1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kandias, N.G.
Chasapis, C.T.
Bentrop, D.
Episkopou, V.
Spyroulias, G.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Proteins
PSFGEY
0867
0887-3585
80
1484
1489
10.1002/prot.24048
22411132
NMR-based insights into the conformational and interaction properties of Arkadia RING-H2 E3 Ub ligase.
2012
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
378
498
502
10.1016/j.bbrc.2008.11.055
19032943
High yield expression and NMR characterization of Arkadia E3 ubiquitin ligase RING-H2 finger domain.
2009
Chirality errors at CA centers of residues 1,2,3 and 65 in chain A of Model 1
7960.034
E3 ubiquitin-protein ligase Arkadia
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
RING finger protein 111
no
no
MKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
MKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
RNF111
9606
Homo sapiens
562
Escherichia coli
plasmid
pGEX
Recombinant RING finger polypeptide (RING-H2 type)
repository
Initial release
Version format compliance
Database references
1
0
2010-05-19
1
1
2011-07-13
1
2
2013-03-20
1H, 13C, and 15N Chemical Shift Assignments for the RING finger of the E3 ubiquitin ligase Arkadia
BMRB
Y
RCSB
2009-05-13
REL
REL
ZN
ZINC ION
target function
31
31
2D 1H-15N HSQC
2D 1H-13C HSQC
3D HN(CO)CA
3D HNCA
3D CBCA(CO)NH
3D HNCACB
3D HNCO
3D HCCH-TOCSY
3D HBHA(CO)NH
2D (HB)CB(CGCD)HDarom
2D 2J-edited 1H-15N HSQC
3D 1H-15N NOESY
3D 1H-13C NOESY
1.0
mM
[U-98% 13C; U-98% 15N]
50
mM
50
6.9
ambient
298
K
torsion angle dynamics
1
minimized average structure
1.0 mM [U-98% 13C; U-98% 15N] RING Finger monomer, 50 mM Pi, 90% H2O/10% D2O
90% H2O/10% D2O
Keller, R. et al.
chemical shift assignment
CARA
1.8.4
EARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON, SEIBEL,SINGH,WEINER,KOLLMAN
refinement
AMBER 4.1
600
Bruker
Avance
Bruker Avance
ZN
70
2
ZN
ZN
70
A
ZN
71
2
ZN
ZN
71
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
GLN
3
n
3
GLN
3
A
ASP
4
n
4
ASP
4
A
GLY
5
n
5
GLY
5
A
GLU
6
n
6
GLU
6
A
GLU
7
n
7
GLU
7
A
GLY
8
n
8
GLY
8
A
THR
9
n
9
THR
9
A
GLU
10
n
10
GLU
10
A
GLU
11
n
11
GLU
11
A
ASP
12
n
12
ASP
12
A
THR
13
n
13
THR
13
A
GLU
14
n
14
GLU
14
A
GLU
15
n
15
GLU
15
A
LYS
16
n
16
LYS
16
A
CYS
17
n
17
CYS
17
A
THR
18
n
18
THR
18
A
ILE
19
n
19
ILE
19
A
CYS
20
n
20
CYS
20
A
LEU
21
n
21
LEU
21
A
SER
22
n
22
SER
22
A
ILE
23
n
23
ILE
23
A
LEU
24
n
24
LEU
24
A
GLU
25
n
25
GLU
25
A
GLU
26
n
26
GLU
26
A
GLY
27
n
27
GLY
27
A
GLU
28
n
28
GLU
28
A
ASP
29
n
29
ASP
29
A
VAL
30
n
30
VAL
30
A
ARG
31
n
31
ARG
31
A
ARG
32
n
32
ARG
32
A
LEU
33
n
33
LEU
33
A
PRO
34
n
34
PRO
34
A
CYS
35
n
35
CYS
35
A
MET
36
n
36
MET
36
A
HIS
37
n
37
HIS
37
A
LEU
38
n
38
LEU
38
A
PHE
39
n
39
PHE
39
A
HIS
40
n
40
HIS
40
A
GLN
41
n
41
GLN
41
A
VAL
42
n
42
VAL
42
A
CYS
43
n
43
CYS
43
A
VAL
44
n
44
VAL
44
A
ASP
45
n
45
ASP
45
A
GLN
46
n
46
GLN
46
A
TRP
47
n
47
TRP
47
A
LEU
48
n
48
LEU
48
A
ILE
49
n
49
ILE
49
A
THR
50
n
50
THR
50
A
ASN
51
n
51
ASN
51
A
LYS
52
n
52
LYS
52
A
LYS
53
n
53
LYS
53
A
CYS
54
n
54
CYS
54
A
PRO
55
n
55
PRO
55
A
ILE
56
n
56
ILE
56
A
CYS
57
n
57
CYS
57
A
ARG
58
n
58
ARG
58
A
VAL
59
n
59
VAL
59
A
ASP
60
n
60
ASP
60
A
ILE
61
n
61
ILE
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
GLN
64
n
64
GLN
64
A
LEU
65
n
65
LEU
65
A
PRO
66
n
66
PRO
66
A
SER
67
n
67
SER
67
A
GLU
68
n
68
GLU
68
A
SER
69
n
69
SER
69
A
author_defined_assembly
1
monomeric
A
CYS
17
A
SG
CYS
17
1_555
A
ZN
70
B
ZN
ZN
1_555
A
CYS
20
A
SG
CYS
20
1_555
110.3
A
CYS
17
A
SG
CYS
17
1_555
A
ZN
70
B
ZN
ZN
1_555
A
HIS
40
A
ND1
HIS
40
1_555
112.5
A
CYS
20
A
SG
CYS
20
1_555
A
ZN
70
B
ZN
ZN
1_555
A
HIS
40
A
ND1
HIS
40
1_555
111.6
A
CYS
17
A
SG
CYS
17
1_555
A
ZN
70
B
ZN
ZN
1_555
A
CYS
43
A
SG
CYS
43
1_555
123.2
A
CYS
20
A
SG
CYS
20
1_555
A
ZN
70
B
ZN
ZN
1_555
A
CYS
43
A
SG
CYS
43
1_555
85.6
A
HIS
40
A
ND1
HIS
40
1_555
A
ZN
70
B
ZN
ZN
1_555
A
CYS
43
A
SG
CYS
43
1_555
110.6
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
71
C
ZN
ZN
1_555
A
HIS
37
A
ND1
HIS
37
1_555
113.4
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
71
C
ZN
ZN
1_555
A
CYS
54
A
SG
CYS
54
1_555
129.2
A
HIS
37
A
ND1
HIS
37
1_555
A
ZN
71
C
ZN
ZN
1_555
A
CYS
54
A
SG
CYS
54
1_555
115.4
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
71
C
ZN
ZN
1_555
A
CYS
57
A
SG
CYS
57
1_555
72.7
A
HIS
37
A
ND1
HIS
37
1_555
A
ZN
71
C
ZN
ZN
1_555
A
CYS
57
A
SG
CYS
57
1_555
111.7
A
CYS
54
A
SG
CYS
54
1_555
A
ZN
71
C
ZN
ZN
1_555
A
CYS
57
A
SG
CYS
57
1_555
77.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
31
A
N
ARG
31
A
O
PHE
39
A
O
PHE
39
1
A
CA
MET
1
WRONG HAND
1
A
CA
LYS
2
WRONG HAND
1
A
CA
GLN
3
WRONG HAND
1
A
CA
LEU
65
WRONG HAND
12
A
A
SG
SG
CYS
CYS
35
54
1.42
1
A
A
ASP
GLY
4
5
-136.80
1
A
A
ASP
THR
12
13
136.84
13
A
A
ASP
THR
12
13
142.55
18
A
A
GLU
ASP
11
12
-148.14
2
A
HIS
40
0.084
SIDE CHAIN
5
A
HIS
40
0.104
SIDE CHAIN
8
A
HIS
40
0.098
SIDE CHAIN
9
A
HIS
40
0.083
SIDE CHAIN
11
A
HIS
40
0.082
SIDE CHAIN
13
A
HIS
40
0.092
SIDE CHAIN
16
A
HIS
40
0.086
SIDE CHAIN
17
A
HIS
40
0.084
SIDE CHAIN
23
A
HIS
40
0.083
SIDE CHAIN
24
A
HIS
40
0.088
SIDE CHAIN
27
A
ARG
31
0.083
SIDE CHAIN
29
A
HIS
40
0.085
SIDE CHAIN
30
A
HIS
40
0.092
SIDE CHAIN
1
16.81
2.50
121.70
138.51
A
A
A
C
N
CA
MET
LYS
LYS
1
2
2
Y
12
11.63
1.10
114.20
125.83
A
A
A
CA
CB
SG
CYS
CYS
CYS
57
57
57
N
17
11.59
1.10
114.20
125.79
A
A
A
CA
CB
SG
CYS
CYS
CYS
57
57
57
N
18
11.70
1.10
114.20
125.90
A
A
A
CA
CB
SG
CYS
CYS
CYS
57
57
57
N
28
13.84
1.10
114.20
128.04
A
A
A
CA
CB
SG
CYS
CYS
CYS
57
57
57
N
1
A
LYS
2
-95.27
-119.68
1
A
GLN
3
-34.82
164.51
1
A
GLU
6
-43.14
109.15
1
A
GLU
10
-145.47
-120.55
1
A
LEU
21
34.18
51.40
1
A
PRO
34
-66.61
5.65
1
A
MET
36
164.26
-51.26
1
A
ASP
45
-68.55
-70.29
1
A
THR
50
-91.85
-76.99
1
A
ARG
58
84.41
-0.76
1
A
LEU
65
136.06
20.19
1
A
PRO
66
-79.95
-119.54
1
A
SER
67
-151.58
-80.33
2
A
GLU
6
53.77
103.48
2
A
GLU
10
-139.31
-64.10
2
A
LEU
21
44.96
20.12
2
A
MET
36
145.20
-46.97
2
A
THR
50
-88.27
-76.66
2
A
LYS
52
-75.11
35.86
2
A
ALA
63
41.89
-147.44
2
A
PRO
66
-89.24
41.48
2
A
SER
67
74.36
158.52
3
A
GLU
6
69.02
-72.05
3
A
GLU
11
50.77
-137.48
3
A
ASP
12
56.97
75.15
3
A
MET
36
156.69
-53.58
3
A
ASP
45
-70.59
-72.08
3
A
THR
50
-87.12
-74.41
3
A
LYS
52
-77.69
21.09
3
A
ILE
56
-88.20
-71.21
3
A
GLU
62
56.33
84.02
3
A
LEU
65
53.92
88.91
3
A
SER
67
68.25
155.29
3
A
GLU
68
-154.62
-65.53
4
A
GLN
3
-163.67
110.91
4
A
THR
9
-163.39
-63.45
4
A
GLU
11
30.43
86.60
4
A
ASP
12
-163.63
-66.05
4
A
THR
13
33.30
51.00
4
A
LEU
21
39.48
36.81
4
A
MET
36
147.15
-54.72
4
A
ASP
45
-69.16
-73.76
4
A
THR
50
-88.63
-76.50
4
A
ILE
56
-84.17
-72.95
4
A
GLU
62
177.23
59.11
4
A
ALA
63
46.64
-136.00
4
A
GLN
64
145.98
150.85
4
A
SER
67
-160.62
-67.42
4
A
GLU
68
63.66
151.04
5
A
GLU
11
59.06
179.72
5
A
ASP
12
42.47
79.80
5
A
THR
13
-95.90
59.33
5
A
GLU
14
-80.14
46.56
5
A
LYS
16
57.05
108.78
5
A
GLU
28
-111.64
-169.93
5
A
MET
36
153.69
-57.55
5
A
ASP
45
-70.47
-71.79
5
A
THR
50
-120.21
-60.63
5
A
ILE
56
-98.37
-77.96
5
A
GLU
62
59.38
94.85
5
A
LEU
65
27.48
73.19
6
A
LYS
2
-171.31
-51.45
6
A
GLN
3
75.18
77.68
6
A
LYS
16
-32.56
123.78
6
A
LEU
21
37.20
40.81
6
A
GLU
26
-66.09
81.53
6
A
MET
36
150.88
-43.24
6
A
ASP
45
-68.48
-73.99
6
A
THR
50
-84.10
-78.42
6
A
LYS
52
-79.15
32.66
6
A
ILE
56
-77.63
-76.50
6
A
GLU
62
-179.56
94.82
6
A
ALA
63
44.31
-122.32
7
A
THR
13
-105.84
54.38
7
A
MET
36
151.05
-61.06
7
A
ASP
45
-70.38
-73.12
7
A
ILE
56
-87.20
-72.80
7
A
SER
67
59.89
-153.43
8
A
GLU
11
53.17
-156.97
8
A
ASP
12
25.32
56.80
8
A
LYS
16
69.64
157.45
8
A
LEU
21
36.72
47.78
8
A
CYS
35
-27.67
-63.01
8
A
MET
36
148.64
-52.87
8
A
ASP
45
-66.09
-75.16
8
A
GLU
62
57.27
82.76
9
A
GLU
10
53.65
-175.69
9
A
GLU
14
-84.28
46.11
9
A
LYS
16
58.98
100.41
9
A
CYS
35
-78.17
-71.52
9
A
MET
36
158.22
-58.30
9
A
ASP
45
-68.23
-72.69
9
A
THR
50
-76.56
-75.49
9
A
LYS
52
-97.52
31.78
9
A
ILE
56
-102.38
-72.26
9
A
GLU
62
-177.26
122.05
9
A
ALA
63
45.86
-142.58
9
A
PRO
66
-68.89
-79.55
9
A
SER
67
146.14
103.21
10
A
GLN
3
58.18
-176.97
10
A
ASP
4
37.97
-140.67
10
A
GLU
6
-145.56
-74.90
10
A
LEU
21
37.71
44.61
10
A
ILE
23
-48.05
150.17
10
A
MET
36
153.11
-56.46
10
A
ASP
45
-69.42
-72.64
10
A
THR
50
-77.56
-70.47
10
A
LYS
52
-76.38
24.49
10
A
ILE
56
-89.64
-71.57
10
A
GLU
62
-68.00
-179.80
10
A
SER
67
67.75
-175.86
11
A
GLN
3
57.10
176.24
11
A
ASP
4
72.53
163.34
11
A
GLU
6
94.90
83.76
11
A
GLU
11
59.10
-166.03
11
A
ASP
12
28.48
67.20
11
A
LYS
16
64.73
155.70
11
A
GLU
28
-142.85
-159.92
11
A
MET
36
154.78
-50.03
11
A
ASP
45
-68.48
-71.74
11
A
THR
50
-84.09
-75.34
11
A
LYS
52
-78.66
30.92
11
A
ILE
56
-93.87
-69.29
12
A
GLU
10
74.41
122.61
12
A
GLU
11
48.70
-141.17
12
A
ASP
12
21.21
60.74
12
A
LYS
16
67.16
159.25
12
A
LEU
21
36.29
53.45
12
A
CYS
35
-43.97
-9.48
12
A
MET
36
84.79
-41.58
12
A
THR
50
-86.85
-79.74
12
A
LYS
52
-82.44
37.04
12
A
GLU
62
179.17
92.37
12
A
ALA
63
45.28
-116.91
13
A
GLN
3
-69.18
-179.22
13
A
GLU
10
-143.86
-69.76
13
A
LEU
21
36.59
47.29
13
A
MET
36
154.36
-64.77
13
A
ASP
45
-69.52
-72.50
13
A
THR
50
-88.96
-75.94
13
A
LYS
52
-76.99
35.69
13
A
GLN
64
59.87
164.94
13
A
LEU
65
-153.27
67.95
13
A
GLU
68
-159.68
-148.42
14
A
LYS
2
73.28
-75.04
14
A
ASP
4
49.13
78.97
14
A
GLU
6
51.49
87.93
14
A
ASP
12
71.61
-70.39
14
A
THR
13
36.31
56.58
14
A
LYS
16
73.83
147.91
14
A
LEU
21
37.38
46.72
14
A
MET
36
146.16
-40.37
14
A
ASP
45
-68.84
-72.10
14
A
THR
50
-128.78
-56.29
14
A
LYS
52
-141.47
21.63
14
A
ILE
56
-89.80
-70.37
15
A
GLU
10
-161.33
-62.30
15
A
ASP
12
-150.29
54.94
15
A
LYS
16
65.77
144.75
15
A
MET
36
147.79
-45.76
15
A
ASP
45
-67.75
-77.64
15
A
THR
50
-77.21
-89.18
15
A
ILE
56
-99.29
-71.04
15
A
GLU
62
-177.90
39.33
15
A
ALA
63
46.77
-137.88
15
A
GLN
64
58.52
-171.70
15
A
SER
67
68.81
-81.40
15
A
GLU
68
-151.92
-59.59
16
A
GLN
3
53.93
-171.96
16
A
ASP
4
56.81
85.14
16
A
GLU
6
-147.68
13.52
16
A
LYS
16
53.48
168.28
16
A
LEU
21
34.01
49.23
16
A
MET
36
154.42
-44.19
16
A
THR
50
-89.13
-73.87
16
A
LYS
52
-72.88
27.02
16
A
GLU
62
-168.37
-166.01
16
A
LEU
65
102.45
71.19
17
A
ASP
4
35.07
87.33
17
A
LYS
16
66.84
121.21
17
A
GLU
26
67.28
161.99
17
A
GLU
28
-72.38
-163.94
17
A
PRO
34
-65.37
1.96
17
A
MET
36
150.14
-41.11
17
A
ASP
45
-70.16
-70.07
17
A
GLU
62
-172.65
-166.12
18
A
GLN
3
64.35
133.30
18
A
GLU
7
63.06
170.51
18
A
GLU
10
-128.04
-53.09
18
A
ASP
12
-156.24
74.97
18
A
LEU
21
38.56
42.43
18
A
MET
36
155.99
-63.95
18
A
ASP
45
-69.48
-71.10
18
A
THR
50
-121.78
-51.15
18
A
GLU
62
178.80
-167.18
18
A
SER
67
78.70
146.54
18
A
GLU
68
-154.23
-62.25
19
A
ASP
4
59.95
168.24
19
A
GLU
6
-159.30
-55.34
19
A
GLU
10
-149.51
-55.30
19
A
ASP
12
153.98
69.06
19
A
THR
13
-82.71
46.65
19
A
LYS
16
-39.85
128.92
19
A
LEU
21
43.02
26.75
19
A
MET
36
154.62
-49.66
19
A
ASP
45
-68.15
-72.52
19
A
THR
50
-84.27
-76.78
19
A
LYS
52
-78.80
28.47
19
A
ILE
56
-96.21
-77.48
19
A
SER
67
-153.51
78.88
20
A
ASP
12
141.90
138.24
20
A
GLU
14
-82.76
38.49
20
A
LYS
16
58.08
95.69
20
A
LEU
21
35.97
41.72
20
A
MET
36
163.61
-64.39
20
A
ASP
45
-69.37
-73.47
20
A
ILE
56
-94.35
-69.24
20
A
GLU
62
55.21
75.73
20
A
SER
67
66.55
-80.88
20
A
GLU
68
73.29
132.60
21
A
GLN
3
54.35
176.82
21
A
GLU
7
68.50
174.12
21
A
GLU
10
-159.72
-153.22
21
A
LYS
16
68.45
160.07
21
A
LEU
21
33.80
52.68
21
A
PRO
34
-59.70
-8.73
21
A
MET
36
145.65
-41.30
21
A
GLU
62
69.68
97.29
21
A
ALA
63
53.61
-161.48
22
A
LYS
2
-127.70
-90.94
22
A
THR
9
-155.90
10.28
22
A
THR
13
-157.65
45.80
22
A
LYS
16
-17.27
118.50
22
A
LEU
21
38.13
42.09
22
A
PRO
34
-66.38
8.22
22
A
MET
36
146.06
-49.78
22
A
ASP
45
-68.38
-70.45
22
A
THR
50
-88.60
-71.95
22
A
LYS
52
-77.06
31.32
22
A
GLU
62
179.21
178.43
22
A
SER
67
-158.83
81.70
23
A
GLN
3
71.86
176.77
23
A
ASP
4
34.88
71.41
23
A
GLU
6
78.06
-57.51
23
A
GLU
10
56.63
-158.65
23
A
ASP
12
64.29
143.41
23
A
THR
13
-147.76
51.71
23
A
MET
36
155.18
-43.65
23
A
THR
50
-85.18
-72.64
23
A
LYS
52
-72.98
20.03
23
A
ILE
56
-83.75
-72.16
23
A
GLU
62
173.56
112.33
23
A
ALA
63
49.27
-155.28
23
A
GLN
64
-150.27
58.28
24
A
LYS
2
84.72
108.15
24
A
GLU
11
48.79
15.45
24
A
ASP
12
-164.03
104.17
24
A
THR
13
-107.44
48.27
24
A
GLU
15
-152.82
81.47
24
A
LYS
16
70.12
147.90
24
A
GLU
26
-58.53
107.77
24
A
MET
36
146.62
-55.38
24
A
THR
50
-76.19
-80.43
24
A
ILE
56
-93.61
-73.63
24
A
GLN
64
59.86
-179.05
24
A
SER
67
72.62
157.32
25
A
LYS
2
-109.80
-100.24
25
A
GLN
3
55.49
175.22
25
A
GLU
10
57.64
178.89
25
A
GLU
11
-93.12
-94.09
25
A
LYS
16
67.04
115.55
25
A
LEU
21
37.45
43.42
25
A
PRO
34
-66.34
0.87
25
A
MET
36
164.52
-48.27
25
A
ASP
45
-69.32
-73.74
25
A
THR
50
-86.45
-74.55
25
A
LYS
52
-77.38
27.52
25
A
GLU
62
57.52
72.12
25
A
SER
67
-150.38
-48.52
26
A
LYS
2
-173.60
-127.77
26
A
GLN
3
-161.70
88.25
26
A
ASP
4
179.75
174.74
26
A
GLU
6
-75.70
-86.36
26
A
THR
9
172.81
-23.28
26
A
ASP
12
57.11
71.10
26
A
LYS
16
-38.31
124.53
26
A
LEU
21
39.08
35.46
26
A
MET
36
148.96
-51.48
26
A
ASP
45
-69.01
-72.26
26
A
THR
50
-139.70
-48.93
26
A
ILE
56
-97.07
-77.18
26
A
GLU
62
-178.84
-174.36
26
A
ALA
63
-119.23
-161.27
27
A
GLN
3
41.01
79.00
27
A
ASP
12
-59.70
89.93
27
A
GLU
15
-158.95
-158.38
27
A
LEU
21
40.92
22.08
27
A
MET
36
154.89
-52.87
27
A
ASP
45
-69.04
-70.88
27
A
THR
50
-81.48
-73.64
27
A
GLU
62
-172.01
31.39
27
A
ALA
63
45.23
-121.72
27
A
GLN
64
33.99
55.21
27
A
LEU
65
65.90
152.41
27
A
GLU
68
79.01
123.24
28
A
LYS
2
60.22
65.76
28
A
GLN
3
-150.20
52.43
28
A
GLU
7
76.55
113.20
28
A
GLU
10
-158.20
-153.62
28
A
THR
13
23.96
53.50
28
A
GLU
15
-103.64
-163.54
28
A
CYS
35
-51.66
-70.21
28
A
MET
36
162.52
-61.93
28
A
ASP
45
-70.70
-71.29
28
A
THR
50
-83.91
-72.06
28
A
GLU
68
-145.75
-59.84
29
A
GLU
6
74.57
94.78
29
A
GLU
7
68.54
-169.49
29
A
GLU
11
-134.44
-53.73
29
A
ASP
12
-65.00
82.24
29
A
LYS
16
74.97
152.56
29
A
LEU
21
38.09
38.79
29
A
MET
36
149.03
-57.92
29
A
ILE
56
-103.59
-70.12
29
A
GLU
62
58.98
86.89
29
A
PRO
66
-80.09
-117.53
29
A
SER
67
-160.72
87.97
30
A
GLN
3
-69.58
87.28
30
A
GLU
10
-154.03
51.86
30
A
ASP
12
-161.18
69.92
30
A
LEU
21
38.90
41.09
30
A
MET
36
146.83
-62.46
30
A
ASP
45
-68.72
-74.07
30
A
LYS
52
-70.11
25.95
30
A
ILE
56
-88.46
-71.84
31
A
LYS
2
176.08
109.03
31
A
GLN
3
178.66
87.72
31
A
ASP
12
-153.17
-53.04
31
A
LYS
16
66.96
150.63
31
A
LEU
21
66.87
-53.63
31
A
MET
36
149.80
-54.11
31
A
ASP
45
-68.32
-74.85
31
A
LYS
52
-79.89
27.53
31
A
ILE
56
-97.59
-72.68
E3 ubiquitin-protein ligase Arkadia
minimized average
Solution structure of Arkadia RING-H2 finger domain
1
N
N
2
N
N
2
N
N
A
GLN
41
A
GLN
41
HELX_P
A
ASN
51
A
ASN
51
1
1
11
disulf
2.829
A
CYS
20
A
SG
CYS
20
1_555
A
CYS
43
A
SG
CYS
43
1_555
disulf
2.511
A
CYS
35
A
SG
CYS
35
1_555
A
CYS
57
A
SG
CYS
57
1_555
disulf
2.663
A
CYS
54
A
SG
CYS
54
1_555
A
CYS
57
A
SG
CYS
57
1_555
metalc
2.132
A
CYS
17
A
SG
CYS
17
1_555
A
ZN
70
B
ZN
ZN
1_555
metalc
2.082
A
CYS
20
A
SG
CYS
20
1_555
A
ZN
70
B
ZN
ZN
1_555
metalc
2.072
A
CYS
35
A
SG
CYS
35
1_555
A
ZN
71
C
ZN
ZN
1_555
metalc
2.123
A
HIS
37
A
ND1
HIS
37
1_555
A
ZN
71
C
ZN
ZN
1_555
metalc
2.112
A
HIS
40
A
ND1
HIS
40
1_555
A
ZN
70
B
ZN
ZN
1_555
metalc
2.082
A
CYS
43
A
SG
CYS
43
1_555
A
ZN
70
B
ZN
ZN
1_555
metalc
2.115
A
CYS
54
A
SG
CYS
54
1_555
A
ZN
71
C
ZN
ZN
1_555
metalc
2.164
A
CYS
57
A
SG
CYS
57
1_555
A
ZN
71
C
ZN
ZN
1_555
METAL BINDING PROTEIN
ARKADIA, RING-H2 FINGER, E3 LIGASE, ZN BINDING DOMAIN, Metal-binding, Zinc-finger, METAL BINDING PROTEIN
A
MET
1
A
MET
1
1
A
LYS
2
A
LYS
2
19.37
A
LYS
2
A
LYS
2
1
A
GLN
3
A
GLN
3
-7.52
A
GLU
6
A
GLU
6
1
A
GLU
7
A
GLU
7
-20.64
A
GLY
8
A
GLY
8
1
A
THR
9
A
THR
9
-17.28
A
GLN
64
A
GLN
64
1
A
LEU
65
A
LEU
65
17.24
A
SER
67
A
SER
67
1
A
GLU
68
A
GLU
68
-21.90
RN111_HUMAN
UNP
1
927
Q6ZNA4
KQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES
927
994
2KIZ
2
69
Q6ZNA4
A
1
2
69
1
INITIATING METHIONINE
MET
1
2KIZ
A
Q6ZNA4
UNP
1
2
anti-parallel
A
VAL
30
A
VAL
30
A
ARG
32
A
ARG
32
A
LEU
38
A
LEU
38
A
HIS
40
A
HIS
40
BINDING SITE FOR RESIDUE ZN A 70
Software
4
BINDING SITE FOR RESIDUE ZN A 71
Software
4
A
CYS
17
A
CYS
17
4
1_555
A
CYS
20
A
CYS
20
4
1_555
A
HIS
40
A
HIS
40
4
1_555
A
CYS
43
A
CYS
43
4
1_555
A
CYS
35
A
CYS
35
4
1_555
A
HIS
37
A
HIS
37
4
1_555
A
CYS
54
A
CYS
54
4
1_555
A
CYS
57
A
CYS
57
4
1_555