1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Bhunia, A. Bhattacharjya, S. Ramamoorthy, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 285 3883 3895 10.1074/jbc.M109.065672 19959835 NMR structure of pardaxin, a pore-forming antimicrobial peptide, in lipopolysaccharide Micelles: Mechanism of outer membrane permeabilization 2010 10.2210/pdb2kns/pdb pdb_00002kns 3325.851 Pardaxin P-4 1 syn polymer Pardaxin Pa4, Pardaxin P1a no no GFFALIPKIISSPLFKTLLSAVGSALSSSGGQE GFFALIPKIISSPLFKTLLSAVGSALSSSGGQE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Database references Derived calculations 1 0 2009-12-15 1 1 2011-07-13 1 2 2022-03-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession BMRB Y PDBJ 2009-09-03 REL REL Standard F-moc solid phase peptide synthesis 31087 Red sea moses sole Pardachirus marmoratus sample The structure was determined based on NOE target function 200 20 1 2D 1H-1H trNOESY 2D 1H-1H TOCSY 0.5 mM 4.5 288 K distance geometry 1 lowest energy 0.5mM Pardaxin-1; 90% H2O/10% D2O 90% H2O/10% D2O Guntert, Braun and Wuthrich refinement DYANA 1.5 600 Bruker DRX Bruker DRX GLY 1 n 1 GLY 1 A PHE 2 n 2 PHE 2 A PHE 3 n 3 PHE 3 A ALA 4 n 4 ALA 4 A LEU 5 n 5 LEU 5 A ILE 6 n 6 ILE 6 A PRO 7 n 7 PRO 7 A LYS 8 n 8 LYS 8 A ILE 9 n 9 ILE 9 A ILE 10 n 10 ILE 10 A SER 11 n 11 SER 11 A SER 12 n 12 SER 12 A PRO 13 n 13 PRO 13 A LEU 14 n 14 LEU 14 A PHE 15 n 15 PHE 15 A LYS 16 n 16 LYS 16 A THR 17 n 17 THR 17 A LEU 18 n 18 LEU 18 A LEU 19 n 19 LEU 19 A SER 20 n 20 SER 20 A ALA 21 n 21 ALA 21 A VAL 22 n 22 VAL 22 A GLY 23 n 23 GLY 23 A SER 24 n 24 SER 24 A ALA 25 n 25 ALA 25 A LEU 26 n 26 LEU 26 A SER 27 n 27 SER 27 A SER 28 n 28 SER 28 A SER 29 n 29 SER 29 A GLY 30 n 30 GLY 30 A GLY 31 n 31 GLY 31 A GLN 32 n 32 GLN 32 A GLU 33 n 33 GLU 33 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A SER 12 -88.57 -71.27 1 A PRO 13 -69.72 -173.47 2 A SER 12 -91.70 -73.79 2 A PRO 13 -69.73 -176.17 3 A SER 12 -88.86 -71.62 3 A PRO 13 -69.71 -174.15 4 A SER 12 -88.67 -71.24 4 A PRO 13 -69.81 -173.23 5 A SER 12 -92.41 -72.98 5 A PRO 13 -69.72 -174.98 6 A SER 12 -92.54 -73.23 6 A PRO 13 -69.68 -174.85 7 A SER 12 -91.26 -72.12 7 A PRO 13 -69.82 -173.66 8 A SER 12 -90.64 -72.73 8 A PRO 13 -69.79 -174.79 9 A SER 12 -91.97 -73.33 9 A PRO 13 -69.79 -175.68 10 A SER 12 -88.57 -71.12 10 A PRO 13 -69.75 -173.38 11 A SER 12 -90.61 -72.76 11 A PRO 13 -69.77 -174.84 12 A SER 12 -91.27 -73.28 12 A PRO 13 -69.76 -175.37 13 A SER 12 -90.79 -72.99 13 A PRO 13 -69.77 -175.15 14 A PRO 13 -69.71 -173.00 15 A SER 12 -90.70 -72.74 15 A PRO 13 -69.83 -174.82 16 A SER 12 -88.63 -71.20 16 A PRO 13 -69.81 -173.36 17 A SER 12 -90.96 -72.65 17 A PRO 13 -69.75 -173.82 18 A SER 12 -90.70 -72.80 18 A PRO 13 -69.70 -174.80 19 A SER 12 -88.45 -70.93 19 A PRO 13 -69.84 -174.03 20 A PRO 13 -69.72 -172.63 lowest energy, model 1 Helical Hairpin Structure of Pardaxin in Lipopolysaccharide Micelles: Studied by NMR Spectroscopy 1 N N A ALA 4 A ALA 4 HELX_P A SER 12 A SER 12 1 1 9 A PHE 15 A PHE 15 HELX_P A SER 27 A SER 27 1 2 13 A SER 29 A SER 29 HELX_P A GLU 33 A GLU 33 5 3 5 ANTIMICROBIAL PROTEIN Pardaxin, Pa4, LPS, trNOE, antimicrobial peptide, STD NMR, Ion transport, Porin, Secreted, Toxin, Transmembrane, Transport, ANTIMICROBIAL PROTEIN PAP4_PARMA UNP 1 1 P81861 GFFALIPKIISSPLFKTLLSAVGSALSSSGGQE 1 33 2KNS 1 33 P81861 A 1 1 33