1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Knowles, T.J. Sridhar, P. Rajesh, S. Manoli, E. Henderson, I.R. Overduin, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Embo Rep. 1469-221X 12 123 128 10.1038/embor.2010.202 21212804 Structure and function of BamE within the outer membrane and the beta-barrel assembly machine. 2011 10.2210/pdb2km7/pdb pdb_00002km7 11446.642 Small protein A C20S 1 syn polymer no no SSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSG VLTNIDNKPALSGNLEHHHHHH SSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSG VLTNIDNKPALSGNLEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Complete solution structure of E. coli BamE (also known as SmpA) database_2 struct_ref_seq_dif repository Initial release Version format compliance Database references Database references 1 0 2011-02-02 1 1 2011-07-13 1 2 2013-06-19 1 3 2021-10-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details HELIX DETERMINATION METHOD: AUTHOR BMRB Y RCSB 2009-07-24 REL REL 83333 Escherichia coli sample structures with the lowest energy 150 20 3D Best HNCA 3D Best HN(CO)CA 3D Best CBCA(CO)NH 3D Best HNCACB 3D Best HNCO 3D Best HN(CA)CO 2D Best 1H-15N HSQC 3D HCCH-TOCSY 3D CCH-TOCSY 3D 1H-15N NOESY 3D 1H-13C NOESY 2.0 mM [U-100% 13C; U-100% 15N] 50 mM 50 mM 7 ambient 303 K CYANA, ARIA torsion angle dynamics, simulated annealing 1 closest to the average 2.0 mM [U-100% 13C; U-100% 15N] BamE, 50 mM sodium phosphate, 50 mM sodium chloride, 90% H2O/10% D2O 90% H2O/10% D2O Guntert, Mumenthaler and Wuthrich peak picking CYANA 1.0.5 Guntert, Mumenthaler and Wuthrich structure solution CYANA 1.0.5 Guntert, Mumenthaler and Wuthrich refinement CYANA 1.0.5 800 Varian INOVA Varian INOVA 900 Varian INOVA Varian INOVA SER 20 n 1 SER 20 A SER 21 n 2 SER 21 A THR 22 n 3 THR 22 A LEU 23 n 4 LEU 23 A GLU 24 n 5 GLU 24 A ARG 25 n 6 ARG 25 A VAL 26 n 7 VAL 26 A VAL 27 n 8 VAL 27 A TYR 28 n 9 TYR 28 A ARG 29 n 10 ARG 29 A PRO 30 n 11 PRO 30 A ASP 31 n 12 ASP 31 A ILE 32 n 13 ILE 32 A ASN 33 n 14 ASN 33 A GLN 34 n 15 GLN 34 A GLY 35 n 16 GLY 35 A ASN 36 n 17 ASN 36 A TYR 37 n 18 TYR 37 A LEU 38 n 19 LEU 38 A THR 39 n 20 THR 39 A ALA 40 n 21 ALA 40 A ASN 41 n 22 ASN 41 A ASP 42 n 23 ASP 42 A VAL 43 n 24 VAL 43 A SER 44 n 25 SER 44 A LYS 45 n 26 LYS 45 A ILE 46 n 27 ILE 46 A ARG 47 n 28 ARG 47 A VAL 48 n 29 VAL 48 A GLY 49 n 30 GLY 49 A MET 50 n 31 MET 50 A THR 51 n 32 THR 51 A GLN 52 n 33 GLN 52 A GLN 53 n 34 GLN 53 A GLN 54 n 35 GLN 54 A VAL 55 n 36 VAL 55 A ALA 56 n 37 ALA 56 A TYR 57 n 38 TYR 57 A ALA 58 n 39 ALA 58 A LEU 59 n 40 LEU 59 A GLY 60 n 41 GLY 60 A THR 61 n 42 THR 61 A PRO 62 n 43 PRO 62 A LEU 63 n 44 LEU 63 A MET 64 n 45 MET 64 A SER 65 n 46 SER 65 A ASP 66 n 47 ASP 66 A PRO 67 n 48 PRO 67 A PHE 68 n 49 PHE 68 A GLY 69 n 50 GLY 69 A THR 70 n 51 THR 70 A ASN 71 n 52 ASN 71 A THR 72 n 53 THR 72 A TRP 73 n 54 TRP 73 A PHE 74 n 55 PHE 74 A TYR 75 n 56 TYR 75 A VAL 76 n 57 VAL 76 A PHE 77 n 58 PHE 77 A ARG 78 n 59 ARG 78 A GLN 79 n 60 GLN 79 A GLN 80 n 61 GLN 80 A PRO 81 n 62 PRO 81 A GLY 82 n 63 GLY 82 A HIS 83 n 64 HIS 83 A GLU 84 n 65 GLU 84 A GLY 85 n 66 GLY 85 A VAL 86 n 67 VAL 86 A THR 87 n 68 THR 87 A GLN 88 n 69 GLN 88 A GLN 89 n 70 GLN 89 A THR 90 n 71 THR 90 A LEU 91 n 72 LEU 91 A THR 92 n 73 THR 92 A LEU 93 n 74 LEU 93 A THR 94 n 75 THR 94 A PHE 95 n 76 PHE 95 A ASN 96 n 77 ASN 96 A SER 97 n 78 SER 97 A SER 98 n 79 SER 98 A GLY 99 n 80 GLY 99 A VAL 100 n 81 VAL 100 A LEU 101 n 82 LEU 101 A THR 102 n 83 THR 102 A ASN 103 n 84 ASN 103 A ILE 104 n 85 ILE 104 A ASP 105 n 86 ASP 105 A ASN 106 n 87 ASN 106 A LYS 107 n 88 LYS 107 A PRO 108 n 89 PRO 108 A ALA 109 n 90 ALA 109 A LEU 110 n 91 LEU 110 A SER 111 n 92 SER 111 A GLY 112 n 93 GLY 112 A ASN 113 n 94 ASN 113 A LEU 114 n 95 LEU 114 A GLU 115 n 96 GLU 115 A HIS 116 n 97 HIS 116 A HIS 117 n 98 HIS 117 A HIS 118 n 99 HIS 118 A HIS 119 n 100 HIS 119 A HIS 120 n 101 HIS 120 A HIS 121 n 102 HIS 121 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TRP 73 A N TRP 54 A O LEU 93 A O LEU 74 A N THR 92 A N THR 73 A O ASP 105 A O ASP 86 1 A A HB2 HB2 LYS ASN 107 113 1.26 1 A A OE1 HD1 GLU HIS 84 117 1.59 2 A A HA2 HG13 GLY VAL 49 100 1.31 2 A A OD1 HZ1 ASP LYS 105 107 1.58 3 A A OD2 HZ1 ASP LYS 42 45 1.56 4 A A HB3 H GLN GLN 79 80 1.29 4 A A HB3 H LEU SER 110 111 1.32 4 A A OD1 HZ2 ASP LYS 42 45 1.58 7 A A HA2 HG12 GLY VAL 49 100 1.32 7 A A OD1 HZ3 ASP LYS 42 45 1.56 11 A A HB H ILE ASN 32 33 1.26 11 A A HB3 H GLN GLN 79 80 1.28 11 A A OD1 HZ1 ASP LYS 105 107 1.58 12 A A OD1 HZ1 ASP LYS 42 45 1.59 13 A A OE1 HD1 GLU HIS 84 116 1.59 15 A A OD2 HZ3 ASP LYS 105 107 1.59 16 A A OD1 HZ1 ASP LYS 42 45 1.59 17 A A OD1 HZ1 ASP LYS 42 45 1.60 18 A A H HB2 GLY LEU 49 101 1.28 19 A A HA2 HG12 GLY VAL 49 100 1.34 20 A A HD1 OE1 HIS GLU 83 84 1.57 1 A PRO 30 -77.52 45.36 1 A GLN 34 -106.93 67.50 1 A ASN 36 67.98 -79.11 1 A ASN 71 -101.25 49.55 1 A GLN 79 -150.60 -30.74 1 A HIS 83 -175.20 -41.14 1 A LEU 101 -55.14 105.48 1 A ALA 109 -83.08 42.79 1 A SER 111 68.95 96.30 1 A HIS 118 68.34 122.56 2 A LEU 23 -155.04 28.55 2 A ARG 25 -169.95 74.89 2 A ASP 31 -159.47 -133.15 2 A ILE 32 75.56 134.85 2 A ASN 71 -92.41 45.77 2 A HIS 83 71.37 -65.72 2 A THR 87 -162.81 115.31 2 A ALA 109 -68.38 67.70 2 A ASN 113 -135.51 -60.75 2 A HIS 116 39.16 51.91 3 A ASP 31 -88.18 39.06 3 A ASN 33 -85.64 48.41 3 A ASN 36 69.11 -79.65 3 A ASN 71 -106.13 50.58 3 A GLN 80 55.01 74.29 3 A GLU 84 76.60 -45.64 3 A THR 87 -175.53 138.84 3 A ASN 113 71.57 -64.42 3 A GLU 115 69.78 160.30 3 A HIS 118 -156.52 -57.34 3 A HIS 119 175.57 171.24 3 A HIS 120 -72.73 -80.35 4 A ARG 25 -103.68 79.55 4 A PRO 30 -70.56 35.88 4 A ILE 32 72.11 96.53 4 A ASN 71 -97.14 55.10 4 A GLN 79 -105.61 -114.82 4 A GLU 84 69.38 108.17 4 A LEU 110 -152.26 -120.34 4 A SER 111 66.75 -66.80 4 A LEU 114 -129.18 -65.76 4 A HIS 120 -149.18 -70.90 5 A PRO 30 -74.10 43.48 5 A ASN 36 59.86 -133.43 5 A GLN 79 -150.83 11.18 5 A PRO 81 -76.39 -165.41 5 A HIS 83 -72.99 -75.25 5 A LEU 101 -54.66 101.87 5 A ALA 109 -6.43 77.11 5 A LEU 110 174.93 59.69 5 A SER 111 -88.23 45.01 5 A LEU 114 -160.90 -72.46 5 A HIS 116 -144.11 59.40 6 A ARG 25 -153.24 -12.26 6 A PRO 30 -67.86 60.98 6 A ILE 32 56.73 80.08 6 A GLN 34 72.45 -72.14 6 A SER 65 -106.87 62.12 6 A GLN 79 -158.24 41.91 6 A GLU 84 72.34 -52.62 6 A THR 87 -171.44 101.43 6 A LEU 101 -54.77 102.71 6 A HIS 116 -80.52 47.81 6 A HIS 118 55.67 85.75 7 A VAL 27 47.20 72.56 7 A GLU 84 74.41 -17.37 7 A LEU 101 -55.72 103.06 7 A ALA 109 -64.70 92.31 7 A SER 111 73.88 148.57 7 A HIS 117 -170.52 -58.80 7 A HIS 118 -155.18 59.29 8 A ASP 31 -97.82 37.48 8 A ILE 32 -141.49 -66.54 8 A ASN 33 -162.37 -70.91 8 A HIS 83 -168.71 -99.50 8 A LEU 101 -55.42 107.27 8 A LEU 114 -122.07 -134.86 8 A HIS 116 61.84 -131.50 8 A HIS 117 -147.44 18.80 8 A HIS 118 -163.52 103.96 9 A LEU 23 -109.16 -94.48 9 A GLU 24 -102.72 69.42 9 A VAL 26 79.28 108.92 9 A ASN 36 -89.18 46.75 9 A ASP 66 -160.26 94.79 9 A LEU 101 -55.34 103.35 9 A ASN 113 -159.09 83.54 9 A LEU 114 73.28 -73.75 9 A GLU 115 179.48 170.78 9 A HIS 119 61.19 -89.15 9 A HIS 120 -147.78 47.04 10 A SER 21 64.09 179.29 10 A PRO 30 -55.35 99.30 10 A ASN 33 69.62 -67.06 10 A GLN 79 -129.20 -138.87 10 A GLU 84 73.11 134.66 10 A LEU 110 -79.61 41.97 10 A SER 111 -165.30 -60.76 10 A LEU 114 -166.20 26.30 10 A GLU 115 -86.87 -112.74 10 A HIS 116 71.70 -51.04 10 A HIS 117 177.48 93.94 10 A HIS 119 -118.47 55.75 11 A SER 21 57.74 74.04 11 A ASP 31 -95.05 -159.98 11 A ILE 32 37.67 -117.18 11 A ASN 33 -167.97 -57.90 11 A GLN 34 61.23 -148.16 11 A ASN 36 -84.36 -109.49 11 A ASN 71 -108.39 53.89 11 A GLN 79 -91.85 -128.90 11 A GLU 84 76.01 -60.01 11 A THR 87 -165.67 112.85 11 A GLN 88 -163.54 117.49 11 A SER 97 -59.48 -8.45 11 A LEU 101 -56.76 108.42 11 A ASN 113 72.64 -71.31 11 A LEU 114 156.64 -40.19 12 A SER 21 -143.17 33.50 12 A ASN 71 -97.36 52.94 12 A GLN 79 -107.94 -130.15 12 A PRO 81 -75.61 -161.86 12 A GLU 84 81.36 -19.83 12 A THR 87 -167.66 119.37 12 A LEU 101 -54.88 101.85 12 A SER 111 68.26 -56.95 12 A HIS 116 66.52 179.46 12 A HIS 117 -66.31 91.87 13 A GLN 34 -148.18 13.60 13 A ASN 36 179.89 -179.26 13 A ASN 71 -92.13 36.14 13 A PRO 81 -68.03 68.44 13 A HIS 83 57.43 -100.70 13 A GLN 88 -170.19 -178.43 13 A LEU 101 -53.96 107.38 13 A ALA 109 -60.08 92.64 13 A LEU 110 177.21 -47.13 13 A ASN 113 -177.04 -33.22 13 A GLU 115 18.02 77.83 13 A HIS 116 68.80 -80.28 13 A HIS 119 -96.68 -153.95 13 A HIS 120 -121.22 -155.47 14 A SER 21 -140.06 48.59 14 A ILE 32 76.92 138.06 14 A ASN 36 71.25 -94.22 14 A TYR 37 -173.79 -169.35 14 A ASN 71 -90.88 43.24 14 A GLN 79 -120.39 -92.50 14 A PRO 81 -71.97 -95.43 14 A LEU 101 -58.96 96.48 14 A ASN 113 -64.94 -84.07 14 A LEU 114 -175.63 123.21 14 A HIS 116 70.01 -54.80 14 A HIS 120 63.27 -175.14 15 A LEU 23 -142.97 46.50 15 A PRO 30 -72.58 43.36 15 A ASN 36 71.45 -86.64 15 A THR 87 -161.32 98.37 15 A ASN 113 71.32 -49.46 15 A LEU 114 -168.71 -74.13 15 A HIS 117 -169.33 99.06 15 A HIS 118 -166.56 -42.63 15 A HIS 119 74.79 74.03 16 A ARG 25 -152.28 -96.88 16 A ILE 32 -136.57 -158.69 16 A ASN 33 -81.44 47.58 16 A ASN 36 -127.70 -59.53 16 A TYR 37 -123.78 -169.47 16 A ASP 66 -151.75 46.13 16 A PRO 81 -85.40 -104.02 16 A GLU 84 -159.23 -63.06 16 A LEU 101 -54.82 106.21 16 A SER 111 69.92 124.44 16 A HIS 117 75.47 161.13 17 A LEU 23 -85.60 49.66 17 A ARG 25 -174.43 126.41 17 A VAL 27 -146.05 -47.58 17 A PRO 30 -68.54 75.86 17 A ASP 31 -115.32 -133.95 17 A GLN 34 -154.98 -35.30 17 A LEU 101 -55.46 108.23 17 A ALA 109 -60.60 -79.34 17 A LEU 110 55.42 -99.66 17 A LEU 114 -171.97 -56.61 17 A GLU 115 -120.82 -149.84 18 A ARG 25 -168.72 110.38 18 A ASN 33 -98.49 51.15 18 A ILE 46 -81.10 -150.59 18 A GLN 79 -159.10 -44.95 18 A HIS 83 179.24 149.66 18 A GLU 84 72.62 -41.34 18 A THR 87 -164.37 99.96 18 A PRO 108 -58.88 170.26 18 A LEU 114 70.21 144.16 18 A HIS 120 -177.39 -33.51 19 A GLN 80 73.13 147.79 19 A GLN 88 -176.61 112.26 19 A LEU 101 -55.22 107.50 19 A LEU 110 -163.55 82.85 19 A GLU 115 -89.17 -127.25 19 A HIS 116 64.74 -82.45 19 A HIS 117 -164.27 111.14 19 A HIS 118 -46.21 109.73 20 A PRO 30 -58.32 98.66 20 A ASP 31 -135.79 -44.90 20 A ASN 71 -99.73 51.71 20 A GLU 84 75.98 -67.44 20 A THR 87 -170.37 131.81 20 A LEU 101 -54.28 97.22 20 A ALA 109 -81.44 38.93 20 A LEU 114 -165.99 -57.34 20 A GLU 115 65.28 112.45 closest to the average, model 2 Solution Structure of BamE, a component of the outer membrane protein assembly machinery in Escherichia coli 1 N N A THR 39 A THR 20 HELX_P A SER 44 A SER 25 1 1 6 A THR 51 A THR 32 HELX_P A GLY 60 A GLY 41 1 2 10 MEMBRANE PROTEIN BamE, SmpA, BAM complex, Omp85, YaeT, Cell membrane, Cell outer membrane, Lipoprotein, Membrane, Palmitate, MEMBRANE PROTEIN SMPA_ECOLI UNP 1 21 P0A937 CSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSG VLTNIDNKPALSGN 21 114 2KM7 20 113 P0A937 A 1 1 94 1 CYS engineered mutation SER 20 2KM7 A P0A937 UNP 21 1 1 expression tag LEU 114 2KM7 A P0A937 UNP 95 1 expression tag GLU 115 2KM7 A P0A937 UNP 96 1 expression tag HIS 116 2KM7 A P0A937 UNP 97 1 expression tag HIS 117 2KM7 A P0A937 UNP 98 1 expression tag HIS 118 2KM7 A P0A937 UNP 99 1 expression tag HIS 119 2KM7 A P0A937 UNP 100 1 expression tag HIS 120 2KM7 A P0A937 UNP 101 1 expression tag HIS 121 2KM7 A P0A937 UNP 102 3 anti-parallel anti-parallel A THR 72 A THR 53 A TYR 75 A TYR 56 A LEU 91 A LEU 72 A ASN 96 A ASN 77 A VAL 100 A VAL 81 A ASP 105 A ASP 86