1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Van Melckebeke, H. Wasmer, C. Lange, A. AB, E. Loquet, A. Meier, B.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Am.Chem.Soc. JACSAT 0004 0002-7863 132 13765 13775 10.1021/ja104213j 20828131 Atomic-Resolution Three-Dimensional Structure of HET-s(218-289) Amyloid Fibrils by Solid-State NMR Spectroscopy 2010 US Science SCIEAS 0038 0036-8075 319 1523 1526 10.1126/science.1151839 18339938 Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core 2008 GE Chembiochem 1439-4227 10 1657 1665 10.1002/cbic.200900019 19504509 A combined solid-state NMR and MD characterization of the stability and dynamics of the HET-s(218-289) prion in its amyloid conformation 2009 8667.651 Small s protein C-TERMINAL PRION FORMING DOMAIN of HET-s, RESIDUES 218-289 3 man polymer HET-s no no MKIDAIVGRNSAKDIRTEERARVQLGNVVTAAALHGGIRISDQTTNSVETVVGKGESRVLIGNEYGGKGFWDNHHHHHH MKIDAIVGRNSAKDIRTEERARVQLGNVVTAAALHGGIRISDQTTNSVETVVGKGESRVLIGNEYGGKGFWDNHHHHHH A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample small s 5145 Podospora anserina 511693 Escherichia coli BL21 PET-24A vector Three consecutive HET-s(218-289) prion proteins in their amyloid conformation. repository Initial release Version format compliance 1 0 2010-06-02 1 1 2011-07-13 Completed chemical shift assignment of HET-s(218-289) First HET-s(218-289) structure First chemical shift assignment of HET-s(218-289) BMRB Y PDBJ 2009-05-20 REL REL THE STUDY HAS BEEN PERFORMED BY SOLID-STATE NMR. structures with the lowest energy 200 20 1 PDSD PDSD PDSD PAR CHHC CHHC NHHC NHHC PAIN 100 % [U-100% 13C; U-100% 15N] 100 % [U-100% 2-13C; U-100% 15N] 40 % [U-100% 2-13C; U-100% 15N] 60 % 40 % [U-100% 1,3-13C; U-100% 15N] 60 % 50 % [U-100% 15N] 50 % [U-100% 13C] 40 % [U-100% 13C; U-100% 15N] 60 % 0 7.5 AMBIENT 278 K CNS water refinement simulated annealing, TORSION ANGLE DYNAMICS 1 lowest energy 100% [U-100% 13C; U-100% 15N] HET-s(218-289)-1, 100% H2O 100% H2O 100% [U-100% 2-13C; U-100% 15N] HET-s(218-289)-2, 100% H2O 100% H2O 40% [U-100% 2-13C; U-100% 15N] HET-s(218-289)-3, 60% unlabelled HET-s(218-289)-4, 100% H2O 100% H2O 40% [U-100% 1,3-13C; U-100% 15N] HET-s(218-289)-5, 60% unlabelled HET-s(218-289)-6, 100% H2O 100% H2O 50% [U-100% 15N] HET-s(218-289)-7, 50% [U-100% 13C] HET-s(218-289)-8, 100% H2O 100% H2O 40% [U-100% 13C; U-100% 15N] HET-s(218-289)-9, 60% unlabelled HET-s(218-289)-10, 100% H2O 100% H2O GUNTERT, MUMENTHALER structure calculation CYANA Bruker Biospin processing TOPSPIN Koradi, Billeter and Wuthrich data analysis MOLMOL Laskowski and MacArthur data analysis PROCHECKNMR Keller and Wuthrich peak picking CARA Bruker Biospin processing XWINNMR refinement CNS 850 Bruker Avance BRUKER AVANCE 600 Bruker Avance BRUKER AVANCE MET 217 n 1 MET 217 A LYS 218 n 2 LYS 218 A ILE 219 n 3 ILE 219 A ASP 220 n 4 ASP 220 A ALA 221 n 5 ALA 221 A ILE 222 n 6 ILE 222 A VAL 223 n 7 VAL 223 A GLY 224 n 8 GLY 224 A ARG 225 n 9 ARG 225 A ASN 226 n 10 ASN 226 A SER 227 n 11 SER 227 A ALA 228 n 12 ALA 228 A LYS 229 n 13 LYS 229 A ASP 230 n 14 ASP 230 A ILE 231 n 15 ILE 231 A ARG 232 n 16 ARG 232 A THR 233 n 17 THR 233 A GLU 234 n 18 GLU 234 A GLU 235 n 19 GLU 235 A ARG 236 n 20 ARG 236 A ALA 237 n 21 ALA 237 A ARG 238 n 22 ARG 238 A VAL 239 n 23 VAL 239 A GLN 240 n 24 GLN 240 A LEU 241 n 25 LEU 241 A GLY 242 n 26 GLY 242 A ASN 243 n 27 ASN 243 A VAL 244 n 28 VAL 244 A VAL 245 n 29 VAL 245 A THR 246 n 30 THR 246 A ALA 247 n 31 ALA 247 A ALA 248 n 32 ALA 248 A ALA 249 n 33 ALA 249 A LEU 250 n 34 LEU 250 A HIS 251 n 35 HIS 251 A GLY 252 n 36 GLY 252 A GLY 253 n 37 GLY 253 A ILE 254 n 38 ILE 254 A ARG 255 n 39 ARG 255 A ILE 256 n 40 ILE 256 A SER 257 n 41 SER 257 A ASP 258 n 42 ASP 258 A GLN 259 n 43 GLN 259 A THR 260 n 44 THR 260 A THR 261 n 45 THR 261 A ASN 262 n 46 ASN 262 A SER 263 n 47 SER 263 A VAL 264 n 48 VAL 264 A GLU 265 n 49 GLU 265 A THR 266 n 50 THR 266 A VAL 267 n 51 VAL 267 A VAL 268 n 52 VAL 268 A GLY 269 n 53 GLY 269 A LYS 270 n 54 LYS 270 A GLY 271 n 55 GLY 271 A GLU 272 n 56 GLU 272 A SER 273 n 57 SER 273 A ARG 274 n 58 ARG 274 A VAL 275 n 59 VAL 275 A LEU 276 n 60 LEU 276 A ILE 277 n 61 ILE 277 A GLY 278 n 62 GLY 278 A ASN 279 n 63 ASN 279 A GLU 280 n 64 GLU 280 A TYR 281 n 65 TYR 281 A GLY 282 n 66 GLY 282 A GLY 283 n 67 GLY 283 A LYS 284 n 68 LYS 284 A GLY 285 n 69 GLY 285 A PHE 286 n 70 PHE 286 A TRP 287 n 71 TRP 287 A ASP 288 n 72 ASP 288 A ASN 289 n 73 ASN 289 A HIS 290 n 74 HIS 290 A HIS 291 n 75 HIS 291 A HIS 292 n 76 HIS 292 A HIS 293 n 77 HIS 293 A HIS 294 n 78 HIS 294 A HIS 295 n 79 HIS 295 A MET 217 n 1 MET 217 B LYS 218 n 2 LYS 218 B ILE 219 n 3 ILE 219 B ASP 220 n 4 ASP 220 B ALA 221 n 5 ALA 221 B ILE 222 n 6 ILE 222 B VAL 223 n 7 VAL 223 B GLY 224 n 8 GLY 224 B ARG 225 n 9 ARG 225 B ASN 226 n 10 ASN 226 B SER 227 n 11 SER 227 B ALA 228 n 12 ALA 228 B LYS 229 n 13 LYS 229 B ASP 230 n 14 ASP 230 B ILE 231 n 15 ILE 231 B ARG 232 n 16 ARG 232 B THR 233 n 17 THR 233 B GLU 234 n 18 GLU 234 B GLU 235 n 19 GLU 235 B ARG 236 n 20 ARG 236 B ALA 237 n 21 ALA 237 B ARG 238 n 22 ARG 238 B VAL 239 n 23 VAL 239 B GLN 240 n 24 GLN 240 B LEU 241 n 25 LEU 241 B GLY 242 n 26 GLY 242 B ASN 243 n 27 ASN 243 B VAL 244 n 28 VAL 244 B VAL 245 n 29 VAL 245 B THR 246 n 30 THR 246 B ALA 247 n 31 ALA 247 B ALA 248 n 32 ALA 248 B ALA 249 n 33 ALA 249 B LEU 250 n 34 LEU 250 B HIS 251 n 35 HIS 251 B GLY 252 n 36 GLY 252 B GLY 253 n 37 GLY 253 B ILE 254 n 38 ILE 254 B ARG 255 n 39 ARG 255 B ILE 256 n 40 ILE 256 B SER 257 n 41 SER 257 B ASP 258 n 42 ASP 258 B GLN 259 n 43 GLN 259 B THR 260 n 44 THR 260 B THR 261 n 45 THR 261 B ASN 262 n 46 ASN 262 B SER 263 n 47 SER 263 B VAL 264 n 48 VAL 264 B GLU 265 n 49 GLU 265 B THR 266 n 50 THR 266 B VAL 267 n 51 VAL 267 B VAL 268 n 52 VAL 268 B GLY 269 n 53 GLY 269 B LYS 270 n 54 LYS 270 B GLY 271 n 55 GLY 271 B GLU 272 n 56 GLU 272 B SER 273 n 57 SER 273 B ARG 274 n 58 ARG 274 B VAL 275 n 59 VAL 275 B LEU 276 n 60 LEU 276 B ILE 277 n 61 ILE 277 B GLY 278 n 62 GLY 278 B ASN 279 n 63 ASN 279 B GLU 280 n 64 GLU 280 B TYR 281 n 65 TYR 281 B GLY 282 n 66 GLY 282 B GLY 283 n 67 GLY 283 B LYS 284 n 68 LYS 284 B GLY 285 n 69 GLY 285 B PHE 286 n 70 PHE 286 B TRP 287 n 71 TRP 287 B ASP 288 n 72 ASP 288 B ASN 289 n 73 ASN 289 B HIS 290 n 74 HIS 290 B HIS 291 n 75 HIS 291 B HIS 292 n 76 HIS 292 B HIS 293 n 77 HIS 293 B HIS 294 n 78 HIS 294 B HIS 295 n 79 HIS 295 B MET 217 n 1 MET 217 C LYS 218 n 2 LYS 218 C ILE 219 n 3 ILE 219 C ASP 220 n 4 ASP 220 C ALA 221 n 5 ALA 221 C ILE 222 n 6 ILE 222 C VAL 223 n 7 VAL 223 C GLY 224 n 8 GLY 224 C ARG 225 n 9 ARG 225 C ASN 226 n 10 ASN 226 C SER 227 n 11 SER 227 C ALA 228 n 12 ALA 228 C LYS 229 n 13 LYS 229 C ASP 230 n 14 ASP 230 C ILE 231 n 15 ILE 231 C ARG 232 n 16 ARG 232 C THR 233 n 17 THR 233 C GLU 234 n 18 GLU 234 C GLU 235 n 19 GLU 235 C ARG 236 n 20 ARG 236 C ALA 237 n 21 ALA 237 C ARG 238 n 22 ARG 238 C VAL 239 n 23 VAL 239 C GLN 240 n 24 GLN 240 C LEU 241 n 25 LEU 241 C GLY 242 n 26 GLY 242 C ASN 243 n 27 ASN 243 C VAL 244 n 28 VAL 244 C VAL 245 n 29 VAL 245 C THR 246 n 30 THR 246 C ALA 247 n 31 ALA 247 C ALA 248 n 32 ALA 248 C ALA 249 n 33 ALA 249 C LEU 250 n 34 LEU 250 C HIS 251 n 35 HIS 251 C GLY 252 n 36 GLY 252 C GLY 253 n 37 GLY 253 C ILE 254 n 38 ILE 254 C ARG 255 n 39 ARG 255 C ILE 256 n 40 ILE 256 C SER 257 n 41 SER 257 C ASP 258 n 42 ASP 258 C GLN 259 n 43 GLN 259 C THR 260 n 44 THR 260 C THR 261 n 45 THR 261 C ASN 262 n 46 ASN 262 C SER 263 n 47 SER 263 C VAL 264 n 48 VAL 264 C GLU 265 n 49 GLU 265 C THR 266 n 50 THR 266 C VAL 267 n 51 VAL 267 C VAL 268 n 52 VAL 268 C GLY 269 n 53 GLY 269 C LYS 270 n 54 LYS 270 C GLY 271 n 55 GLY 271 C GLU 272 n 56 GLU 272 C SER 273 n 57 SER 273 C ARG 274 n 58 ARG 274 C VAL 275 n 59 VAL 275 C LEU 276 n 60 LEU 276 C ILE 277 n 61 ILE 277 C GLY 278 n 62 GLY 278 C ASN 279 n 63 ASN 279 C GLU 280 n 64 GLU 280 C TYR 281 n 65 TYR 281 C GLY 282 n 66 GLY 282 C GLY 283 n 67 GLY 283 C LYS 284 n 68 LYS 284 C GLY 285 n 69 GLY 285 C PHE 286 n 70 PHE 286 C TRP 287 n 71 TRP 287 C ASP 288 n 72 ASP 288 C ASN 289 n 73 ASN 289 C HIS 290 n 74 HIS 290 C HIS 291 n 75 HIS 291 C HIS 292 n 76 HIS 292 C HIS 293 n 77 HIS 293 C HIS 294 n 78 HIS 294 C HIS 295 n 79 HIS 295 C software_defined_assembly PISA 3 trimeric 8133.4 -19.3 11360.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASP 230 A N ASP 14 A O GLU 265 A O GLU 49 A N SER 263 A N SER 47 B O ALA 228 B O ALA 12 B N ASP 230 B N ASP 14 B O GLU 265 B O GLU 49 B N VAL 268 B N VAL 52 C O THR 233 C O THR 17 C N ASP 230 C N ASP 14 C O GLU 265 C O GLU 49 A N GLN 240 A N GLN 24 A O ILE 277 A O ILE 61 A N GLY 278 A N GLY 62 B O LEU 241 B O LEU 25 B N GLN 240 B N GLN 24 B O ILE 277 B O ILE 61 B N GLY 278 B N GLY 62 C O LEU 241 C O LEU 25 C N GLN 240 C N GLN 24 C O ILE 277 C O ILE 61 2 A B OD2 HZ1 ASP LYS 258 218 1.58 5 C C OE2 HZ2 GLU LYS 234 270 1.57 5 B B OE2 HZ3 GLU LYS 234 270 1.57 7 B B HE OE2 ARG GLU 236 272 1.55 7 A A HE OE2 ARG GLU 236 272 1.59 7 C C HE OE2 ARG GLU 236 272 1.59 8 B B OE2 HZ2 GLU LYS 234 270 1.56 8 C C OE1 HZ1 GLU LYS 235 270 1.58 8 B B HZ3 OD1 LYS ASP 284 288 1.59 8 C C HH21 OE1 ARG GLU 232 234 1.59 8 B C OE1 HZ3 GLU LYS 265 229 1.60 9 C C OE2 HZ2 GLU LYS 235 270 1.59 11 A A OE1 HZ1 GLU LYS 234 270 1.55 11 A A HH11 OE2 ARG GLU 236 272 1.55 12 C C OE1 HH21 GLU ARG 272 274 1.59 13 B B OE1 HZ1 GLU LYS 235 270 1.56 13 B C OE2 HZ2 GLU LYS 265 229 1.57 13 C C HH12 OE2 ARG GLU 238 272 1.59 13 A B OE2 HZ2 GLU LYS 265 229 1.60 14 B B OE2 HZ1 GLU LYS 235 270 1.55 15 A B OD1 HH21 ASP ARG 288 238 1.57 15 A B OD1 HH12 ASP ARG 258 255 1.58 16 C C OE2 HZ2 GLU LYS 234 270 1.54 16 C C HZ1 OD2 LYS ASP 284 288 1.56 16 B B HZ2 OD2 LYS ASP 284 288 1.58 17 A B HG1 OD2 THR ASP 260 258 1.58 17 C C HZ3 OE1 LYS GLU 229 265 1.59 18 A B HZ3 OE2 LYS GLU 284 280 1.54 18 A A OE1 HZ2 GLU LYS 235 270 1.54 18 B B OE2 HZ3 GLU LYS 235 270 1.54 18 B C HZ3 OE2 LYS GLU 284 280 1.55 18 A A HE OE1 ARG GLU 236 272 1.60 19 B C OD1 HG ASP SER 258 257 1.60 20 C C OE2 HZ2 GLU LYS 235 270 1.57 20 C C OE2 HZ1 GLU LYS 234 270 1.58 20 C C HH21 OE1 ARG GLU 232 234 1.60 3 C ARG 236 0.104 SIDE CHAIN 3 C ARG 238 0.077 SIDE CHAIN 7 A ARG 238 0.078 SIDE CHAIN 7 B ARG 238 0.092 SIDE CHAIN 7 C ARG 255 0.075 SIDE CHAIN 8 B ARG 274 0.075 SIDE CHAIN 8 C ARG 225 0.080 SIDE CHAIN 9 B ARG 274 0.093 SIDE CHAIN 9 C ARG 236 0.109 SIDE CHAIN 9 C ARG 238 0.075 SIDE CHAIN 10 B ARG 232 0.092 SIDE CHAIN 10 B ARG 274 0.079 SIDE CHAIN 11 A ARG 225 0.081 SIDE CHAIN 11 A ARG 238 0.089 SIDE CHAIN 11 A ARG 274 0.115 SIDE CHAIN 11 C ARG 236 0.108 SIDE CHAIN 14 B ARG 238 0.077 SIDE CHAIN 15 A ARG 238 0.072 SIDE CHAIN 15 C ARG 236 0.079 SIDE CHAIN 17 A ARG 236 0.092 SIDE CHAIN 17 A ARG 238 0.072 SIDE CHAIN 18 A ARG 274 0.090 SIDE CHAIN 18 C ARG 232 0.073 SIDE CHAIN 1 A LYS 229 -97.71 -60.01 1 A GLU 235 62.34 88.88 1 A HIS 251 -93.81 -63.53 1 A ILE 254 70.85 82.78 1 A ARG 255 63.92 179.06 1 A GLN 259 -155.19 39.33 1 A GLU 265 -87.14 -79.11 1 A HIS 290 -120.01 -168.61 1 A HIS 294 77.47 133.67 1 B LYS 218 81.53 87.15 1 B ALA 221 -98.53 -159.93 1 B GLU 235 64.37 97.93 1 B SER 257 -141.79 21.39 1 B GLU 265 -92.80 -86.42 1 B HIS 290 -161.25 112.71 1 B HIS 291 -129.69 -168.91 1 C ALA 221 78.84 132.29 1 C GLU 235 63.13 93.43 1 C HIS 251 -108.93 -69.24 1 C ARG 255 154.94 108.91 1 C GLU 265 -91.11 -88.49 1 C LYS 284 -146.88 -7.30 2 A GLU 235 67.07 -87.23 2 A LEU 250 81.04 114.53 2 A ARG 255 -105.53 -83.92 2 A GLN 259 72.19 -49.79 2 A GLU 265 -78.58 -72.18 2 A ASP 288 70.73 132.18 2 B ILE 219 -123.19 -65.63 2 B ALA 221 -175.32 -169.99 2 B LYS 229 -100.69 -64.10 2 B GLU 235 75.87 -74.16 2 B ARG 236 -140.26 24.72 2 B LEU 250 65.53 -79.97 2 B ILE 254 -168.93 -156.05 2 B ILE 256 -127.01 -56.54 2 B SER 257 -169.06 -61.28 2 B GLU 265 -86.01 -76.21 2 B ASP 288 56.18 101.00 2 B HIS 290 -153.59 30.35 2 C ILE 219 89.75 97.87 2 C ALA 221 -162.85 -45.90 2 C LYS 229 -93.38 -64.22 2 C GLU 235 74.42 -73.05 2 C HIS 251 -144.18 -51.41 2 C ARG 255 67.74 174.87 2 C SER 257 172.42 -32.69 2 C ASP 258 -34.86 106.67 2 C TRP 287 -79.04 32.36 2 C ASN 289 177.16 -34.49 2 C HIS 294 -143.89 -69.77 3 A ILE 219 53.63 84.37 3 A GLU 235 65.27 -84.55 3 A ARG 236 -140.20 26.14 3 A ARG 255 69.03 -88.61 3 A SER 257 -101.57 -163.80 3 A GLU 265 -77.73 -78.40 3 A GLU 272 -93.35 57.55 3 A LYS 284 -160.07 53.23 3 A ASP 288 -121.65 -62.66 3 A ASN 289 167.47 -177.17 3 A HIS 294 -154.45 -61.88 3 B ALA 221 72.03 35.38 3 B LYS 229 -93.31 -62.30 3 B GLU 235 67.52 -80.41 3 B ARG 236 -141.06 18.30 3 B LEU 250 54.51 89.34 3 B ARG 255 -179.61 -50.19 3 B SER 257 -160.22 113.04 3 B ASP 258 69.48 166.82 3 B GLN 259 -161.24 29.21 3 B GLU 265 -82.47 -78.81 3 B GLU 272 -91.85 52.10 3 B LYS 284 -155.95 36.73 3 B TRP 287 -115.18 71.85 3 B HIS 290 71.26 85.99 3 B HIS 291 -145.60 -51.42 3 C ALA 221 70.14 79.66 3 C GLU 235 68.52 -84.70 3 C ARG 236 -141.25 21.50 3 C LEU 250 72.72 -61.49 3 C GLU 272 -96.79 51.89 3 C LYS 284 -154.46 36.20 3 C HIS 290 68.49 -173.99 3 C HIS 292 -179.50 -36.18 4 A LYS 218 -156.12 -84.79 4 A GLU 235 51.71 97.05 4 A LEU 250 64.71 -172.20 4 A GLU 265 -84.34 -75.85 4 A GLU 272 -176.76 102.98 4 A LYS 284 -174.78 30.87 4 A PHE 286 73.86 -51.69 4 A ASP 288 171.97 155.18 4 A ASN 289 -168.97 66.39 4 B LYS 218 73.43 -74.60 4 B LYS 229 -80.17 -71.23 4 B GLU 235 56.49 98.22 4 B ARG 255 72.69 103.83 4 B GLU 265 -93.00 -75.44 4 B GLU 272 -177.40 105.28 4 B LYS 284 -161.64 35.24 4 B PHE 286 68.78 -71.31 4 B ASP 288 88.27 169.55 4 C ALA 221 -150.28 22.18 4 C LYS 229 -78.46 -71.46 4 C GLU 235 50.65 92.01 4 C LEU 250 47.92 78.46 4 C HIS 251 70.92 -52.30 4 C ARG 255 -133.25 -37.26 4 C GLU 265 -79.76 -81.49 4 C GLU 272 -173.18 130.79 4 C LYS 284 -164.20 21.65 4 C PHE 286 67.43 -79.37 4 C TRP 287 -93.51 -69.93 4 C ASP 288 -175.54 -168.86 4 C ASN 289 177.16 -58.73 4 C HIS 291 66.45 104.78 4 C HIS 293 60.53 105.41 5 A GLU 235 73.38 -79.00 5 A LEU 250 65.34 -170.48 5 A ARG 255 -155.32 -34.94 5 A SER 257 55.97 -157.80 5 A GLN 259 -135.46 -51.67 5 A GLU 265 -79.10 -70.64 5 A GLU 272 -99.24 53.22 5 A HIS 291 79.87 85.52 5 B GLU 235 70.13 -95.19 5 B LEU 250 64.76 -72.49 5 B ILE 254 -139.78 -66.79 5 B ARG 255 -147.84 -157.23 5 B GLN 259 -152.21 28.66 5 B GLU 272 -96.14 48.28 5 B HIS 290 -173.73 -54.54 5 B HIS 294 -101.25 72.56 5 C LYS 218 68.56 130.95 5 C GLU 235 64.58 -99.02 5 C HIS 251 -167.81 -39.80 5 C ARG 255 -148.76 -73.66 5 C ILE 256 -135.83 -66.35 5 C SER 257 166.90 -160.11 5 C LYS 284 -151.46 6.23 5 C ASN 289 -152.25 56.45 6 A LYS 218 -106.61 -70.96 6 A ALA 221 -64.24 92.62 6 A GLU 235 59.87 105.01 6 A LEU 250 74.53 176.68 6 A ASP 258 -95.13 -158.89 6 A GLU 265 -77.35 -73.19 6 A ASN 289 -171.29 87.66 6 A HIS 291 69.47 144.43 6 A HIS 292 -142.04 -61.67 6 A HIS 293 -145.31 -79.97 6 A HIS 294 -160.36 -51.74 6 B LYS 218 -147.05 -70.95 6 B GLU 235 60.56 93.62 6 B ILE 256 71.84 68.84 6 B GLN 259 -164.54 23.58 6 B ASP 288 -73.55 22.59 6 B HIS 293 -168.04 33.07 6 C ASP 220 -114.38 -167.88 6 C GLU 235 62.81 92.16 6 C LEU 250 76.70 -61.67 6 C ILE 256 77.70 91.10 6 C GLN 259 -164.77 -19.25 6 C LYS 284 -145.68 20.50 6 C HIS 290 -68.44 98.46 6 C HIS 293 -166.26 76.26 6 C HIS 294 56.50 -171.75 7 A LYS 218 -132.70 -42.40 7 A GLU 235 64.18 95.64 7 A LEU 250 72.91 -162.26 7 A HIS 251 69.38 177.81 7 A SER 257 -139.27 -45.06 7 A GLU 265 -92.91 -67.60 7 A PHE 286 52.07 -130.10 7 A ASP 288 51.21 -163.64 7 A HIS 290 75.62 84.79 7 A HIS 291 63.79 82.34 7 B ALA 221 178.57 136.63 7 B LYS 229 -104.51 -67.76 7 B GLU 235 57.99 98.40 7 B LEU 250 75.85 157.80 7 B ARG 255 69.73 135.08 7 B ASP 258 -111.17 -164.63 7 B GLU 265 -89.21 -72.79 7 B PHE 286 63.30 -175.04 7 C GLU 235 56.76 95.70 7 C ARG 255 58.77 -168.08 7 C ILE 256 -151.91 -38.93 7 C GLU 265 -85.35 -74.76 7 C PHE 286 73.87 169.97 7 C ASP 288 -78.11 -78.53 7 C HIS 291 80.32 105.26 7 C HIS 294 -177.61 -179.96 8 A ASP 220 64.31 -169.64 8 A ALA 221 70.79 163.14 8 A GLU 235 65.60 89.14 8 A ARG 236 66.33 -4.82 8 A HIS 251 69.98 86.82 8 A GLU 272 179.60 121.30 8 A HIS 290 -103.68 74.55 8 A HIS 291 -68.57 80.41 8 A HIS 292 169.51 84.92 8 B ASP 220 75.28 -173.99 8 B GLU 235 65.09 94.85 8 B ARG 236 58.60 15.78 8 B ASP 258 -173.27 130.78 8 B GLN 259 -144.03 -97.44 8 B GLU 265 -93.95 -77.94 8 B GLU 272 176.24 114.17 8 B LYS 284 -149.04 19.84 8 B HIS 293 -94.65 -86.38 8 C ALA 221 60.79 88.47 8 C GLU 235 59.72 97.76 8 C LEU 250 69.82 110.48 8 C ILE 256 69.25 -51.63 8 C SER 257 69.22 -73.28 8 C GLU 265 -72.49 -75.68 8 C GLU 272 71.48 102.85 8 C LYS 284 -151.93 -62.09 8 C ASN 289 -156.28 -152.65 8 C HIS 291 -58.53 -82.85 8 C HIS 292 60.15 97.91 8 C HIS 294 75.50 149.31 9 A LYS 229 -92.75 -60.91 9 A GLU 235 66.11 96.88 9 A LEU 250 68.43 -80.75 9 A ILE 254 -167.52 -53.09 9 A ARG 255 -165.67 102.36 9 A ILE 256 78.11 137.25 9 A LYS 284 82.09 19.40 9 A ASP 288 -146.01 -71.67 9 A HIS 290 -147.01 -38.50 9 A HIS 291 -60.49 21.28 9 A HIS 292 -153.41 -52.98 9 A HIS 293 -171.13 128.05 9 B GLU 235 67.50 96.71 9 B LYS 284 90.95 -59.45 9 B ASP 288 169.87 -78.34 9 B HIS 293 72.26 -63.26 9 B HIS 294 55.49 100.18 9 C ASP 220 -93.04 -65.87 9 C GLU 235 64.43 101.29 9 C ARG 236 59.60 13.88 9 C LEU 250 69.39 -163.96 9 C HIS 251 -152.65 -54.65 9 C SER 257 65.82 146.08 9 C GLN 259 76.12 -24.19 9 C GLU 265 -81.13 -88.50 9 C LYS 284 75.07 -57.78 9 C ASP 288 -131.11 -36.27 9 C HIS 290 163.90 116.70 10 A LYS 218 -164.01 77.12 10 A ASP 220 -151.97 -36.08 10 A GLU 235 64.90 -85.57 10 A LEU 250 67.07 73.61 10 A ASP 258 70.45 120.55 10 A GLU 265 -85.38 -79.09 10 A PHE 286 -73.10 33.78 10 A ASP 288 -113.57 -97.26 10 A HIS 290 -100.47 56.58 10 B LYS 218 -144.66 49.45 10 B LYS 229 -121.67 -54.63 10 B GLU 235 77.82 -79.19 10 B ARG 236 -140.57 27.10 10 B LEU 250 165.80 161.34 10 B ARG 255 -159.97 -46.27 10 B ILE 256 62.76 81.70 10 B GLU 265 -91.94 -78.34 10 B PHE 286 -72.73 40.54 10 B HIS 291 -88.06 44.96 10 C GLU 235 73.93 -74.02 10 C HIS 251 -168.28 98.05 10 C ARG 255 66.89 87.57 10 C GLU 265 -90.03 -76.04 10 C PHE 286 -76.22 41.64 10 C ASP 288 -77.36 24.41 10 C HIS 292 -109.36 -61.91 11 A LYS 218 64.30 -92.89 11 A GLU 235 68.79 -100.66 11 A LEU 250 48.34 -95.04 11 A ILE 256 -124.16 -52.29 11 A GLU 265 -85.46 -74.91 11 A GLU 272 -92.50 32.30 11 A LYS 284 -179.85 27.06 11 A PHE 286 62.53 -89.07 11 A TRP 287 -166.89 15.84 11 B LYS 218 75.51 -72.26 11 B ILE 219 -167.63 13.50 11 B LYS 229 -109.00 -61.72 11 B GLU 235 74.76 -102.37 11 B LEU 250 68.23 165.05 11 B SER 257 -58.01 98.30 11 B ASP 258 37.54 85.30 11 B GLU 265 -96.20 -76.35 11 B GLU 272 -77.22 40.43 11 B LYS 284 174.05 27.77 11 B PHE 286 60.61 -83.53 11 B TRP 287 -162.63 48.86 11 B ASP 288 67.20 -166.38 11 B HIS 291 -100.18 -75.64 11 C ALA 221 68.77 -72.21 11 C LYS 229 -100.86 -64.65 11 C GLU 235 78.75 -90.01 11 C LEU 250 49.40 28.17 11 C GLN 259 72.37 -65.96 11 C GLU 265 -97.56 -79.87 11 C GLU 272 -91.37 52.83 11 C LYS 284 -170.71 28.75 11 C PHE 286 65.91 -78.67 11 C TRP 287 -157.34 23.24 11 C ASP 288 61.57 -150.60 11 C ASN 289 68.41 149.82 11 C HIS 290 69.08 148.70 12 A GLU 235 63.30 72.20 12 A LEU 250 60.85 99.80 12 A ARG 255 51.30 94.78 12 A LYS 284 -176.91 -5.33 12 A ASP 288 62.60 92.94 12 B GLU 235 59.82 93.62 12 B LYS 284 -174.90 -18.14 12 B HIS 290 -115.32 -73.76 12 B HIS 292 68.72 -74.02 12 B HIS 293 -156.55 -54.28 12 C ALA 221 73.53 146.37 12 C GLU 235 59.07 93.05 12 C ASP 288 -165.88 -167.55 12 C ASN 289 72.78 105.94 12 C HIS 290 75.79 -57.85 12 C HIS 291 50.61 -73.32 13 A GLU 235 63.82 -85.77 13 A LEU 250 76.61 -62.17 13 A ILE 256 66.51 84.53 13 A GLU 265 -83.60 -82.61 13 A LYS 284 80.24 45.25 13 A ASN 289 71.05 173.49 13 A HIS 291 -140.83 -68.48 13 A HIS 292 79.47 93.19 13 A HIS 293 76.74 140.05 13 A HIS 294 -157.81 81.48 13 B ILE 219 -134.25 -70.57 13 B LYS 229 -96.74 -61.32 13 B GLU 235 63.09 -89.09 13 B GLU 265 -93.50 -69.27 13 B LYS 284 78.01 -50.88 13 B HIS 291 -69.67 80.27 13 C LYS 218 56.18 81.36 13 C ALA 221 61.39 -154.50 13 C GLU 235 69.80 -77.81 13 C ARG 236 -142.10 56.80 13 C GLU 265 -90.44 -84.66 13 C HIS 290 -62.86 99.04 13 C HIS 291 -138.13 -49.66 14 A GLU 235 63.49 86.68 14 A LEU 250 54.30 -98.27 14 A HIS 251 -145.34 29.62 14 A SER 257 -98.83 36.17 14 A LYS 284 -178.67 -35.95 14 A PHE 286 -104.25 -169.66 14 A TRP 287 -53.02 104.20 14 A HIS 290 58.46 75.43 14 A HIS 294 -171.66 17.72 14 B ASP 220 57.23 -92.73 14 B ALA 221 -180.00 -36.89 14 B GLU 235 60.89 97.66 14 B LEU 250 65.68 -69.05 14 B ILE 254 -138.80 -45.66 14 B ARG 255 -159.96 62.40 14 B SER 257 -65.90 98.41 14 B LYS 284 173.92 -42.06 14 B PHE 286 -83.40 -153.63 14 B TRP 287 -64.66 43.50 14 B HIS 290 62.99 80.42 14 B HIS 292 59.46 -88.90 14 C GLU 235 64.49 89.59 14 C LEU 250 64.53 -178.92 14 C ILE 254 72.04 148.17 14 C SER 257 68.91 130.53 14 C LYS 284 170.43 -34.11 14 C ASP 288 75.01 -81.35 14 C HIS 293 -162.09 -69.89 15 A LYS 218 -130.76 -65.38 15 A ILE 219 68.84 104.16 15 A ASP 220 66.97 -156.70 15 A GLU 235 63.46 83.44 15 A LEU 250 69.26 -94.22 15 A HIS 251 171.33 139.04 15 A ILE 256 -156.27 -36.86 15 A LYS 284 176.82 66.38 15 A HIS 293 -146.61 -42.20 15 B LYS 218 75.00 124.45 15 B ILE 219 -129.69 -74.85 15 B ASP 220 66.88 -173.71 15 B GLU 235 61.38 80.38 15 B LEU 250 -65.19 91.83 15 B HIS 251 -161.75 -38.81 15 B SER 257 -178.14 -169.11 15 B ASP 258 -93.11 -159.66 15 B LYS 284 -145.75 19.92 15 B HIS 290 -104.55 -160.78 15 B HIS 293 -143.95 35.70 15 C LYS 229 -90.83 -62.00 15 C GLU 235 65.52 84.26 15 C LEU 250 64.52 -65.89 15 C ASP 258 -133.70 -52.10 15 C LYS 284 -148.53 13.89 15 C HIS 291 71.06 -22.75 15 C HIS 292 81.88 99.21 16 A ASP 220 -121.44 -165.66 16 A GLU 235 59.27 91.24 16 A LEU 250 72.26 -35.29 16 A HIS 251 79.78 113.69 16 A ILE 254 -175.49 -48.71 16 A GLU 272 -176.96 125.86 16 A ASP 288 -73.75 -72.45 16 A ASN 289 103.33 80.43 16 A HIS 290 71.41 148.04 16 A HIS 291 -166.80 33.46 16 B ASP 220 -173.95 -56.38 16 B ALA 221 68.18 164.38 16 B GLU 235 55.16 84.49 16 B LEU 250 73.34 -37.25 16 B ILE 254 -147.43 -61.98 16 B ARG 255 177.44 81.90 16 B ILE 256 73.32 89.05 16 B SER 257 -54.43 -73.71 16 B GLN 259 -114.03 78.56 16 B GLU 272 -178.99 126.72 16 B HIS 293 -163.26 96.95 16 C ALA 221 67.91 164.23 16 C GLU 235 61.31 85.41 16 C ARG 236 59.18 5.17 16 C ILE 256 -61.59 99.29 16 C GLU 265 -78.79 -77.17 16 C GLU 272 179.89 118.94 16 C LYS 284 -141.92 17.39 16 C HIS 290 -117.39 -70.12 16 C HIS 291 -178.81 137.82 16 C HIS 293 -80.16 -92.10 17 A ILE 219 -104.35 -64.48 17 A ASP 220 55.30 82.65 17 A GLU 235 71.42 -88.09 17 A GLU 265 -84.66 -75.68 17 A GLU 272 -92.39 35.48 17 A ASN 289 173.09 176.33 17 A HIS 292 -69.85 80.52 17 B ALA 221 65.71 -178.78 17 B LYS 229 -84.28 -70.77 17 B GLU 235 71.88 -83.64 17 B GLN 259 -146.61 -63.96 17 B GLU 265 -90.48 -71.71 17 B GLU 272 -85.31 48.14 17 B HIS 293 57.39 103.86 17 C ASP 220 -99.88 -61.26 17 C ALA 221 65.55 -71.63 17 C GLU 235 72.26 -86.54 17 C ILE 254 43.77 81.69 17 C GLU 272 -85.94 49.35 18 A LYS 218 70.12 140.44 18 A GLU 235 60.14 72.96 18 A LEU 250 58.88 -151.39 18 A ARG 255 65.31 -86.75 18 A LYS 284 71.57 -38.28 18 A PHE 286 53.33 -78.77 18 A ASN 289 -176.79 -67.23 18 A HIS 290 167.85 -43.22 18 A HIS 293 -154.49 -27.56 18 B ILE 219 -178.84 108.71 18 B ALA 221 -156.68 47.16 18 B GLU 235 60.69 91.39 18 B ILE 254 69.85 92.56 18 B ILE 256 59.97 79.42 18 B SER 257 -163.07 115.60 18 B GLN 259 -149.32 18.53 18 B LYS 284 70.87 -66.37 18 B ASP 288 -150.07 -59.43 18 B ASN 289 38.02 79.95 18 B HIS 291 61.71 73.67 18 C ALA 221 -164.46 -100.22 18 C GLU 235 62.91 85.74 18 C ARG 255 56.92 78.71 18 C LYS 284 78.47 -40.65 18 C PHE 286 -79.97 -85.84 18 C ASP 288 179.62 145.26 18 C HIS 291 69.20 -61.36 19 A ILE 219 60.51 71.17 19 A GLU 235 66.99 -88.13 19 A LEU 250 57.86 71.54 19 A ARG 255 67.81 -178.04 19 A GLU 272 -92.79 53.65 19 A LYS 284 -141.04 -56.37 19 A HIS 292 -94.41 -82.18 19 B GLU 235 66.68 -86.85 19 B LEU 250 78.92 86.76 19 B GLN 259 -100.99 40.56 19 B LYS 284 -142.56 -62.27 19 B ASP 288 -118.65 79.74 19 B ASN 289 -49.47 -76.21 19 B HIS 292 -68.14 86.27 19 C LYS 218 77.90 -30.71 19 C ASP 220 -68.05 -73.19 19 C ALA 221 65.09 -71.92 19 C LYS 229 -80.14 -76.34 19 C GLU 235 63.43 -82.02 19 C LEU 250 54.44 -86.45 19 C HIS 251 67.96 -54.85 19 C ILE 256 176.90 145.40 19 C ASP 258 168.17 161.74 19 C GLN 259 -88.18 39.72 19 C GLU 272 -79.35 47.39 19 C LYS 284 -131.92 -54.78 20 A ILE 219 -107.15 74.11 20 A GLU 235 66.68 106.53 20 A HIS 251 69.19 119.41 20 A ARG 255 -146.46 -156.73 20 A SER 257 -93.70 -68.59 20 A ASP 258 59.67 170.61 20 A GLN 259 167.31 -21.51 20 A GLU 265 -96.91 -75.86 20 A GLU 272 58.37 77.01 20 A HIS 290 173.37 111.34 20 B GLU 235 62.59 91.32 20 B ILE 254 -164.15 -41.16 20 B ARG 255 -167.25 113.05 20 B ILE 256 -137.58 -54.96 20 B GLU 272 65.11 89.18 20 B HIS 292 -75.30 -73.89 20 B HIS 294 -95.65 -81.78 20 C LYS 218 -147.50 -56.82 20 C GLU 235 57.81 106.18 20 C LEU 250 47.98 75.72 20 C GLU 265 -83.49 -80.21 20 C GLU 272 63.03 82.38 20 C TRP 287 -68.45 89.30 20 C ASN 289 -105.45 -86.59 20 C HIS 290 67.20 132.13 20 C HIS 292 -169.94 117.37 20 C HIS 294 -172.23 -6.81 Small s protein lowest energy, model 1 High-resolution structure of the HET-s(218-289) prion in its amyloid form obtained by solid-state NMR 1 N N 1 N N 1 N N THE RIGID PARTS (I222-A249, T260-W287) OF MOLECULES B AND C CAN BE OBTAINED BY TRANSLATION AND TWIST OF THE RIGID PART OF MOLECULE A. PROTEIN FIBRIL HET-s(218-289), BETA-SOLENOID, PRION, AMYLOID FIBRIL, PARALLEL BETA-SHEETS, HYDROPHOBIC CORE, SALT BRIDGES, ASPARAGINE LADDERS, BETA-HELIX, PROTEIN FIBRIL Q03689_PODAN UNP 1 218 Q03689 KIDAIVGRNSAKDIRTEERARVQLGNVVTAAALHGGIRISDQTTNSVETVVGKGESRVLIGNEYGGKGFWDN 218 289 2KJ3 218 289 Q03689 A 1 2 73 218 289 2KJ3 218 289 Q03689 B 1 2 73 218 289 2KJ3 218 289 Q03689 C 1 2 73 1 INITIATING METHIONINE MET 217 2KJ3 A Q03689 UNP 1 1 EXPRESSION TAG HIS 290 2KJ3 A Q03689 UNP 74 1 EXPRESSION TAG HIS 291 2KJ3 A Q03689 UNP 75 1 EXPRESSION TAG HIS 292 2KJ3 A Q03689 UNP 76 1 EXPRESSION TAG HIS 293 2KJ3 A Q03689 UNP 77 1 EXPRESSION TAG HIS 294 2KJ3 A Q03689 UNP 78 1 EXPRESSION TAG HIS 295 2KJ3 A Q03689 UNP 79 2 INITIATING METHIONINE MET 217 2KJ3 B Q03689 UNP 1 2 EXPRESSION TAG HIS 290 2KJ3 B Q03689 UNP 74 2 EXPRESSION TAG HIS 291 2KJ3 B Q03689 UNP 75 2 EXPRESSION TAG HIS 292 2KJ3 B Q03689 UNP 76 2 EXPRESSION TAG HIS 293 2KJ3 B Q03689 UNP 77 2 EXPRESSION TAG HIS 294 2KJ3 B Q03689 UNP 78 2 EXPRESSION TAG HIS 295 2KJ3 B Q03689 UNP 79 3 INITIATING METHIONINE MET 217 2KJ3 C Q03689 UNP 1 3 EXPRESSION TAG HIS 290 2KJ3 C Q03689 UNP 74 3 EXPRESSION TAG HIS 291 2KJ3 C Q03689 UNP 75 3 EXPRESSION TAG HIS 292 2KJ3 C Q03689 UNP 76 3 EXPRESSION TAG HIS 293 2KJ3 C Q03689 UNP 77 3 EXPRESSION TAG HIS 294 2KJ3 C Q03689 UNP 78 3 EXPRESSION TAG HIS 295 2KJ3 C Q03689 UNP 79 6 6 parallel parallel parallel parallel parallel parallel parallel parallel parallel parallel A ASN 226 A ASN 10 A GLU 234 A GLU 18 A THR 261 A THR 45 A LYS 270 A LYS 54 B ARG 225 B ARG 9 B GLU 234 B GLU 18 B THR 261 B THR 45 B LYS 270 B LYS 54 C ARG 225 C ARG 9 C GLU 234 C GLU 18 C ASN 262 C ASN 46 C LYS 270 C LYS 54 A ARG 238 A ARG 22 A VAL 245 A VAL 29 A ARG 274 A ARG 58 A TYR 281 A TYR 65 B ARG 238 B ARG 22 B VAL 245 B VAL 29 B ARG 274 B ARG 58 B TYR 281 B TYR 65 C ARG 238 C ARG 22 C VAL 245 C VAL 29 C ARG 274 C ARG 58 C TYR 281 C TYR 65