1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Spadaccini, R. D'Errico, G. D'Alessio, V. Notomista, E. Bianchi, A. Merola, M. Picone, D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking NE Biochim.Biophys.Acta BBACAQ 0113 0006-3002 10.1016/j.bbamem.2009.10.018 19891955 Structural characterization of the transmembrane proximal region of the hepatitis C virus E1 glycoprotein 2009 10.2210/pdb2knu/pdb pdb_00002knu 3328.972 Genome polyprotein UNP residues 138-166 1 syn polymer e1_peptide no no TGHRMAWDMMMNWSPTAALVVAQLLRIPQ TGHRMAWDMMMNWSPTAALVVAQLLRIPQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list database_2 pdbx_database_status repository Initial release Version format compliance Data collection Derived calculations Other Database references Other 1 0 2010-01-12 1 1 2011-07-13 1 2 2020-02-26 1 3 2023-06-14 _pdbx_database_status.status_code_cs _pdbx_nmr_software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data BMRB Y PDBJ 2009-09-04 REL REL REL REL Peptide synthesis 11103 Hepatitis C virus sample structures with the lowest energy 100 10 1 2D 1H-1H TOCSY 2D 1H-1H COSY 2D 1H-1H NOESY 2D 1H-1H TOCSY 2D 1H-1H COSY 2D 1H-1H NOESY 1 mM 1 mM 4.5 ambient 300 K torsion angle dynamics 1 lowest energy 1mM e1-1, 80% hexafluoroisopropanol/20%D2O 80% hexafluoroisopropanol/20%D2O 1mM e1-2, 80% hexafluoroisopropanol/20% H2O 80% hexafluoroisopropanol/20% H2O Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, Kollm refinement Amber Guntert, Mumenthaler, Wuthrich structure solution CYANA Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, Bax processing NMRPipe Johnson, One Moon Scientific chemical shift assignment NMRView Johnson, One Moon Scientific peak picking NMRView 600 Bruker DRX Bruker DRX THR 1 n 1 THR 1 A GLY 2 n 2 GLY 2 A HIS 3 n 3 HIS 3 A ARG 4 n 4 ARG 4 A MET 5 n 5 MET 5 A ALA 6 n 6 ALA 6 A TRP 7 n 7 TRP 7 A ASP 8 n 8 ASP 8 A MET 9 n 9 MET 9 A MET 10 n 10 MET 10 A MET 11 n 11 MET 11 A ASN 12 n 12 ASN 12 A TRP 13 n 13 TRP 13 A SER 14 n 14 SER 14 A PRO 15 n 15 PRO 15 A THR 16 n 16 THR 16 A ALA 17 n 17 ALA 17 A ALA 18 n 18 ALA 18 A LEU 19 n 19 LEU 19 A VAL 20 n 20 VAL 20 A VAL 21 n 21 VAL 21 A ALA 22 n 22 ALA 22 A GLN 23 n 23 GLN 23 A LEU 24 n 24 LEU 24 A LEU 25 n 25 LEU 25 A ARG 26 n 26 ARG 26 A ILE 27 n 27 ILE 27 A PRO 28 n 28 PRO 28 A GLN 29 n 29 GLN 29 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A O GLN 29 A O GLN 29 1 Y 2 A O GLN 29 A O GLN 29 1 Y 3 A O GLN 29 A O GLN 29 1 Y 4 A O GLN 29 A O GLN 29 1 Y 5 A O GLN 29 A O GLN 29 1 Y 6 A O GLN 29 A O GLN 29 1 Y 7 A O GLN 29 A O GLN 29 1 Y 8 A O GLN 29 A O GLN 29 1 Y 9 A O GLN 29 A O GLN 29 1 Y 10 A O GLN 29 A O GLN 29 1 Y 2 A ARG 26 0.101 SIDE CHAIN 1 A HIS 3 53.77 -143.78 1 A ARG 4 38.63 68.57 1 A MET 5 90.37 -1.70 1 A MET 9 -162.94 -52.67 1 A TRP 13 -74.17 -95.92 1 A PRO 15 -69.39 49.61 1 A LEU 25 -155.33 64.22 2 A ARG 4 52.24 79.73 2 A MET 9 75.02 -49.84 2 A SER 14 -172.04 68.14 2 A PRO 15 -64.91 58.43 2 A THR 16 -43.61 -72.15 2 A LEU 25 -167.66 61.61 3 A ARG 4 65.12 83.15 3 A MET 9 73.21 -56.23 3 A ASN 12 -104.99 68.93 3 A SER 14 -172.45 60.68 3 A PRO 15 -73.99 42.10 3 A THR 16 -24.08 -66.83 3 A LEU 24 -57.15 -75.07 3 A LEU 25 -172.08 74.79 3 A PRO 28 -82.56 49.94 4 A HIS 3 174.12 -48.95 4 A MET 9 79.61 -55.40 4 A TRP 13 -75.26 -82.54 4 A SER 14 -150.29 52.17 4 A THR 16 -29.89 -55.25 4 A LEU 24 -68.45 -73.49 4 A LEU 25 -176.13 58.11 5 A HIS 3 46.88 -132.91 5 A ARG 4 54.68 -143.22 5 A MET 9 73.64 -58.11 5 A TRP 13 -103.65 -83.91 5 A SER 14 -157.58 58.86 5 A PRO 15 -71.08 28.69 5 A THR 16 -15.06 -70.47 5 A LEU 25 179.43 80.81 6 A HIS 3 55.98 -159.62 6 A ARG 4 67.76 -69.50 6 A MET 5 -145.15 58.21 6 A MET 9 68.95 -57.34 6 A TRP 13 -77.59 -76.54 6 A SER 14 -160.86 55.85 6 A PRO 15 -72.34 37.57 6 A THR 16 -18.56 -75.40 6 A LEU 25 -170.45 67.49 7 A ARG 4 -140.70 -51.96 7 A MET 5 -147.22 53.66 7 A MET 9 68.60 -56.41 7 A ASN 12 -140.98 49.41 7 A SER 14 -178.54 54.86 7 A PRO 15 -74.41 42.32 7 A LEU 24 -61.78 -73.67 7 A LEU 25 -173.91 77.75 8 A HIS 3 175.03 -164.23 8 A ARG 4 65.24 -69.92 8 A MET 9 72.04 -61.93 8 A TRP 13 -93.46 -82.73 8 A SER 14 -159.70 62.76 8 A PRO 15 -72.39 49.53 8 A THR 16 -39.29 -72.11 8 A LEU 25 -177.46 76.67 9 A HIS 3 106.64 -128.09 9 A ARG 4 56.93 -156.43 9 A MET 9 74.91 -63.84 9 A TRP 13 -75.36 -90.22 9 A PRO 15 -73.03 48.04 9 A ILE 27 61.42 -167.97 10 A HIS 3 54.98 -163.01 10 A ARG 4 70.66 -62.67 10 A MET 9 70.15 -59.73 10 A TRP 13 -70.36 -75.31 10 A SER 14 -158.68 55.36 10 A PRO 15 -69.27 12.69 10 A LEU 24 -63.61 -76.18 10 A LEU 25 -174.57 81.08 10 A PRO 28 -81.66 46.53 lowest energy, model 1 Solution structure of the transmembrane proximal region of the hepatis C virus E1 glycoprotein 1 N N A MET 5 A MET 5 HELX_P A MET 9 A MET 9 5 1 5 A ALA 17 A ALA 17 HELX_P A LEU 25 A LEU 25 1 2 9 MEMBRANE PROTEIN HCV, pretransmembrane, glycoprotein, Envelope protein, Transmembrane, MEMBRANE PROTEIN Q9WG48_9HEPC UNP 1 138 Q9WG48 TGHRMAWDMMMNWSPTAALVVAQLLRIPQ 138 166 2KNU 1 29 Q9WG48 A 1 1 29