1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Spadaccini, R.
D'Errico, G.
D'Alessio, V.
Notomista, E.
Bianchi, A.
Merola, M.
Picone, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
Biochim.Biophys.Acta
BBACAQ
0113
0006-3002
10.1016/j.bbamem.2009.10.018
19891955
Structural characterization of the transmembrane proximal region of the hepatitis C virus E1 glycoprotein
2009
10.2210/pdb2knu/pdb
pdb_00002knu
3328.972
Genome polyprotein
UNP residues 138-166
1
syn
polymer
e1_peptide
no
no
TGHRMAWDMMMNWSPTAALVVAQLLRIPQ
TGHRMAWDMMMNWSPTAALVVAQLLRIPQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
database_2
pdbx_database_status
repository
Initial release
Version format compliance
Data collection
Derived calculations
Other
Database references
Other
1
0
2010-01-12
1
1
2011-07-13
1
2
2020-02-26
1
3
2023-06-14
_pdbx_database_status.status_code_cs
_pdbx_nmr_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
BMRB
Y
PDBJ
2009-09-04
REL
REL
REL
REL
Peptide synthesis
11103
Hepatitis C virus
sample
structures with the lowest energy
100
10
1
2D 1H-1H TOCSY
2D 1H-1H COSY
2D 1H-1H NOESY
2D 1H-1H TOCSY
2D 1H-1H COSY
2D 1H-1H NOESY
1
mM
1
mM
4.5
ambient
300
K
torsion angle dynamics
1
lowest energy
1mM e1-1, 80% hexafluoroisopropanol/20%D2O
80% hexafluoroisopropanol/20%D2O
1mM e1-2, 80% hexafluoroisopropanol/20% H2O
80% hexafluoroisopropanol/20% H2O
Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, Kollm
refinement
Amber
Guntert, Mumenthaler, Wuthrich
structure solution
CYANA
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax
processing
NMRPipe
Johnson, One Moon Scientific
chemical shift assignment
NMRView
Johnson, One Moon Scientific
peak picking
NMRView
600
Bruker
DRX
Bruker DRX
THR
1
n
1
THR
1
A
GLY
2
n
2
GLY
2
A
HIS
3
n
3
HIS
3
A
ARG
4
n
4
ARG
4
A
MET
5
n
5
MET
5
A
ALA
6
n
6
ALA
6
A
TRP
7
n
7
TRP
7
A
ASP
8
n
8
ASP
8
A
MET
9
n
9
MET
9
A
MET
10
n
10
MET
10
A
MET
11
n
11
MET
11
A
ASN
12
n
12
ASN
12
A
TRP
13
n
13
TRP
13
A
SER
14
n
14
SER
14
A
PRO
15
n
15
PRO
15
A
THR
16
n
16
THR
16
A
ALA
17
n
17
ALA
17
A
ALA
18
n
18
ALA
18
A
LEU
19
n
19
LEU
19
A
VAL
20
n
20
VAL
20
A
VAL
21
n
21
VAL
21
A
ALA
22
n
22
ALA
22
A
GLN
23
n
23
GLN
23
A
LEU
24
n
24
LEU
24
A
LEU
25
n
25
LEU
25
A
ARG
26
n
26
ARG
26
A
ILE
27
n
27
ILE
27
A
PRO
28
n
28
PRO
28
A
GLN
29
n
29
GLN
29
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
O
GLN
29
A
O
GLN
29
1
Y
2
A
O
GLN
29
A
O
GLN
29
1
Y
3
A
O
GLN
29
A
O
GLN
29
1
Y
4
A
O
GLN
29
A
O
GLN
29
1
Y
5
A
O
GLN
29
A
O
GLN
29
1
Y
6
A
O
GLN
29
A
O
GLN
29
1
Y
7
A
O
GLN
29
A
O
GLN
29
1
Y
8
A
O
GLN
29
A
O
GLN
29
1
Y
9
A
O
GLN
29
A
O
GLN
29
1
Y
10
A
O
GLN
29
A
O
GLN
29
1
Y
2
A
ARG
26
0.101
SIDE CHAIN
1
A
HIS
3
53.77
-143.78
1
A
ARG
4
38.63
68.57
1
A
MET
5
90.37
-1.70
1
A
MET
9
-162.94
-52.67
1
A
TRP
13
-74.17
-95.92
1
A
PRO
15
-69.39
49.61
1
A
LEU
25
-155.33
64.22
2
A
ARG
4
52.24
79.73
2
A
MET
9
75.02
-49.84
2
A
SER
14
-172.04
68.14
2
A
PRO
15
-64.91
58.43
2
A
THR
16
-43.61
-72.15
2
A
LEU
25
-167.66
61.61
3
A
ARG
4
65.12
83.15
3
A
MET
9
73.21
-56.23
3
A
ASN
12
-104.99
68.93
3
A
SER
14
-172.45
60.68
3
A
PRO
15
-73.99
42.10
3
A
THR
16
-24.08
-66.83
3
A
LEU
24
-57.15
-75.07
3
A
LEU
25
-172.08
74.79
3
A
PRO
28
-82.56
49.94
4
A
HIS
3
174.12
-48.95
4
A
MET
9
79.61
-55.40
4
A
TRP
13
-75.26
-82.54
4
A
SER
14
-150.29
52.17
4
A
THR
16
-29.89
-55.25
4
A
LEU
24
-68.45
-73.49
4
A
LEU
25
-176.13
58.11
5
A
HIS
3
46.88
-132.91
5
A
ARG
4
54.68
-143.22
5
A
MET
9
73.64
-58.11
5
A
TRP
13
-103.65
-83.91
5
A
SER
14
-157.58
58.86
5
A
PRO
15
-71.08
28.69
5
A
THR
16
-15.06
-70.47
5
A
LEU
25
179.43
80.81
6
A
HIS
3
55.98
-159.62
6
A
ARG
4
67.76
-69.50
6
A
MET
5
-145.15
58.21
6
A
MET
9
68.95
-57.34
6
A
TRP
13
-77.59
-76.54
6
A
SER
14
-160.86
55.85
6
A
PRO
15
-72.34
37.57
6
A
THR
16
-18.56
-75.40
6
A
LEU
25
-170.45
67.49
7
A
ARG
4
-140.70
-51.96
7
A
MET
5
-147.22
53.66
7
A
MET
9
68.60
-56.41
7
A
ASN
12
-140.98
49.41
7
A
SER
14
-178.54
54.86
7
A
PRO
15
-74.41
42.32
7
A
LEU
24
-61.78
-73.67
7
A
LEU
25
-173.91
77.75
8
A
HIS
3
175.03
-164.23
8
A
ARG
4
65.24
-69.92
8
A
MET
9
72.04
-61.93
8
A
TRP
13
-93.46
-82.73
8
A
SER
14
-159.70
62.76
8
A
PRO
15
-72.39
49.53
8
A
THR
16
-39.29
-72.11
8
A
LEU
25
-177.46
76.67
9
A
HIS
3
106.64
-128.09
9
A
ARG
4
56.93
-156.43
9
A
MET
9
74.91
-63.84
9
A
TRP
13
-75.36
-90.22
9
A
PRO
15
-73.03
48.04
9
A
ILE
27
61.42
-167.97
10
A
HIS
3
54.98
-163.01
10
A
ARG
4
70.66
-62.67
10
A
MET
9
70.15
-59.73
10
A
TRP
13
-70.36
-75.31
10
A
SER
14
-158.68
55.36
10
A
PRO
15
-69.27
12.69
10
A
LEU
24
-63.61
-76.18
10
A
LEU
25
-174.57
81.08
10
A
PRO
28
-81.66
46.53
lowest energy, model 1
Solution structure of the transmembrane proximal region of the hepatis C virus E1 glycoprotein
1
N
N
A
MET
5
A
MET
5
HELX_P
A
MET
9
A
MET
9
5
1
5
A
ALA
17
A
ALA
17
HELX_P
A
LEU
25
A
LEU
25
1
2
9
MEMBRANE PROTEIN
HCV, pretransmembrane, glycoprotein, Envelope protein, Transmembrane, MEMBRANE PROTEIN
Q9WG48_9HEPC
UNP
1
138
Q9WG48
TGHRMAWDMMMNWSPTAALVVAQLLRIPQ
138
166
2KNU
1
29
Q9WG48
A
1
1
29