1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Rogne, P.
Haugen, M.
Fimland, G.
Nissen-Meyer, J.
Kristiansen, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Peptides
0196-9781
30
1613
1621
10.1016/j.peptides.2009.06.010
19538999
Three-dimensional structure of the two-peptide bacteriocin plantaricin JK.
2009
10.2210/pdb2keg/pdb
pdb_00002keg
3509.958
PlnK
bacteriocin peptide K
1
syn
polymer
Bacteriocin PlnK
no
no
RRSRKNGIGYAIGYAFGAVERAVLGGSRDYNK
RRSRKNGIGYAIGYAFGAVERAVLGGSRDYNK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Part of two-peptide bacteriocin Plantaricin JK
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
1
0
2009-07-07
1
1
2011-07-13
1
2
2022-03-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
BMRB
Y
RCSB
2009-01-30
REL
REL
1590
Lactobacillus plantarum
sample
408
99
0
153
156
structures with the lowest energy
100
20
0.12
2D 1H-1H TOCSY
2D 1H-1H COSY
2D 1H-1H NOESY
2D DQF-COSY
2D 1H-15N HSQC
2D 1H-13C HSQC
1
mM
170
mM
[U-99% 2H]
0.1
%
10
%
0.2
mM
0
2.5
ambient
312
K
torsion angle dynamics
1
lowest energy
1 mM PlnK-1, 170 mM [U-99% 2H] DPC-2, 0.1 % TFA-3, 10 % D2O-4, 0.2 mM DSS-5, 90% H2O/10% D2O
90% H2O/10% D2O
Bruker Biospin
collection
TopSpin
1.3
Bruker Biospin
processing
TopSpin
1.3
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Goddard
data analysis
Sparky
Goddard
peak picking
Sparky
Goddard
chemical shift assignment
Sparky
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
2.1
Guntert, Mumenthaler and Wuthrich
refinement
CYANA
2.1
Koradi, Billeter and Wuthrich
data analysis
MOLMOL
2k2
Delaglio, Zhengrong and Bax
data analysis
ACME
2001.006.11.26
600
Bruker
AVANCE
Bruker Avance
ARG
1
n
1
ARG
1
A
ARG
2
n
2
ARG
2
A
SER
3
n
3
SER
3
A
ARG
4
n
4
ARG
4
A
LYS
5
n
5
LYS
5
A
ASN
6
n
6
ASN
6
A
GLY
7
n
7
GLY
7
A
ILE
8
n
8
ILE
8
A
GLY
9
n
9
GLY
9
A
TYR
10
n
10
TYR
10
A
ALA
11
n
11
ALA
11
A
ILE
12
n
12
ILE
12
A
GLY
13
n
13
GLY
13
A
TYR
14
n
14
TYR
14
A
ALA
15
n
15
ALA
15
A
PHE
16
n
16
PHE
16
A
GLY
17
n
17
GLY
17
A
ALA
18
n
18
ALA
18
A
VAL
19
n
19
VAL
19
A
GLU
20
n
20
GLU
20
A
ARG
21
n
21
ARG
21
A
ALA
22
n
22
ALA
22
A
VAL
23
n
23
VAL
23
A
LEU
24
n
24
LEU
24
A
GLY
25
n
25
GLY
25
A
GLY
26
n
26
GLY
26
A
SER
27
n
27
SER
27
A
ARG
28
n
28
ARG
28
A
ASP
29
n
29
ASP
29
A
TYR
30
n
30
TYR
30
A
ASN
31
n
31
ASN
31
A
LYS
32
n
32
LYS
32
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ARG
2
-147.65
23.53
1
A
SER
27
-162.49
-152.19
1
A
ARG
28
63.25
61.91
1
A
TYR
30
-145.97
-149.07
1
A
ASN
31
79.87
44.25
2
A
ARG
2
66.53
74.34
2
A
SER
27
177.69
138.64
2
A
ARG
28
-167.41
38.44
2
A
ASN
31
156.40
-25.60
3
A
LYS
5
-95.95
-66.47
3
A
SER
27
177.80
135.02
3
A
ARG
28
-152.09
71.99
4
A
ARG
2
-166.52
62.19
4
A
SER
3
159.73
-26.80
4
A
ASN
6
162.07
90.21
4
A
ILE
8
-177.08
-38.96
4
A
SER
27
-128.02
-157.49
4
A
ARG
28
61.35
169.51
4
A
ASP
29
-106.54
-64.13
5
A
ASN
6
60.01
114.44
5
A
ILE
8
87.67
-12.09
5
A
ARG
28
160.50
78.84
5
A
ASP
29
-118.68
-71.21
5
A
ASN
31
-178.48
41.16
6
A
ASN
6
164.56
127.19
6
A
ILE
8
87.78
-12.19
6
A
SER
27
-179.38
145.75
6
A
ASP
29
71.17
101.69
7
A
LYS
5
-92.00
-64.83
7
A
ASN
6
60.83
114.27
7
A
SER
27
-176.29
144.64
7
A
ARG
28
-152.89
57.68
7
A
TYR
30
-115.80
56.95
8
A
ARG
2
-141.34
40.80
8
A
ASP
29
-153.55
44.80
9
A
ARG
2
56.92
83.53
9
A
SER
3
159.79
-26.85
9
A
ASN
6
-161.90
116.99
9
A
ILE
8
87.72
-12.47
9
A
SER
27
167.47
138.93
9
A
ARG
28
-141.44
48.56
9
A
TYR
30
-148.16
-86.31
10
A
ARG
2
-152.41
48.32
10
A
SER
27
-171.29
140.35
10
A
ARG
28
-173.64
39.87
10
A
ASP
29
-143.56
-49.01
10
A
TYR
30
176.27
125.68
11
A
ARG
28
57.95
110.41
11
A
ASP
29
-120.65
-51.74
12
A
ARG
2
46.29
28.43
12
A
ASN
6
-103.45
-88.58
12
A
ILE
8
87.81
-12.08
12
A
SER
27
-145.77
-157.14
12
A
ARG
28
56.22
-177.25
12
A
ASP
29
-141.44
-53.23
12
A
ASN
31
160.79
57.90
13
A
ARG
2
64.96
89.71
13
A
ASN
6
-61.51
-88.64
13
A
ILE
8
87.71
-12.14
13
A
SER
27
-168.27
-152.21
13
A
ASP
29
-138.77
-62.13
14
A
ARG
2
-175.74
43.05
14
A
ASN
6
-86.94
-88.58
14
A
SER
27
-162.70
-160.62
14
A
ARG
28
58.58
-179.39
14
A
ASP
29
-121.38
-72.53
15
A
ARG
2
-174.92
95.17
15
A
SER
3
159.76
-26.82
15
A
ASN
6
-69.58
-88.56
15
A
ILE
8
87.65
-12.18
15
A
ARG
28
74.26
-177.69
16
A
ARG
2
70.46
85.36
16
A
SER
3
59.98
16.13
16
A
ASN
6
76.50
107.45
16
A
SER
27
172.67
133.05
16
A
ARG
28
-175.83
-175.93
16
A
ASP
29
54.32
71.82
16
A
ASN
31
-47.00
-88.33
17
A
ASN
6
58.54
100.39
17
A
ILE
8
164.11
-30.00
17
A
ASP
29
-165.45
-46.06
17
A
ASN
31
-107.24
68.99
18
A
ASN
6
-116.57
-88.63
18
A
ILE
8
-176.98
-39.11
18
A
SER
27
-141.48
-153.98
18
A
ARG
28
61.10
96.11
18
A
ASP
29
-119.16
-77.92
18
A
ASN
31
156.32
-25.58
19
A
ASN
6
177.44
138.58
19
A
ILE
8
87.80
-12.02
20
A
ARG
2
-96.94
-93.63
20
A
SER
3
159.84
-26.75
20
A
ASN
6
167.77
93.86
20
A
ASP
29
-141.65
53.43
NMR structure of Plantaricin K in DPC-micelles
1
N
N
A
ILE
8
A
ILE
8
HELX_P
A
LEU
24
A
LEU
24
1
1
17
ANTIMICROBIAL PROTEIN
Protein, ANTIMICROBIAL PROTEIN
P71460_LACPL
UNP
1
26
P71460
RRSRKNGIGYAIGYAFGAVERAVLGGSRDYNK
26
57
2KEG
1
32
P71460
A
1
1
32