1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Bhunia, A.
Bhattacharjya, S.
Ramamoorthy, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
285
3883
3895
10.1074/jbc.M109.065672
19959835
NMR structure of pardaxin, a pore-forming antimicrobial peptide, in lipopolysaccharide Micelles: Mechanism of outer membrane permeabilization
2010
10.2210/pdb2kns/pdb
pdb_00002kns
3325.851
Pardaxin P-4
1
syn
polymer
Pardaxin Pa4, Pardaxin P1a
no
no
GFFALIPKIISSPLFKTLLSAVGSALSSSGGQE
GFFALIPKIISSPLFKTLLSAVGSALSSSGGQE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Database references
Derived calculations
1
0
2009-12-15
1
1
2011-07-13
1
2
2022-03-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BMRB
Y
PDBJ
2009-09-03
REL
REL
Standard F-moc solid phase peptide synthesis
31087
Red sea moses sole
Pardachirus marmoratus
sample
The structure was determined based on NOE
target function
200
20
1
2D 1H-1H trNOESY
2D 1H-1H TOCSY
0.5
mM
4.5
288
K
distance geometry
1
lowest energy
0.5mM Pardaxin-1; 90% H2O/10% D2O
90% H2O/10% D2O
Guntert, Braun and Wuthrich
refinement
DYANA
1.5
600
Bruker
DRX
Bruker DRX
GLY
1
n
1
GLY
1
A
PHE
2
n
2
PHE
2
A
PHE
3
n
3
PHE
3
A
ALA
4
n
4
ALA
4
A
LEU
5
n
5
LEU
5
A
ILE
6
n
6
ILE
6
A
PRO
7
n
7
PRO
7
A
LYS
8
n
8
LYS
8
A
ILE
9
n
9
ILE
9
A
ILE
10
n
10
ILE
10
A
SER
11
n
11
SER
11
A
SER
12
n
12
SER
12
A
PRO
13
n
13
PRO
13
A
LEU
14
n
14
LEU
14
A
PHE
15
n
15
PHE
15
A
LYS
16
n
16
LYS
16
A
THR
17
n
17
THR
17
A
LEU
18
n
18
LEU
18
A
LEU
19
n
19
LEU
19
A
SER
20
n
20
SER
20
A
ALA
21
n
21
ALA
21
A
VAL
22
n
22
VAL
22
A
GLY
23
n
23
GLY
23
A
SER
24
n
24
SER
24
A
ALA
25
n
25
ALA
25
A
LEU
26
n
26
LEU
26
A
SER
27
n
27
SER
27
A
SER
28
n
28
SER
28
A
SER
29
n
29
SER
29
A
GLY
30
n
30
GLY
30
A
GLY
31
n
31
GLY
31
A
GLN
32
n
32
GLN
32
A
GLU
33
n
33
GLU
33
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
SER
12
-88.57
-71.27
1
A
PRO
13
-69.72
-173.47
2
A
SER
12
-91.70
-73.79
2
A
PRO
13
-69.73
-176.17
3
A
SER
12
-88.86
-71.62
3
A
PRO
13
-69.71
-174.15
4
A
SER
12
-88.67
-71.24
4
A
PRO
13
-69.81
-173.23
5
A
SER
12
-92.41
-72.98
5
A
PRO
13
-69.72
-174.98
6
A
SER
12
-92.54
-73.23
6
A
PRO
13
-69.68
-174.85
7
A
SER
12
-91.26
-72.12
7
A
PRO
13
-69.82
-173.66
8
A
SER
12
-90.64
-72.73
8
A
PRO
13
-69.79
-174.79
9
A
SER
12
-91.97
-73.33
9
A
PRO
13
-69.79
-175.68
10
A
SER
12
-88.57
-71.12
10
A
PRO
13
-69.75
-173.38
11
A
SER
12
-90.61
-72.76
11
A
PRO
13
-69.77
-174.84
12
A
SER
12
-91.27
-73.28
12
A
PRO
13
-69.76
-175.37
13
A
SER
12
-90.79
-72.99
13
A
PRO
13
-69.77
-175.15
14
A
PRO
13
-69.71
-173.00
15
A
SER
12
-90.70
-72.74
15
A
PRO
13
-69.83
-174.82
16
A
SER
12
-88.63
-71.20
16
A
PRO
13
-69.81
-173.36
17
A
SER
12
-90.96
-72.65
17
A
PRO
13
-69.75
-173.82
18
A
SER
12
-90.70
-72.80
18
A
PRO
13
-69.70
-174.80
19
A
SER
12
-88.45
-70.93
19
A
PRO
13
-69.84
-174.03
20
A
PRO
13
-69.72
-172.63
lowest energy, model 1
Helical Hairpin Structure of Pardaxin in Lipopolysaccharide Micelles: Studied by NMR Spectroscopy
1
N
N
A
ALA
4
A
ALA
4
HELX_P
A
SER
12
A
SER
12
1
1
9
A
PHE
15
A
PHE
15
HELX_P
A
SER
27
A
SER
27
1
2
13
A
SER
29
A
SER
29
HELX_P
A
GLU
33
A
GLU
33
5
3
5
ANTIMICROBIAL PROTEIN
Pardaxin, Pa4, LPS, trNOE, antimicrobial peptide, STD NMR, Ion transport, Porin, Secreted, Toxin, Transmembrane, Transport, ANTIMICROBIAL PROTEIN
PAP4_PARMA
UNP
1
1
P81861
GFFALIPKIISSPLFKTLLSAVGSALSSSGGQE
1
33
2KNS
1
33
P81861
A
1
1
33