1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Gallopin, M.
Gilquin, B.
Zinn-Justin, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
106
8507
8512
10.1073/pnas.0812407106
19433794
Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating.
2009
10.2210/pdb2kca/pdb
pdb_00002kca
12615.069
Bacteriophage SPP1 complete nucleotide sequence
P40R
1
man
polymer
no
no
MYEEFRDVITFQSYVEQSNGEGGKTYKWVDEFTAAAHVQPISQEEYYKAQQLQTPIGYNIYTPYDDRIDKKMRVIYRGKI
VTFIGDPVDLSGLQEITRIKGKEDGAYVG
MYEEFRDVITFQSYVEQSNGEGGKTYKWVDEFTAAAHVQPISQEEYYKAQQLQTPIGYNIYTPYDDRIDKKMRVIYRGKI
VTFIGDPVDLSGLQEITRIKGKEDGAYVG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacteriophage SPP1
sample
10724
Bacillus phage SPP1
562
Escherichia coli
BL21
DE3
pLysS
database_2
pdbx_nmr_software
struct_ref_seq_dif
repository
Initial release
Version format compliance
Structure summary
Data collection
Database references
1
0
2009-06-02
1
1
2011-07-13
1
2
2016-08-17
1
3
2021-10-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
BMRB
Y
RCSB
2008-12-18
REL
REL
structures with the lowest energy
6000
20
1H-2H exchange experiments
3D HNHA
2D 1H-15N HSQC
3D 1H-15N NOESY
1H-15N nOe transfer
3D HNCO
3D HNCA
3D HNCACO
3D HNCACB
3D CBCA(CO)NH
3D HBHA(CO)NH
3D HCCH-COSY
3D HCCH-TOCSY
3D 1H-13C NOESY
HNCACB
HNCACO
HNCOCACB
0.35
mM
5
mM
300
mM
0.35
mM
[U-100% 15N]
5
mM
300
mM
0.35
mM
[U-100% 13C; U-100% 15N]
5
mM
300
mM
0.35
mM
[U-100% 13C; U-100% 15N; U-80% 2H]
5
mM
300
mM
0.3
7.5
ambient
atm
298
K
molecular dynamics
1
lowest energy
0.35 mM gp16-1, 5 mM HEPES-2, 300 mM sodium chloride-3, 90% H2O/10% D2O
90% H2O/10% D2O
0.35 mM [U-100% 15N] gp16-4, 5 mM HEPES-5, 300 mM sodium chloride-6, 90% H2O/10% D2O
90% H2O/10% D2O
0.35 mM [U-100% 13C; U-100% 15N] gp16-7, 5 mM HEPES-8, 300 mM sodium chloride-9, 90% H2O/10% D2O
90% H2O/10% D2O
0.35 mM [U-100% 13C; U-100% 15N; U-80% 2H] gp16-10, 5 mM HEPES-11, 300 mM sodium chloride-12, 90% H2O/10% D2O
90% H2O/10% D2O
Goddard
peak picking
Sparky
Brunger, Adams, Clore, Gros, Nilges and Read
structure solution
CNS
Bernard Gilquin
chemical shift assignment
INCA
Brunger, Adams, Clore, Gros, Nilges and Read
refinement
CNS
600
Bruker
Avance 2
Bruker Avance 2
700
Bruker
Avance 2
Bruker Avance 2
MET
35
n
1
MET
35
A
TYR
36
n
2
TYR
36
A
GLU
37
n
3
GLU
37
A
GLU
38
n
4
GLU
38
A
PHE
39
n
5
PHE
39
A
ARG
40
n
6
ARG
40
A
ASP
41
n
7
ASP
41
A
VAL
42
n
8
VAL
42
A
ILE
43
n
9
ILE
43
A
THR
44
n
10
THR
44
A
PHE
45
n
11
PHE
45
A
GLN
46
n
12
GLN
46
A
SER
47
n
13
SER
47
A
TYR
48
n
14
TYR
48
A
VAL
49
n
15
VAL
49
A
GLU
50
n
16
GLU
50
A
GLN
51
n
17
GLN
51
A
SER
52
n
18
SER
52
A
ASN
53
n
19
ASN
53
A
GLY
54
n
20
GLY
54
A
GLU
55
n
21
GLU
55
A
GLY
56
n
22
GLY
56
A
GLY
57
n
23
GLY
57
A
LYS
58
n
24
LYS
58
A
THR
59
n
25
THR
59
A
TYR
60
n
26
TYR
60
A
LYS
61
n
27
LYS
61
A
TRP
62
n
28
TRP
62
A
VAL
63
n
29
VAL
63
A
ASP
64
n
30
ASP
64
A
GLU
65
n
31
GLU
65
A
PHE
66
n
32
PHE
66
A
THR
67
n
33
THR
67
A
ALA
68
n
34
ALA
68
A
ALA
69
n
35
ALA
69
A
ALA
70
n
36
ALA
70
A
HIS
71
n
37
HIS
71
A
VAL
72
n
38
VAL
72
A
GLN
73
n
39
GLN
73
A
PRO
74
n
40
PRO
74
A
ILE
75
n
41
ILE
75
A
SER
76
n
42
SER
76
A
GLN
77
n
43
GLN
77
A
GLU
78
n
44
GLU
78
A
GLU
79
n
45
GLU
79
A
TYR
80
n
46
TYR
80
A
TYR
81
n
47
TYR
81
A
LYS
82
n
48
LYS
82
A
ALA
83
n
49
ALA
83
A
GLN
84
n
50
GLN
84
A
GLN
85
n
51
GLN
85
A
LEU
86
n
52
LEU
86
A
GLN
87
n
53
GLN
87
A
THR
88
n
54
THR
88
A
PRO
89
n
55
PRO
89
A
ILE
90
n
56
ILE
90
A
GLY
91
n
57
GLY
91
A
TYR
92
n
58
TYR
92
A
ASN
93
n
59
ASN
93
A
ILE
94
n
60
ILE
94
A
TYR
95
n
61
TYR
95
A
THR
96
n
62
THR
96
A
PRO
97
n
63
PRO
97
A
TYR
98
n
64
TYR
98
A
ASP
99
n
65
ASP
99
A
ASP
100
n
66
ASP
100
A
ARG
101
n
67
ARG
101
A
ILE
102
n
68
ILE
102
A
ASP
103
n
69
ASP
103
A
LYS
104
n
70
LYS
104
A
LYS
105
n
71
LYS
105
A
MET
106
n
72
MET
106
A
ARG
107
n
73
ARG
107
A
VAL
108
n
74
VAL
108
A
ILE
109
n
75
ILE
109
A
TYR
110
n
76
TYR
110
A
ARG
111
n
77
ARG
111
A
GLY
112
n
78
GLY
112
A
LYS
113
n
79
LYS
113
A
ILE
114
n
80
ILE
114
A
VAL
115
n
81
VAL
115
A
THR
116
n
82
THR
116
A
PHE
117
n
83
PHE
117
A
ILE
118
n
84
ILE
118
A
GLY
119
n
85
GLY
119
A
ASP
120
n
86
ASP
120
A
PRO
121
n
87
PRO
121
A
VAL
122
n
88
VAL
122
A
ASP
123
n
89
ASP
123
A
LEU
124
n
90
LEU
124
A
SER
125
n
91
SER
125
A
GLY
126
n
92
GLY
126
A
LEU
127
n
93
LEU
127
A
GLN
128
n
94
GLN
128
A
GLU
129
n
95
GLU
129
A
ILE
130
n
96
ILE
130
A
THR
131
n
97
THR
131
A
ARG
132
n
98
ARG
132
A
ILE
133
n
99
ILE
133
A
LYS
134
n
100
LYS
134
A
GLY
135
n
101
GLY
135
A
LYS
136
n
102
LYS
136
A
GLU
137
n
103
GLU
137
A
ASP
138
n
104
ASP
138
A
GLY
139
n
105
GLY
139
A
ALA
140
n
106
ALA
140
A
TYR
141
n
107
TYR
141
A
VAL
142
n
108
VAL
142
A
GLY
143
n
109
GLY
143
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
SER
47
A
N
SER
13
A
O
VAL
63
A
O
VAL
29
A
N
GLN
73
A
N
GLN
39
A
O
ASN
93
A
O
ASN
59
A
N
ILE
94
A
N
ILE
60
A
O
ILE
133
A
O
ILE
99
A
O
ARG
132
A
O
ARG
98
A
N
VAL
122
A
N
VAL
88
A
O
LYS
113
A
O
LYS
79
A
N
TYR
110
A
N
TYR
76
A
O
ILE
109
A
O
ILE
75
A
N
THR
44
A
N
THR
10
1
A
A
HH
OE1
TYR
GLN
98
128
1.59
2
A
A
HH
O
TYR
GLN
81
85
1.59
6
A
A
HH
OD1
TYR
ASN
80
93
1.58
10
A
A
O
HH
GLY
TYR
57
60
1.57
11
A
A
O
HG1
VAL
THR
115
116
1.54
12
A
A
OD1
HG1
ASN
THR
53
59
1.59
13
A
A
OE1
HH
GLN
TYR
84
92
1.54
15
A
A
O
HG1
ASP
THR
99
131
1.58
19
A
A
O
HG1
ALA
THR
83
88
1.57
20
A
A
O
HH
GLU
TYR
38
95
1.57
20
A
A
HG
OD1
SER
ASN
76
93
1.59
1
A
TYR
36
0.086
SIDE CHAIN
1
A
TYR
95
0.148
SIDE CHAIN
1
A
TYR
110
0.221
SIDE CHAIN
2
A
TYR
92
0.140
SIDE CHAIN
2
A
TYR
95
0.128
SIDE CHAIN
3
A
TYR
60
0.080
SIDE CHAIN
3
A
TYR
80
0.082
SIDE CHAIN
3
A
TYR
92
0.086
SIDE CHAIN
3
A
TYR
110
0.166
SIDE CHAIN
4
A
TYR
110
0.076
SIDE CHAIN
5
A
TYR
81
0.095
SIDE CHAIN
5
A
TYR
95
0.109
SIDE CHAIN
6
A
TYR
60
0.092
SIDE CHAIN
6
A
TYR
95
0.089
SIDE CHAIN
6
A
TYR
110
0.101
SIDE CHAIN
7
A
TYR
80
0.069
SIDE CHAIN
7
A
TYR
81
0.079
SIDE CHAIN
7
A
TYR
92
0.066
SIDE CHAIN
7
A
TYR
95
0.143
SIDE CHAIN
9
A
TYR
60
0.081
SIDE CHAIN
9
A
TYR
92
0.099
SIDE CHAIN
9
A
TYR
95
0.084
SIDE CHAIN
10
A
TYR
60
0.091
SIDE CHAIN
10
A
TYR
92
0.070
SIDE CHAIN
10
A
TYR
95
0.075
SIDE CHAIN
11
A
TYR
60
0.079
SIDE CHAIN
11
A
TYR
110
0.159
SIDE CHAIN
12
A
PHE
66
0.095
SIDE CHAIN
12
A
ARG
101
0.125
SIDE CHAIN
12
A
TYR
110
0.076
SIDE CHAIN
13
A
TYR
95
0.109
SIDE CHAIN
13
A
TYR
110
0.179
SIDE CHAIN
14
A
TYR
92
0.113
SIDE CHAIN
14
A
TYR
95
0.133
SIDE CHAIN
15
A
PHE
66
0.112
SIDE CHAIN
15
A
TYR
92
0.162
SIDE CHAIN
16
A
PHE
117
0.078
SIDE CHAIN
17
A
TYR
92
0.107
SIDE CHAIN
18
A
PHE
66
0.079
SIDE CHAIN
19
A
PHE
66
0.100
SIDE CHAIN
19
A
TYR
95
0.075
SIDE CHAIN
20
A
TYR
95
0.069
SIDE CHAIN
1
-5.42
0.60
121.00
115.58
A
A
A
CB
CG
CD1
TYR
TYR
TYR
110
110
110
N
1
-5.53
0.70
120.80
115.27
A
A
A
CB
CG
CD2
PHE
PHE
PHE
117
117
117
N
1
6.52
0.70
120.80
127.32
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
2
-5.74
0.70
120.80
115.06
A
A
A
CB
CG
CD2
PHE
PHE
PHE
117
117
117
N
2
7.12
0.70
120.80
127.92
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
2
9.26
1.50
110.50
119.76
A
A
A
N
CA
CB
SER
SER
SER
125
125
125
N
3
3.84
0.60
121.00
124.84
A
A
A
CB
CG
CD1
TYR
TYR
TYR
98
98
98
N
3
-4.72
0.60
121.00
116.28
A
A
A
CB
CG
CD1
TYR
TYR
TYR
110
110
110
N
3
-4.95
0.70
120.80
115.85
A
A
A
CB
CG
CD2
PHE
PHE
PHE
117
117
117
N
3
5.87
0.70
120.80
126.67
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
4
-3.88
0.60
121.00
117.12
A
A
A
CB
CG
CD2
TYR
TYR
TYR
92
92
92
N
4
3.72
0.60
121.00
124.72
A
A
A
CB
CG
CD1
TYR
TYR
TYR
92
92
92
N
4
-4.44
0.70
120.80
116.36
A
A
A
CB
CG
CD2
PHE
PHE
PHE
117
117
117
N
4
5.68
0.70
120.80
126.48
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
5
5.38
0.70
120.80
126.18
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
6
-4.06
0.60
121.00
116.94
A
A
A
CB
CG
CD2
TYR
TYR
TYR
80
80
80
N
6
3.77
0.60
121.00
124.77
A
A
A
CB
CG
CD1
TYR
TYR
TYR
80
80
80
N
6
-4.52
0.60
121.00
116.48
A
A
A
CB
CG
CD2
TYR
TYR
TYR
92
92
92
N
6
15.62
2.50
121.70
137.32
A
A
A
C
N
CA
PRO
TYR
TYR
97
98
98
Y
6
-4.68
0.70
120.80
116.12
A
A
A
CB
CG
CD2
PHE
PHE
PHE
117
117
117
N
6
6.16
0.70
120.80
126.96
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
7
9.06
1.50
110.90
119.96
A
A
A
CA
CB
CG1
VAL
VAL
VAL
72
72
72
N
7
-4.18
0.60
121.00
116.82
A
A
A
CB
CG
CD2
TYR
TYR
TYR
80
80
80
N
7
3.89
0.60
121.00
124.89
A
A
A
CB
CG
CD1
TYR
TYR
TYR
80
80
80
N
7
15.40
2.50
121.70
137.10
A
A
A
C
N
CA
PRO
TYR
TYR
97
98
98
Y
8
12.65
1.50
110.90
123.55
A
A
A
CA
CB
CG1
VAL
VAL
VAL
72
72
72
N
8
-5.37
0.70
120.80
115.43
A
A
A
CB
CG
CD2
PHE
PHE
PHE
117
117
117
N
8
6.69
0.70
120.80
127.49
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
9
16.17
2.50
121.70
137.87
A
A
A
C
N
CA
PRO
TYR
TYR
97
98
98
Y
9
5.26
0.70
120.80
126.06
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
10
12.67
1.50
110.90
123.57
A
A
A
CA
CB
CG1
VAL
VAL
VAL
72
72
72
N
10
-3.68
0.60
121.00
117.32
A
A
A
CB
CG
CD1
TYR
TYR
TYR
110
110
110
N
10
-4.49
0.70
120.80
116.31
A
A
A
CB
CG
CD2
PHE
PHE
PHE
117
117
117
N
10
5.13
0.70
120.80
125.93
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
11
4.55
0.60
121.00
125.55
A
A
A
CB
CG
CD2
TYR
TYR
TYR
92
92
92
N
11
-5.87
0.60
121.00
115.13
A
A
A
CB
CG
CD1
TYR
TYR
TYR
92
92
92
N
12
-10.13
1.60
110.90
100.77
A
A
A
CG1
CB
CG2
VAL
VAL
VAL
72
72
72
N
12
11.61
1.50
110.90
122.51
A
A
A
CA
CB
CG2
VAL
VAL
VAL
72
72
72
N
12
-4.28
0.60
121.00
116.72
A
A
A
CB
CG
CD2
TYR
TYR
TYR
92
92
92
N
12
5.66
0.60
121.00
126.66
A
A
A
CB
CG
CD1
TYR
TYR
TYR
92
92
92
N
12
-6.81
0.70
120.80
113.99
A
A
A
CB
CG
CD2
PHE
PHE
PHE
117
117
117
N
12
7.69
0.70
120.80
128.49
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
13
9.75
1.50
110.50
120.25
A
A
A
N
CA
CB
SER
SER
SER
52
52
52
N
13
-7.08
0.60
121.00
113.92
A
A
A
CB
CG
CD2
TYR
TYR
TYR
92
92
92
N
13
6.70
0.60
121.00
127.70
A
A
A
CB
CG
CD1
TYR
TYR
TYR
92
92
92
N
14
9.85
1.50
110.50
120.35
A
A
A
N
CA
CB
SER
SER
SER
76
76
76
N
14
-5.37
0.70
120.80
115.43
A
A
A
CB
CG
CD2
PHE
PHE
PHE
117
117
117
N
14
6.34
0.70
120.80
127.14
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
15
4.76
0.70
120.80
125.56
A
A
A
CB
CG
CD2
PHE
PHE
PHE
45
45
45
N
15
10.02
1.50
110.90
120.92
A
A
A
CA
CB
CG1
VAL
VAL
VAL
72
72
72
N
15
-3.72
0.60
121.00
117.28
A
A
A
CB
CG
CD2
TYR
TYR
TYR
92
92
92
N
15
15.33
2.50
121.70
137.03
A
A
A
C
N
CA
PRO
TYR
TYR
97
98
98
Y
16
-4.20
0.60
121.00
116.80
A
A
A
CB
CG
CD2
TYR
TYR
TYR
92
92
92
N
16
4.75
0.60
121.00
125.75
A
A
A
CB
CG
CD1
TYR
TYR
TYR
92
92
92
N
16
15.53
2.50
121.70
137.23
A
A
A
C
N
CA
PRO
TYR
TYR
97
98
98
Y
17
-5.81
0.60
121.00
115.19
A
A
A
CB
CG
CD1
TYR
TYR
TYR
92
92
92
N
17
4.34
0.70
120.80
125.14
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
18
-4.57
0.60
121.00
116.43
A
A
A
CB
CG
CD2
TYR
TYR
TYR
92
92
92
N
18
5.87
0.60
121.00
126.87
A
A
A
CB
CG
CD1
TYR
TYR
TYR
92
92
92
N
18
17.02
2.70
111.00
128.02
A
A
A
N
CA
C
THR
THR
THR
116
116
116
N
19
-4.66
0.60
121.00
116.34
A
A
A
CB
CG
CD2
TYR
TYR
TYR
92
92
92
N
19
16.84
2.50
121.70
138.54
A
A
A
C
N
CA
PRO
TYR
TYR
97
98
98
Y
19
-3.94
0.60
121.00
117.06
A
A
A
CB
CG
CD2
TYR
TYR
TYR
98
98
98
N
19
3.75
0.60
121.00
124.75
A
A
A
CB
CG
CD1
TYR
TYR
TYR
98
98
98
N
20
11.85
1.50
110.90
122.75
A
A
A
CA
CB
CG2
VAL
VAL
VAL
72
72
72
N
20
-3.77
0.60
121.00
117.23
A
A
A
CB
CG
CD2
TYR
TYR
TYR
110
110
110
N
20
-4.89
0.70
120.80
115.91
A
A
A
CB
CG
CD2
PHE
PHE
PHE
117
117
117
N
20
6.08
0.70
120.80
126.88
A
A
A
CB
CG
CD1
PHE
PHE
PHE
117
117
117
N
1
A
GLU
37
71.50
-73.85
1
A
GLN
51
99.00
139.88
1
A
SER
52
-95.36
45.43
1
A
LYS
58
67.81
-64.42
1
A
GLU
65
-99.30
-60.71
1
A
SER
76
81.05
-59.75
1
A
GLN
77
-147.87
-112.69
1
A
GLU
79
74.55
-47.52
1
A
TYR
81
65.81
-81.96
1
A
LYS
82
48.34
-57.35
1
A
ALA
83
-92.95
-61.60
1
A
GLN
84
146.90
-121.85
1
A
GLN
85
87.17
156.65
1
A
TYR
98
32.12
19.35
1
A
LYS
104
178.02
42.88
1
A
LYS
105
79.46
80.03
1
A
SER
125
94.72
-160.58
1
A
GLN
128
76.59
64.42
1
A
ASP
138
-131.31
-98.63
1
A
ALA
140
-152.65
84.70
1
A
TYR
141
68.93
-77.35
2
A
TYR
36
97.43
-77.02
2
A
LYS
58
-110.40
64.10
2
A
ILE
75
-33.85
58.13
2
A
GLN
77
119.86
-150.33
2
A
GLU
79
70.28
-83.25
2
A
GLN
85
88.68
45.13
2
A
TYR
98
46.46
-5.76
2
A
ILE
102
-47.41
-72.94
2
A
LYS
104
103.00
77.23
2
A
LYS
105
81.23
21.71
2
A
SER
125
102.94
-112.89
2
A
LEU
127
-150.19
-59.04
2
A
GLN
128
-101.22
-126.81
2
A
ASP
138
77.10
-65.05
2
A
ALA
140
-102.41
57.24
3
A
TYR
36
-72.61
30.67
3
A
GLU
37
-162.14
40.12
3
A
ASN
53
101.63
-71.36
3
A
ILE
75
-70.32
32.90
3
A
SER
76
169.45
107.11
3
A
TYR
81
-166.00
-162.64
3
A
GLN
87
80.86
-67.24
3
A
ILE
90
-1.77
81.63
3
A
TYR
98
34.51
2.42
3
A
LYS
104
-165.96
53.28
3
A
LYS
105
76.75
69.02
3
A
SER
125
-24.09
86.96
3
A
ASP
138
-171.18
-161.55
4
A
GLU
37
86.90
-17.06
4
A
GLU
38
84.39
43.44
4
A
GLN
51
68.21
-55.08
4
A
SER
52
106.94
13.32
4
A
GLU
55
81.91
-40.12
4
A
GLU
65
-100.80
-61.65
4
A
GLN
77
-127.23
-116.34
4
A
GLU
79
77.47
74.87
4
A
TYR
81
97.76
174.61
4
A
ALA
83
-74.87
29.73
4
A
LEU
86
-154.97
83.03
4
A
ILE
90
86.88
114.60
4
A
TYR
98
28.32
16.56
4
A
ASP
100
-99.80
31.81
4
A
ILE
102
-9.31
-67.43
4
A
LYS
104
-147.95
-83.90
4
A
SER
125
173.52
-45.32
4
A
LEU
127
70.76
-92.11
4
A
GLU
129
80.55
56.67
4
A
ASP
138
53.20
-85.38
4
A
ALA
140
82.17
-62.72
5
A
GLU
38
68.96
-53.45
5
A
GLU
65
-98.19
-68.29
5
A
ILE
75
-65.38
64.83
5
A
SER
76
-55.93
96.61
5
A
GLU
79
64.87
-42.56
5
A
LYS
82
79.97
30.88
5
A
GLN
84
-96.70
48.37
5
A
TYR
98
31.69
-1.78
5
A
ASP
100
-87.81
48.20
5
A
ILE
102
8.70
-82.95
5
A
LYS
104
-175.27
43.40
5
A
LYS
105
81.55
56.61
5
A
GLN
128
144.55
125.78
6
A
SER
52
107.06
-146.20
6
A
ASN
53
-140.97
51.40
6
A
GLU
55
60.48
-65.06
6
A
ILE
75
56.44
-48.17
6
A
GLU
79
-153.02
65.87
6
A
TYR
80
-96.78
-68.05
6
A
GLN
84
-62.91
69.34
6
A
GLN
85
89.18
29.84
6
A
ILE
90
-146.38
39.40
6
A
TYR
98
10.45
18.08
6
A
ILE
102
-12.51
-70.11
6
A
LYS
104
-169.04
43.57
6
A
LYS
105
84.10
82.81
6
A
ASP
138
-157.36
37.32
6
A
TYR
141
-149.20
-57.86
7
A
GLU
50
-126.82
-89.06
7
A
GLN
51
64.83
-53.83
7
A
SER
52
100.95
-16.15
7
A
ILE
75
74.66
123.84
7
A
GLN
77
-101.49
-60.04
7
A
TYR
81
73.85
-83.86
7
A
GLN
84
64.35
-81.36
7
A
GLN
85
-156.72
-62.25
7
A
ILE
90
132.29
104.83
7
A
TYR
98
-8.48
27.88
7
A
ILE
102
-13.13
-68.34
7
A
LYS
104
-174.14
39.96
7
A
LYS
105
84.46
73.92
7
A
SER
125
80.06
-58.75
7
A
LEU
127
59.11
-67.05
7
A
GLU
129
75.93
64.96
7
A
VAL
142
-99.11
53.48
8
A
TYR
36
72.95
-54.25
8
A
ARG
40
-173.51
-95.88
8
A
SER
52
89.38
-61.11
8
A
GLU
55
-162.57
68.04
8
A
SER
76
-61.18
9.19
8
A
GLU
79
-133.32
-34.95
8
A
TYR
81
75.47
31.12
8
A
ALA
83
-92.47
30.03
8
A
GLN
85
79.34
-47.57
8
A
ILE
90
-36.36
115.69
8
A
TYR
98
18.82
19.07
8
A
ILE
102
-13.70
-71.21
8
A
LYS
104
-173.18
55.89
8
A
LYS
105
82.72
62.64
8
A
SER
125
-169.07
-159.71
8
A
LEU
127
-133.58
-55.99
8
A
GLU
129
-64.77
59.23
8
A
TYR
141
81.13
51.84
9
A
TYR
36
-128.73
-138.21
9
A
ASN
53
105.01
175.42
9
A
ILE
75
43.79
-79.57
9
A
SER
76
-166.14
39.81
9
A
GLN
77
53.89
-61.23
9
A
GLU
79
90.46
135.55
9
A
GLN
84
94.72
108.39
9
A
GLN
87
-86.82
-80.92
9
A
TYR
98
6.01
22.99
9
A
ILE
102
-68.28
-73.13
9
A
LYS
104
-143.58
-71.33
9
A
LYS
105
-162.98
77.75
9
A
SER
125
70.69
-66.21
9
A
GLN
128
-44.85
19.72
10
A
PHE
39
-96.07
45.41
10
A
SER
52
172.64
116.68
10
A
ILE
75
-60.24
91.65
10
A
SER
76
83.71
-55.15
10
A
GLU
79
67.97
-38.64
10
A
TYR
81
-117.22
-76.43
10
A
GLN
84
64.47
-94.51
10
A
GLN
85
-173.09
72.37
10
A
LEU
86
76.38
-52.60
10
A
TYR
98
33.55
137.44
10
A
ASP
99
-58.88
90.22
10
A
ASP
100
-101.55
-124.84
10
A
ILE
102
71.01
-83.92
10
A
LYS
104
94.91
56.71
10
A
LYS
105
80.26
38.78
10
A
GLN
128
74.01
-173.30
10
A
GLU
129
77.37
-108.40
10
A
VAL
142
68.37
-56.33
11
A
GLU
38
54.53
-41.56
11
A
PHE
39
-109.95
42.00
11
A
GLU
50
-100.09
62.23
11
A
SER
52
-156.43
-137.68
11
A
ILE
75
-145.73
-61.99
11
A
SER
76
69.84
-18.10
11
A
GLN
77
-60.38
64.43
11
A
GLU
79
82.42
108.58
11
A
TYR
81
124.53
-37.17
11
A
LEU
86
-119.38
51.28
11
A
GLN
87
69.18
-52.17
11
A
TYR
98
34.99
17.58
11
A
ILE
102
-0.90
-71.89
11
A
LYS
104
178.22
56.03
11
A
LYS
105
73.37
50.79
11
A
THR
116
120.85
-118.77
11
A
PHE
117
90.59
-80.75
11
A
LEU
127
-101.94
-68.42
11
A
GLU
129
94.61
-77.87
11
A
ASP
138
79.89
110.32
11
A
TYR
141
-140.81
47.88
12
A
GLU
37
-134.03
-80.23
12
A
PHE
39
112.50
-174.13
12
A
SER
76
-142.94
-119.03
12
A
TYR
81
-79.17
47.02
12
A
GLN
84
-145.43
30.59
12
A
TYR
98
51.26
-166.99
12
A
ASP
100
-137.91
-67.70
12
A
ILE
102
-6.89
109.83
12
A
LYS
104
-112.35
-106.69
12
A
MET
106
-165.45
-169.09
12
A
SER
125
114.40
-123.24
12
A
LEU
127
80.02
-53.75
12
A
ASP
138
-163.52
-52.25
12
A
ALA
140
-150.80
-78.01
12
A
TYR
141
65.34
-82.05
13
A
GLU
38
80.97
-81.99
13
A
PHE
39
-100.07
-71.52
13
A
SER
52
120.92
-74.50
13
A
ASN
53
65.53
-128.92
13
A
LYS
58
-87.09
-76.97
13
A
GLU
78
-45.73
-18.05
13
A
LYS
82
93.28
104.78
13
A
GLN
84
-168.36
107.04
13
A
LEU
86
-57.52
41.27
13
A
GLN
87
-138.92
-36.19
13
A
ILE
90
-86.93
-104.51
13
A
TYR
98
20.69
17.41
13
A
ILE
102
-58.68
-72.08
13
A
LYS
104
131.59
55.92
13
A
LYS
105
89.95
50.74
13
A
PHE
117
64.41
-67.56
13
A
GLU
129
-107.44
-107.11
14
A
ARG
40
-148.79
42.79
14
A
GLN
51
77.85
68.63
14
A
SER
52
-141.99
55.04
14
A
LYS
58
-117.46
54.16
14
A
ILE
75
73.45
-141.79
14
A
SER
76
167.00
-148.45
14
A
LYS
82
73.92
52.60
14
A
GLN
87
86.18
75.16
14
A
ILE
90
-41.97
154.15
14
A
TYR
98
20.29
26.88
14
A
LYS
104
-169.61
57.62
14
A
LYS
105
72.50
65.25
14
A
ILE
118
-81.23
-71.53
14
A
ASP
120
-162.57
79.03
14
A
GLN
128
85.40
-13.54
14
A
GLU
129
-83.78
-130.45
14
A
ALA
140
73.67
-19.16
15
A
TYR
36
-93.64
56.49
15
A
GLU
38
-73.74
43.48
15
A
PHE
39
91.58
-91.98
15
A
GLU
50
-88.50
-103.69
15
A
GLN
51
97.49
152.20
15
A
SER
52
-90.83
57.16
15
A
GLU
65
-91.65
-63.13
15
A
ILE
75
-84.18
32.95
15
A
GLN
77
-79.23
-121.66
15
A
TYR
81
79.13
-176.83
15
A
LYS
82
-94.74
-74.58
15
A
ALA
83
-72.57
30.05
15
A
TYR
98
19.64
20.42
15
A
ASP
100
-110.24
64.33
15
A
LYS
105
79.32
53.87
15
A
SER
125
176.91
-171.01
15
A
GLN
128
74.67
56.07
15
A
GLU
129
-104.82
-112.27
15
A
VAL
142
61.01
-56.24
16
A
GLU
37
-119.42
-95.31
16
A
ARG
40
-150.87
43.38
16
A
GLU
50
-144.21
-53.54
16
A
LYS
58
-100.42
55.55
16
A
GLU
79
69.66
-62.46
16
A
TYR
80
-96.88
-63.79
16
A
TYR
81
-158.24
-55.88
16
A
ALA
83
-59.67
30.81
16
A
GLN
84
93.08
141.75
16
A
TYR
98
10.24
19.81
16
A
ILE
102
7.35
-77.84
16
A
LYS
104
-142.08
-70.64
16
A
LYS
105
-173.55
53.87
16
A
MET
106
-157.70
-148.14
16
A
SER
125
-30.89
20.20
16
A
ASP
138
-146.41
-135.98
17
A
TYR
36
-143.74
-81.22
17
A
SER
52
-163.57
-169.99
17
A
GLU
55
62.38
-83.66
17
A
LYS
58
74.48
62.12
17
A
ILE
75
64.67
-165.12
17
A
GLU
79
67.32
-59.29
17
A
GLN
84
82.82
42.45
17
A
GLN
85
-75.03
37.90
17
A
LEU
86
78.54
-161.07
17
A
ILE
90
72.52
81.67
17
A
TYR
98
2.43
22.11
17
A
LYS
104
168.63
60.83
17
A
LYS
105
76.06
48.45
17
A
SER
125
91.88
-94.69
17
A
GLN
128
93.30
126.52
17
A
GLU
129
-69.50
52.52
17
A
ASP
138
-101.38
56.06
17
A
ALA
140
71.96
-64.53
17
A
TYR
141
-103.24
71.46
18
A
TYR
36
79.17
43.07
18
A
GLU
37
-82.40
47.25
18
A
GLU
38
-134.45
-112.03
18
A
SER
52
75.33
46.27
18
A
LYS
58
30.26
-28.02
18
A
ILE
75
-51.56
102.09
18
A
SER
76
-105.98
-101.19
18
A
GLN
77
-170.97
-178.98
18
A
GLU
79
80.81
-57.84
18
A
ALA
83
-101.76
-62.33
18
A
GLN
84
72.60
-139.94
18
A
GLN
85
82.11
155.11
18
A
TYR
98
34.76
13.88
18
A
ILE
102
15.25
-87.58
18
A
LYS
104
-142.09
-73.52
18
A
THR
116
71.49
-89.75
18
A
PHE
117
103.56
-74.34
18
A
SER
125
68.59
-61.37
18
A
LEU
127
-158.92
47.64
18
A
GLN
128
73.44
33.31
18
A
GLU
129
72.83
46.77
18
A
ASP
138
83.85
79.28
18
A
TYR
141
-82.05
34.54
18
A
VAL
142
-101.31
60.40
19
A
TYR
36
-64.48
51.11
19
A
GLU
37
73.93
86.46
19
A
GLU
38
-118.03
65.34
19
A
GLU
50
91.75
76.79
19
A
GLU
55
87.67
-105.12
19
A
SER
76
-173.89
-152.13
19
A
GLN
77
-132.25
-136.03
19
A
TYR
81
87.42
-115.93
19
A
LYS
82
-125.58
-97.44
19
A
GLN
84
86.19
-71.92
19
A
ILE
90
-151.14
74.13
19
A
TYR
98
19.04
-10.62
19
A
GLU
129
72.53
39.21
19
A
ASP
138
-102.83
66.19
19
A
TYR
141
-146.93
-44.67
20
A
GLN
51
-81.46
40.93
20
A
SER
52
-109.22
-62.02
20
A
ILE
75
60.45
130.17
20
A
GLU
79
-104.54
77.88
20
A
ILE
90
-175.99
123.42
20
A
TYR
98
21.58
17.04
20
A
LYS
104
-169.74
40.59
20
A
LYS
105
71.42
75.31
20
A
SER
125
50.11
-122.56
20
A
LEU
127
-131.73
-81.18
20
A
GLU
129
75.12
59.04
20
A
TYR
141
-176.13
-179.44
20
A
VAL
142
52.43
-41.46
lowest energy, model 1
GP16
1
N
N
VIRAL PROTEIN
beta-barrel, viral protein
O48446_BPSPP
UNP
1
1
O48446
MYEEFPDVITFQSYVEQSNGEGGKTYKWVDEFTAAAHVQPISQEEYYKAQQLQTPIGYNIYTPYDDRIDKKMRVIYRGKI
VTFIGDPVDLSGLQEITRIKGKEDGAYVG
1
109
2KCA
35
143
O48446
A
1
1
109
1
PRO
engineered mutation
ARG
40
2KCA
A
O48446
UNP
6
6
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ASP
41
A
ASP
7
A
VAL
49
A
VAL
15
A
LYS
61
A
LYS
27
A
PRO
74
A
PRO
40
A
GLY
91
A
GLY
57
A
PRO
97
A
PRO
63
A
ILE
130
A
ILE
96
A
LYS
136
A
LYS
102
A
LYS
113
A
LYS
79
A
ASP
123
A
ASP
89
A
MET
106
A
MET
72
A
TYR
110
A
TYR
76
A
ASP
41
A
ASP
7
A
VAL
49
A
VAL
15