1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Aramini, J.M. Belote, R.L. Ciccosanti, C.T. Jiang, M. Rost, B. Nair, R. Swapna, G.V.T. Acton, T.B. Xiao, R. Everett, J.K. Montelione, G.T. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 S C N 149 N C N 150 N C N 151 N C N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C N 171 N C N 172 N C N 173 N C N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N C N 195 N C N 196 N N N 197 N O N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C N 218 N C N 219 N S N 220 N C N 221 N O N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N N N 234 S C N 235 N C N 236 N O N 237 N C Y 238 N C Y 239 N C Y 240 N C Y 241 N C Y 242 N C Y 243 N C N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C N 261 N C N 262 N C N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N O N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 R C N 292 N O N 293 N C N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C Y 309 N C Y 310 N C Y 311 N C Y 312 N N Y 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C Y 341 N C N 342 N O N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 N C N 360 N C N 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing Y 233 N doub Y 234 N sing Y 235 N sing N 236 N sing Y 237 N doub N 238 N sing Y 239 N doub N 240 N sing Y 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing Y 302 N doub Y 303 N sing Y 304 N sing N 305 N sing Y 306 N doub Y 307 N sing Y 308 N sing N 309 N sing Y 310 N sing Y 311 N doub N 312 N sing Y 313 N doub N 314 N sing Y 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N doub N 335 N sing Y 336 N doub N 337 N sing Y 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing To be Published 0353 Solution NMR structure of an O6-methylguanine DNA methyltransferase family protein from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium target VpR247. 10.2210/pdb2kim/pdb pdb_00002kim 12341.314 O6-methylguanine-DNA methyltransferase 1 man polymer Methylated-DNA-protein-cysteine methyltransferase-related protein no no MDQFLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGKISLKGRDLDRQKQKLEA EGIEVSEIGKIALRKYKWQPLEHHHHHH MDQFLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGKISLKGRDLDRQKQKLEA EGIEVSEIGKIALRKYKWQPLEHHHHHH A VpR247 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample A79_1377, VP0951 419109 Vibrio parahaemolyticus AQ3810 469008 Escherichia coli BL21(DE3) BL21(DE3)MGK plasmid VpR247-21.9 Structure solved using data obtained exclusively from a 1.7-mm microcyoprobe Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative audit_author pdbx_struct_assembly pdbx_struct_oper_list chem_comp_atom chem_comp_bond database_2 pdbx_nmr_software pdbx_nmr_spectrometer repository Initial release Version format compliance Derived calculations Structure summary Data collection Database references 1 0 2009-07-07 1 1 2011-07-13 1 2 2018-01-31 1 3 2024-05-01 _audit_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model Y BMRB Y RCSB 2009-05-07 REL REL 1835 541 540 315 439 56 3 5 54 55 THE PROTEIN IS MONOMERIC BY GEL FILTRATION CHROMATOGRAPHY, STATIC LIGHT SCATTERING AND 15N T1/T2 RELAXATION. THE STRUCTURE WAS DETERMINED USING TRIPLE RESONANCE NMR SPECTROSCOPY. SPECTRA FOR BACKBONE AND SIDE CHAIN ASSIGNMENTS AND NOESY SPECTRA USED FOR STRUCTURE CALCULATION WERE OBTAINED ON A 1.7-MM MICROCRYOPROBE AT 600 MHZ. BACKBONE ASSIGNMENTS WERE MADE USING AUTOASSIGN AND PINE, AND THE SIDE CHAIN ASSIGNMENTS WERE COMPLETED MANUALLY. AUTOMATIC NOESY ASSIGNMENTS WERE DETERMINED USING CYANA 3.0. BACKBONE (PHI/PSI) DIHEDRAL ANGLE CONSTRAINTS WERE OBTAINED FROM TALOS. HYDROGEN BOND CONSTRAINTS WERE DETERMINED USING BOTH AUTOSTRUCTURE AND CYANA, AND WERE APPLIED ONLY IN THE FINAL REFINEMENT STAGE (CNS) OF THE STRUCTURE DETERMINATION. ROTAMER STATES OF SPECIFIC ORDERED RESIDUES WERE CONSTRAINED IN THE FINAL STAGE OF THE STRUCTURE REFINEMENT BASED ON PROCHECK AND MOLPROBITY. COMPLETENESS OF NMR ASSIGNMENTS (EXCLUDING C-TERMINAL HHHHHH): BACKBONE, 97.6%, SIDE CHAIN, 98.3%, AROMATICS, 100%, STEREOSPECIFIC METHYL, 100%, STEREOSPECIFIC SIDE CHAIN NH2: 100%. FINAL STRUCTURE QUALITY FACTORS (FOR RESIDUES 1 TO 102, PSVS 1.3), WHERE ORDERED RESIDUES [S(PHI) + S(PSI) > 1.8] COMPRISE: 3-32,35-47,51-67,69-100: (A) RMSD (ORDERED RESIDUES): BB, 0.6, HEAVY ATOM, 1.0. (B) RAMACHANDRAN STATISTICS FOR ORDERED RESIDUES: MOST FAVORED, 90.6%, ADDITIONALLY ALLOWED, 9.2%, GENEROUSLY ALLOWED, 0.0%, DISALLOWED, 0.1%. (C) PROCHECK SCORES FOR ORDERED RESIDUES (RAW/Z-): PHI-PSI, -0.13/-0.20, ALL, -0.04/-0.24. (D) MOLPROBITY CLASH SCORE (RAW/Z-): 20.04/-1.91 (E) RPF SCORES FOR GOODNESS OF FIT TO NOESY DATA (RESIDUES 1-102): RECALL, 0.982, PRECISION, 0.910, F-MEASURE, 0.945, DP-SCORE, 0.788. (F) NUMBER OF CLOSE CONTACTS PER 20 MODELS: 16. (G) MOLPROBITY RAMACHANDRAN ANALYSIS (ALL RESIDUES): THE C-TERMINAL HIS TAG RESIDUES OF THE PROTEIN (HHHHHH) WERE NOT INCLUDED IN THE STRUCTURE CALCULATIONS AND HAVE BEEN OMITTED FROM THIS DEPOSITION. COORDINATES FOR THE FOLLOWING RESIDUES ARE NOT WELL DETERMINED [S(PHI) + S(PSI) < 1.8]: 1-2,33-34,48-50,68,101-102. structures with the lowest energy 100 20 4.9 0.29 0.01 2D 1H-15N HSQC 2D 1H-13C HSQC 3D 1H-13C NOESY aliphatic 3D 1H-13C NOESY aromatic 3D HNCO 3D HN(CA)CO 3D HNCA 3D CBCA(CO)NH 3D HNCACB 3D HBHA(CO)NH 3D HCCH-COSY aliphatic 3D HCCH-TOCSY aliphatic 3D (H)CCH-TOCSY aliphatic 3D HNHA 3D HN(CO)CA 2D 1H-15N hetNOE 1D 1H-15N T1 and T2 2D 1H-13C HSQC high res. (L/V methyl stereoassignment) 3D 1H-15N NOESY 0.94 mM [U-100% 13C; U-100% 15N] 20 mM 200 mM 5 mM 10 mM 0.02 % 50 uM 0.92 mM [U-5% 13C; U-100% 15N] 20 mM 200 mM 5 mM 10 mM 0.02 % 50 uM 0.2 6.5 ambient 298 K THE FINAL STRUCTURES ARE BASED ON A TOTAL OF 1835 CONFORMATIONALLY-RESTRICTING NOE-DERIVED DISTANCE CONSTRAINTS, 117 DIHEDRAL ANGLE CONSTRAINTS, AND 56 HYDROGEN BOND CONSTRAINTS (19.9 CONSTRAINTS PER RESIDUE, 5.4 LONG RANGE CONSTRAINTS PER RESIDUE, COMPUTED FOR RESIDUES 1 TO 102 BY PSVS 1.3). STRUCTURE DETERMINATION WAS PERFORMED ITERATIVELY USING CYANA 3.0. THE 20 STRUCTURES OUT OF 100 WITH THE LOWEST TARGET FUNCTION WERE FURTHER REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS) WITH PARAM19, AND USING NEUTRAL HISTIDINES (NE2H TAUTOMER) AT POSITIONS 13 and 38. simulated annealing 1 lowest energy 0.94 mM [U-100% 13C; U-100% 15N] VpR247, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 50 uM DSS, 90% H2O/10% D2O 90% H2O/10% D2O 0.92 mM [U-5% 13C; U-100% 15N] VpR247, 20 mM MES, 200 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide, 50 uM DSS, 90% H2O/10% D2O 90% H2O/10% D2O Bruker Biospin collection TopSpin 2.1 Bruker Biospin data analysis TopSpin 2.1 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe 2.3 Goddard data analysis Sparky 3.112 Goddard peak picking Sparky 3.112 Bahrami, Markley, Assadi, and Eghbalnia chemical shift assignment PINE 1.0 Zimmerman, Moseley, Kulikowski and Montelione chemical shift assignment AutoAssign 2.4.0 Zimmerman, Moseley, Kulikowski and Montelione validation AutoAssign 2.4.0 Guntert, Mumenthaler and Wuthrich structure solution CYANA 3.0 Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS 1.2 Huang, Tejero, Powers and Montelione rpf analysis AutoStructure 2.2.1 Bhattacharya and Montelione structure quality analysis PSVS 1.3 Richardson structure quality analysis MolProbity 3.15 Tejero and Montelione pdb coordinate analysis PdbStat 5.1 600 Bruker AVANCE Bruker Avance MET 1 n 1 MET 1 A ASP 2 n 2 ASP 2 A GLN 3 n 3 GLN 3 A PHE 4 n 4 PHE 4 A LEU 5 n 5 LEU 5 A VAL 6 n 6 VAL 6 A GLN 7 n 7 GLN 7 A ILE 8 n 8 ILE 8 A PHE 9 n 9 PHE 9 A ALA 10 n 10 ALA 10 A VAL 11 n 11 VAL 11 A ILE 12 n 12 ILE 12 A HIS 13 n 13 HIS 13 A GLN 14 n 14 GLN 14 A ILE 15 n 15 ILE 15 A PRO 16 n 16 PRO 16 A LYS 17 n 17 LYS 17 A GLY 18 n 18 GLY 18 A LYS 19 n 19 LYS 19 A VAL 20 n 20 VAL 20 A SER 21 n 21 SER 21 A THR 22 n 22 THR 22 A TYR 23 n 23 TYR 23 A GLY 24 n 24 GLY 24 A GLU 25 n 25 GLU 25 A ILE 26 n 26 ILE 26 A ALA 27 n 27 ALA 27 A LYS 28 n 28 LYS 28 A MET 29 n 29 MET 29 A ALA 30 n 30 ALA 30 A GLY 31 n 31 GLY 31 A TYR 32 n 32 TYR 32 A PRO 33 n 33 PRO 33 A GLY 34 n 34 GLY 34 A TYR 35 n 35 TYR 35 A ALA 36 n 36 ALA 36 A ARG 37 n 37 ARG 37 A HIS 38 n 38 HIS 38 A VAL 39 n 39 VAL 39 A GLY 40 n 40 GLY 40 A LYS 41 n 41 LYS 41 A ALA 42 n 42 ALA 42 A LEU 43 n 43 LEU 43 A GLY 44 n 44 GLY 44 A ASN 45 n 45 ASN 45 A LEU 46 n 46 LEU 46 A PRO 47 n 47 PRO 47 A GLU 48 n 48 GLU 48 A GLY 49 n 49 GLY 49 A SER 50 n 50 SER 50 A LYS 51 n 51 LYS 51 A LEU 52 n 52 LEU 52 A PRO 53 n 53 PRO 53 A TRP 54 n 54 TRP 54 A PHE 55 n 55 PHE 55 A ARG 56 n 56 ARG 56 A VAL 57 n 57 VAL 57 A ILE 58 n 58 ILE 58 A ASN 59 n 59 ASN 59 A SER 60 n 60 SER 60 A GLN 61 n 61 GLN 61 A GLY 62 n 62 GLY 62 A LYS 63 n 63 LYS 63 A ILE 64 n 64 ILE 64 A SER 65 n 65 SER 65 A LEU 66 n 66 LEU 66 A LYS 67 n 67 LYS 67 A GLY 68 n 68 GLY 68 A ARG 69 n 69 ARG 69 A ASP 70 n 70 ASP 70 A LEU 71 n 71 LEU 71 A ASP 72 n 72 ASP 72 A ARG 73 n 73 ARG 73 A GLN 74 n 74 GLN 74 A LYS 75 n 75 LYS 75 A GLN 76 n 76 GLN 76 A LYS 77 n 77 LYS 77 A LEU 78 n 78 LEU 78 A GLU 79 n 79 GLU 79 A ALA 80 n 80 ALA 80 A GLU 81 n 81 GLU 81 A GLY 82 n 82 GLY 82 A ILE 83 n 83 ILE 83 A GLU 84 n 84 GLU 84 A VAL 85 n 85 VAL 85 A SER 86 n 86 SER 86 A GLU 87 n 87 GLU 87 A ILE 88 n 88 ILE 88 A GLY 89 n 89 GLY 89 A LYS 90 n 90 LYS 90 A ILE 91 n 91 ILE 91 A ALA 92 n 92 ALA 92 A LEU 93 n 93 LEU 93 A ARG 94 n 94 ARG 94 A LYS 95 n 95 LYS 95 A TYR 96 n 96 TYR 96 A LYS 97 n 97 LYS 97 A TRP 98 n 98 TRP 98 A GLN 99 n 99 GLN 99 A PRO 100 n 100 PRO 100 A LEU 101 n 101 LEU 101 A GLU 102 n 102 GLU 102 A n 103 103 A n 104 104 A n 105 105 A n 106 106 A n 107 107 A n 108 108 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 21 A N SER 21 A O ILE 58 A O ILE 58 1 A HIS 103 A HIS 103 1 Y 1 A HIS 104 A HIS 104 1 Y 1 A HIS 105 A HIS 105 1 Y 1 A HIS 106 A HIS 106 1 Y 1 A HIS 107 A HIS 107 1 Y 1 A HIS 108 A HIS 108 1 Y 2 A HIS 103 A HIS 103 1 Y 2 A HIS 104 A HIS 104 1 Y 2 A HIS 105 A HIS 105 1 Y 2 A HIS 106 A HIS 106 1 Y 2 A HIS 107 A HIS 107 1 Y 2 A HIS 108 A HIS 108 1 Y 3 A HIS 103 A HIS 103 1 Y 3 A HIS 104 A HIS 104 1 Y 3 A HIS 105 A HIS 105 1 Y 3 A HIS 106 A HIS 106 1 Y 3 A HIS 107 A HIS 107 1 Y 3 A HIS 108 A HIS 108 1 Y 4 A HIS 103 A HIS 103 1 Y 4 A HIS 104 A HIS 104 1 Y 4 A HIS 105 A HIS 105 1 Y 4 A HIS 106 A HIS 106 1 Y 4 A HIS 107 A HIS 107 1 Y 4 A HIS 108 A HIS 108 1 Y 5 A HIS 103 A HIS 103 1 Y 5 A HIS 104 A HIS 104 1 Y 5 A HIS 105 A HIS 105 1 Y 5 A HIS 106 A HIS 106 1 Y 5 A HIS 107 A HIS 107 1 Y 5 A HIS 108 A HIS 108 1 Y 6 A HIS 103 A HIS 103 1 Y 6 A HIS 104 A HIS 104 1 Y 6 A HIS 105 A HIS 105 1 Y 6 A HIS 106 A HIS 106 1 Y 6 A HIS 107 A HIS 107 1 Y 6 A HIS 108 A HIS 108 1 Y 7 A HIS 103 A HIS 103 1 Y 7 A HIS 104 A HIS 104 1 Y 7 A HIS 105 A HIS 105 1 Y 7 A HIS 106 A HIS 106 1 Y 7 A HIS 107 A HIS 107 1 Y 7 A HIS 108 A HIS 108 1 Y 8 A HIS 103 A HIS 103 1 Y 8 A HIS 104 A HIS 104 1 Y 8 A HIS 105 A HIS 105 1 Y 8 A HIS 106 A HIS 106 1 Y 8 A HIS 107 A HIS 107 1 Y 8 A HIS 108 A HIS 108 1 Y 9 A HIS 103 A HIS 103 1 Y 9 A HIS 104 A HIS 104 1 Y 9 A HIS 105 A HIS 105 1 Y 9 A HIS 106 A HIS 106 1 Y 9 A HIS 107 A HIS 107 1 Y 9 A HIS 108 A HIS 108 1 Y 10 A HIS 103 A HIS 103 1 Y 10 A HIS 104 A HIS 104 1 Y 10 A HIS 105 A HIS 105 1 Y 10 A HIS 106 A HIS 106 1 Y 10 A HIS 107 A HIS 107 1 Y 10 A HIS 108 A HIS 108 1 Y 11 A HIS 103 A HIS 103 1 Y 11 A HIS 104 A HIS 104 1 Y 11 A HIS 105 A HIS 105 1 Y 11 A HIS 106 A HIS 106 1 Y 11 A HIS 107 A HIS 107 1 Y 11 A HIS 108 A HIS 108 1 Y 12 A HIS 103 A HIS 103 1 Y 12 A HIS 104 A HIS 104 1 Y 12 A HIS 105 A HIS 105 1 Y 12 A HIS 106 A HIS 106 1 Y 12 A HIS 107 A HIS 107 1 Y 12 A HIS 108 A HIS 108 1 Y 13 A HIS 103 A HIS 103 1 Y 13 A HIS 104 A HIS 104 1 Y 13 A HIS 105 A HIS 105 1 Y 13 A HIS 106 A HIS 106 1 Y 13 A HIS 107 A HIS 107 1 Y 13 A HIS 108 A HIS 108 1 Y 14 A HIS 103 A HIS 103 1 Y 14 A HIS 104 A HIS 104 1 Y 14 A HIS 105 A HIS 105 1 Y 14 A HIS 106 A HIS 106 1 Y 14 A HIS 107 A HIS 107 1 Y 14 A HIS 108 A HIS 108 1 Y 15 A HIS 103 A HIS 103 1 Y 15 A HIS 104 A HIS 104 1 Y 15 A HIS 105 A HIS 105 1 Y 15 A HIS 106 A HIS 106 1 Y 15 A HIS 107 A HIS 107 1 Y 15 A HIS 108 A HIS 108 1 Y 16 A HIS 103 A HIS 103 1 Y 16 A HIS 104 A HIS 104 1 Y 16 A HIS 105 A HIS 105 1 Y 16 A HIS 106 A HIS 106 1 Y 16 A HIS 107 A HIS 107 1 Y 16 A HIS 108 A HIS 108 1 Y 17 A HIS 103 A HIS 103 1 Y 17 A HIS 104 A HIS 104 1 Y 17 A HIS 105 A HIS 105 1 Y 17 A HIS 106 A HIS 106 1 Y 17 A HIS 107 A HIS 107 1 Y 17 A HIS 108 A HIS 108 1 Y 18 A HIS 103 A HIS 103 1 Y 18 A HIS 104 A HIS 104 1 Y 18 A HIS 105 A HIS 105 1 Y 18 A HIS 106 A HIS 106 1 Y 18 A HIS 107 A HIS 107 1 Y 18 A HIS 108 A HIS 108 1 Y 19 A HIS 103 A HIS 103 1 Y 19 A HIS 104 A HIS 104 1 Y 19 A HIS 105 A HIS 105 1 Y 19 A HIS 106 A HIS 106 1 Y 19 A HIS 107 A HIS 107 1 Y 19 A HIS 108 A HIS 108 1 Y 20 A HIS 103 A HIS 103 1 Y 20 A HIS 104 A HIS 104 1 Y 20 A HIS 105 A HIS 105 1 Y 20 A HIS 106 A HIS 106 1 Y 20 A HIS 107 A HIS 107 1 Y 20 A HIS 108 A HIS 108 1 Y 11 A A HA HH22 LYS ARG 17 56 1.27 1 A SER 60 -69.91 0.50 2 A TYR 35 -91.85 30.13 2 A GLU 84 -68.92 92.52 3 A LYS 17 -69.44 89.61 3 A ALA 92 -67.65 94.51 3 A PRO 100 -72.66 35.21 4 A LYS 17 -67.30 99.27 5 A LYS 17 -62.54 95.69 5 A TYR 35 -74.91 27.54 6 A LYS 17 -60.91 95.39 6 A PRO 53 -68.89 94.49 6 A PHE 55 -67.32 1.00 6 A LEU 101 -88.65 31.26 7 A ILE 58 -118.38 -168.89 8 A GLU 84 -67.64 92.03 9 A GLU 84 -68.17 95.92 10 A ASP 2 -173.99 128.07 10 A TYR 35 -141.89 21.50 10 A PRO 53 -66.01 95.36 10 A ILE 58 -115.94 -169.31 10 A GLU 84 -67.62 92.20 10 A ALA 92 -63.63 94.65 11 A GLN 3 68.80 -30.03 11 A LEU 101 -131.47 -66.55 12 A TYR 32 -140.28 58.09 12 A PRO 53 -65.13 95.51 12 A ALA 92 -69.02 92.83 13 A ASN 45 -150.62 14.17 13 A ILE 58 -123.27 -169.12 14 A LYS 17 -63.73 85.88 14 A TYR 35 -79.01 36.01 14 A ILE 58 -109.82 -169.81 17 A ILE 58 -125.18 -169.70 17 A GLN 99 -150.97 87.70 18 A LYS 19 -65.56 99.05 18 A PRO 33 -76.45 30.99 18 A PRO 47 -72.49 -165.92 18 A LYS 51 74.57 -47.91 18 A SER 65 -88.11 30.22 18 A GLU 84 -67.17 91.95 19 A TYR 35 -79.01 46.98 19 A PHE 55 -69.62 1.88 19 A SER 60 -65.18 4.48 20 A TYR 35 -83.52 36.88 20 A PRO 53 -68.23 94.61 20 A ALA 92 -62.62 95.96 20 A LEU 101 -160.19 23.20 lowest energy, model 1 1.7-mm microcryoprobe solution NMR structure of an O6-methylguanine DNA methyltransferase family protein from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium target VpR247. 1 N N A ASP 2 A ASP 2 HELX_P A HIS 13 A HIS 13 1 1 12 A TYR 23 A TYR 23 HELX_P A GLY 31 A GLY 31 1 2 9 A TYR 35 A TYR 35 HELX_P A GLY 44 A GLY 44 1 3 10 A PRO 53 A PRO 53 HELX_P A PHE 55 A PHE 55 5 4 3 A GLY 68 A GLY 68 HELX_P A ALA 80 A ALA 80 1 5 13 A ALA 92 A ALA 92 HELX_P A LYS 97 A LYS 97 1 6 6 TRANSFERASE Methods Development, solution NMR structure, DNA base repair, O6 methylguanine methyltransferase, NESG, PSI-2, Methyltransferase, Transferase, Structural Genomics, Protein Structure Initiative, Northeast Structural Genomics Consortium A6B4U8_VIBPA UNP 1 1 A6B4U8 MDQFLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGKISLKGRDLDRQKQKLEA EGIEVSEIGKIALRKYKWQP 1 100 2KIM 1 100 A6B4U8 A 1 1 100 1 expression tag LEU 101 2KIM A A6B4U8 UNP 101 1 expression tag GLU 102 2KIM A A6B4U8 UNP 102 1 expression tag HIS 103 2KIM A A6B4U8 UNP 103 1 expression tag HIS 104 2KIM A A6B4U8 UNP 104 1 expression tag HIS 105 2KIM A A6B4U8 UNP 105 1 expression tag HIS 106 2KIM A A6B4U8 UNP 106 1 expression tag HIS 107 2KIM A A6B4U8 UNP 107 1 expression tag HIS 108 2KIM A A6B4U8 UNP 108 2 parallel A SER 21 A SER 21 A THR 22 A THR 22 A VAL 57 A VAL 57 A ILE 58 A ILE 58