1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lim, K.W.
Amrane, S.
Bouaziz, S.
Xu, W.
Mu, Y.
Patel, D.J.
Luu, K.N.
Phan, A.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H13 Br N5 O7 P
426.117
n
8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
131
4301
4309
10.1021/ja807503g
19271707
Structure of the human telomere in K+ solution: a stable basket-type G-quadruplex with only two G-tetrad layers
2009
7053.379
HUMAN TELOMERE DNA
1
syn
polymer
no
yes
(DG)(DG)(DG)(DT)(DT)(DA)(BGM)(DG)(DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DT)(DA)(DG)
(DG)(DG)(DT)
GGGTTAGGGTTAGGGTTAGGGT
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-17.842
8
A
3
A
18
24.820
A_DG3:DA18_A
1
16.459
0.136
-0.321
1.532
-5.717
6
A
15
A
19
-90.162
A_DG15:DG19_A
2
10.385
1.444
0.262
-3.484
3.585
6
A
7
A
2
87.823
A_BGM7:DG2_A
3
6.394
-2.057
-0.473
-3.131
6.858
6
A
8
A
1
-89.966
A_DG8:DG1_A
4
-19.173
1.580
0.176
3.432
6.027
6
A
20
A
14
90.013
A_DG20:DG14_A
5
-7.705
-1.657
0.485
-3.330
-10.950
6
A
21
A
9
-91.213
A_DG21:DG9_A
6
6.535
2.171
-0.642
2.711
-18.820
A
22
A
11
-160.421
A_DT22:DT11_A
7
-10.741
-1.714
-0.650
-2.748
3.169
-156.014
A
A
3
15
-1.227
A
A
18
19
3.146
2.401
3.093
1.245
AA_DG3DG15:DG19DA18_AA
1
-5.009
-2.560
-155.985
-0.644
1.566
0.064
179.968
A
A
7
8
79.628
A
A
2
1
0.079
159.255
3.502
0.051
AA_BGM7DG8:DG1DG2_AA
2
-77.134
38.567
178.807
0.025
-1.751
0.412
-178.822
A
A
8
20
3.477
A
A
1
14
0.410
-6.953
1.457
3.486
AA_DG8DG20:DG14DG1_AA
3
4.408
2.204
-178.819
-1.743
0.729
3.552
121.938
A
A
20
21
3.149
A
A
14
9
3.651
5.506
-1.735
-3.227
AA_DG20DG21:DG9DG14_AA
4
1.263
-0.722
121.861
-1.901
1.005
2.912
66.592
A
A
21
22
0.770
A
A
9
11
2.831
0.845
1.087
1.528
AA_DG21DT22:DT11DG9_AA
5
4.780
-4.357
66.435
1.363
-0.824
repository
Initial release
Version format compliance
1
0
2009-03-24
1
1
2011-07-13
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF NA
HUMAN TELOMERE DNA CRYSTAL STRUCTURE IN THE PRESENCE OF K
END-MODIFIED HUMAN TELOMERE DNA CRYSTAL STRUCTURE IN THE PRESENCE OF K
3 REPEATS OF HUMAN TELOMERE DNA SOLUTION STRUCTURE
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS 16BRG FORM 1
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS NATURAL FORM 2
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS NATURAL FORM 1
HUMAN TELOMERE DNA SOLUTION STRUCTURE IN THE PRESENCE OF K CATIONS FORM 2 15BRG
STRUCTURE OF A TWO-G-TETRAD BASKET-TYPE INTRAMOLECULAR G-QUADRUPLEX FORMED BY HUMAN TELOMERIC REPEATS IN K+ SOLUTION
BMRB
Y
PDBJ
2009-02-12
REL
REL
Nucleotide synthesis
sample
0
0
8
0
4
0
8
0
580
272
40
49
219
42
back calculated data agree with experimental NOESY spectrum
100
10
0.193
0.239
1
0.018
0.002
2D 1H-13C HSQC
2D 1H-1H TOCSY
2D 1H-1H COSY
2D 1H-1H NOESY
2D 1H-1H NOESY
2D 1H-1H NOESY
2D 1H-15N HSQC
0.5
mM
70
mM
20
mM
0.5
mM
70
mM
20
mM
7
298
K
5
283
K
matrix relaxation, molecular dynamics, DGSA-distance geometry simulated annealing
1
lowest energy
0.5-2.5mM DNA (5'-D(*DGP*DGP*DGP*DTP*DTP*DAP*(BGM)P*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3')-1, 70mM potassium chloride-2, 20mM potassium phosphate-3, 90% H2O/10% D2O
90% H2O/10% D2O
0.5-2.5mM DNA (5'-D(*DGP*DGP*DGP*DTP*DTP*DAP*(BGM)P*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DTP*DTP*DAP*DGP*DGP*DGP*DT)-3')-4, 70mM potassium chloride-5, 20mM potassium phosphate-6, 100% D2O
100% D2O
Felix NMR, Inc.
peak picking
Felix
2007
Bruker Biospin
processing
TOPSPIN
Schwieters, Kuszewski, Tjandra, Clore
structure solution
X-PLOR_NIH
2.21
Schwieters, Kuszewski, Tjandra, Clore
refinement
X-PLOR_NIH
2.21
600
Bruker
Avance
Bruker Avance
700
Bruker
Avance
Bruker Avance
600
Varian
INOVA
Varian INOVA
DG
1
n
1
DG
1
A
DG
2
n
2
DG
2
A
DG
3
n
3
DG
3
A
DT
4
n
4
DT
4
A
DT
5
n
5
DT
5
A
DA
6
n
6
DA
6
A
BGM
7
n
7
BGM
7
A
DG
8
n
8
DG
8
A
DG
9
n
9
DG
9
A
DT
10
n
10
DT
10
A
DT
11
n
11
DT
11
A
DA
12
n
12
DA
12
A
DG
13
n
13
DG
13
A
DG
14
n
14
DG
14
A
DG
15
n
15
DG
15
A
DT
16
n
16
DT
16
A
DT
17
n
17
DT
17
A
DA
18
n
18
DA
18
A
DG
19
n
19
DG
19
A
DG
20
n
20
DG
20
A
DG
21
n
21
DG
21
A
DT
22
n
22
DT
22
A
author_defined_assembly
1
monomeric
A
BGM
7
A
BGM
7
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-3.64
0.60
122.90
119.26
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
2
-3.70
0.60
122.90
119.20
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
8
-3.76
0.60
122.90
119.14
A
A
A
C6
C5
C7
DT
DT
DT
4
4
4
N
9
-3.64
0.60
122.90
119.26
A
A
A
C6
C5
C7
DT
DT
DT
16
16
16
N
2
A
A
C5'
C4'
DA
DA
12
12
0.044
0.007
1.512
1.556
N
HUMAN TELOMERE DNA
lowest energy, model 1
Structure of a two-G-tetrad basket-type intramolecular G-quadruplex formed by human telomeric repeats in K+ solution (with G7-to-BRG substitution)
1
N
N
covale
1.616
A
DA
6
A
O3'
DA
6
1_555
A
BGM
7
A
P
BGM
7
1_555
covale
1.624
A
BGM
7
A
O3'
BGM
7
1_555
A
DG
8
A
P
DG
8
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
N7
DG
1
1_555
A
DG
8
A
N2
DG
8
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
O6
DG
1
1_555
A
DG
8
A
N1
DG
8
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
N1
DG
1
1_555
A
DG
14
A
O6
DG
14
1_555
hydrog
TYPE_6_PAIR
A
DG
1
A
N2
DG
1
1_555
A
DG
14
A
N7
DG
14
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N1
DG
2
1_555
A
BGM
7
A
O6
BGM
7
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N2
DG
2
1_555
A
BGM
7
A
N7
BGM
7
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
N7
DG
2
1_555
A
DG
15
A
N2
DG
15
1_555
hydrog
TYPE_6_PAIR
A
DG
2
A
O6
DG
2
1_555
A
DG
15
A
N1
DG
15
1_555
hydrog
TYPE_11_PAIR
A
DG
3
A
N2
DG
3
1_555
A
DA
6
A
N7
DA
6
1_555
hydrog
TYPE_11_PAIR
A
DG
3
A
N3
DG
3
1_555
A
DA
6
A
N6
DA
6
1_555
hydrog
TYPE_8_PAIR
A
DG
3
A
N1
DG
3
1_555
A
DA
18
A
N1
DA
18
1_555
hydrog
TYPE_8_PAIR
A
DG
3
A
O6
DG
3
1_555
A
DA
18
A
N6
DA
18
1_555
hydrog
DT-DA PAIR
A
DT
5
A
N3
DT
5
1_555
A
DA
18
A
N1
DA
18
1_555
hydrog
TYPE_6_PAIR
A
BGM
7
A
N1
BGM
7
1_555
A
DG
19
A
O6
DG
19
1_555
hydrog
TYPE_6_PAIR
A
BGM
7
A
N2
BGM
7
1_555
A
DG
19
A
N7
DG
19
1_555
hydrog
TYPE_6_PAIR
A
DG
8
A
N7
DG
8
1_555
A
DG
20
A
N2
DG
20
1_555
hydrog
TYPE_6_PAIR
A
DG
8
A
O6
DG
8
1_555
A
DG
20
A
N1
DG
20
1_555
hydrog
DG-DG MISPAIR
A
DG
9
A
N1
DG
9
1_555
A
DG
13
A
O6
DG
13
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N7
DG
9
1_555
A
DG
21
A
N2
DG
21
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
O6
DG
9
1_555
A
DG
21
A
N1
DG
21
1_555
hydrog
DT-DT MISPAIR
A
DT
11
A
N3
DT
11
1_555
A
DT
22
A
O2
DT
22
1_555
hydrog
TYPE_6_PAIR
A
DG
14
A
N1
DG
14
1_555
A
DG
20
A
O6
DG
20
1_555
hydrog
TYPE_6_PAIR
A
DG
14
A
N2
DG
14
1_555
A
DG
20
A
N7
DG
20
1_555
hydrog
TYPE_6_PAIR
A
DG
15
A
N7
DG
15
1_555
A
DG
19
A
N2
DG
19
1_555
hydrog
TYPE_6_PAIR
A
DG
15
A
O6
DG
15
1_555
A
DG
19
A
N1
DG
19
1_555
DNA
anticancer targets, human telomere, intramolecular G-quadruplexes, DNA
2KF7
PDB
1
1
2KF7
GGGTTAGGGTTAGGGTTAGGGT
1
22
2KF7
1
22
2KF7
A
1
1
22