASN
65
A
ASN
65
1
4
16
A
PRO
69
A
PRO
69
HELX_P
A
ASN
85
A
ASN
85
1
5
17
A
MET
88
A
MET
88
HELX_P
A
GLU
93
A
GLU
93
1
6
6
structural genomics, unknown function
tetratricopeptide repeat, all-alpha, GFT-NMR, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, unknown function
Q64VS8_BACFR
UNP
1
1
Q64VS8
MDQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDI
LNFYNKDMYNQ
1
91
2KC7
1
91
Q64VS8
A
1
1
91
1
expression tag
LEU
92
2KC7
A
Q64VS8
UNP
92
1
expression tag
GLU
93
2KC7
A
Q64VS8
UNP
93
1
expression tag
HIS
94
2KC7
A
Q64VS8
UNP
94
1
expression tag
HIS
95
2KC7
A
Q64VS8
UNP
95
1
expression tag
HIS
96
2KC7
A
Q64VS8
UNP
96
1
expression tag
HIS
97
2KC7
A
Q64VS8
UNP
97
1
expression tag
HIS
98
2KC7
A
Q64VS8
UNP
98
1
expression tag
HIS
99
2KC7
A
Q64VS8
UNP
99