1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Volkman, B.F. Tyler, R.C. Peterson, F.C. Center for Eukaryotic Structural Genomics (CESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Structural Bioinformatics, 2nd edition 978-0-470-18105-8 93 142 Macromolecular Structure Determination by NMR Sepectroscopy 2009 10.2210/pdb2koj/pdb pdb_00002koj 12044.837 Partitioning defective 3 homolog PDZ 2 domain 1 man polymer PARD-3, PAR-3, Atypical PKC isotype-specific-interacting protein, ASIP, Ephrin-interacting protein, PHIP no no GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV VSLLRSTKMEGTVSLLVFRQEEAFHPREMNA GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV VSLLRSTKMEGTVSLLVFRQEEAFHPREMNA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample Par-3, Par3, Pard3 10090 Mus musculus 562 Escherichia coli SG130099[pREP4] pQE30-8HT Center for Eukaryotic Structural Genomics CESG PSI, Protein Structure Initiative database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2009-11-10 1 1 2011-07-13 1 2 2022-03-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Y BMRB Y RCSB 2009-09-23 REL REL 1307 219 491 209 388 target function 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 3D_13C-separated_NOESY (AROMATIC) 1 mM [U-100% 13C; U-100% 15N] 20 mM 50 mM 0.02 % 54 7.0 AMBIENT 298 K STRUCTURES ARE BASED ON A TOTAL OF 1307 NOE CONSTRAINTS (219 INTRA, 388 SEQUENTIAL, 209 MEDIUM, AND 491 LONG RANGE) AND 117 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT 1 lowest energy 1 mM [U-100% 13C; U-100% 15N] mPar3 PDZ2, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % sodium azide, 90% H2O, 10% D2O 90% H2O/10% D2O Bruker collection TopSpin 2.1 Delagio,F. et al. processing NMRPipe 2007 Eccles, C., Guntert, P., Billeter, M., Wuthrich, K. data analysis XEASY 1.3 R.W. Glaser data analysis SPSCAN 1.1.0 C. Bartels data analysis GARANT 2.1 Guntert, P. structural calculation CYANA 2.1 SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. refinement Xplor-NIH 2.9.3 600 Bruker AVANCE II Bruker Avance II GLY 448 n 1 GLY 448 A SER 449 n 2 SER 449 A VAL 450 n 3 VAL 450 A TYR 451 n 4 TYR 451 A ASN 452 n 5 ASN 452 A THR 453 n 6 THR 453 A LYS 454 n 7 LYS 454 A LYS 455 n 8 LYS 455 A VAL 456 n 9 VAL 456 A GLY 457 n 10 GLY 457 A LYS 458 n 11 LYS 458 A ARG 459 n 12 ARG 459 A LEU 460 n 13 LEU 460 A ASN 461 n 14 ASN 461 A ILE 462 n 15 ILE 462 A GLN 463 n 16 GLN 463 A LEU 464 n 17 LEU 464 A LYS 465 n 18 LYS 465 A LYS 466 n 19 LYS 466 A GLY 467 n 20 GLY 467 A THR 468 n 21 THR 468 A GLU 469 n 22 GLU 469 A GLY 470 n 23 GLY 470 A LEU 471 n 24 LEU 471 A GLY 472 n 25 GLY 472 A PHE 473 n 26 PHE 473 A SER 474 n 27 SER 474 A ILE 475 n 28 ILE 475 A THR 476 n 29 THR 476 A SER 477 n 30 SER 477 A ARG 478 n 31 ARG 478 A ASP 479 n 32 ASP 479 A VAL 480 n 33 VAL 480 A THR 481 n 34 THR 481 A ILE 482 n 35 ILE 482 A GLY 483 n 36 GLY 483 A GLY 484 n 37 GLY 484 A SER 485 n 38 SER 485 A ALA 486 n 39 ALA 486 A PRO 487 n 40 PRO 487 A ILE 488 n 41 ILE 488 A TYR 489 n 42 TYR 489 A VAL 490 n 43 VAL 490 A LYS 491 n 44 LYS 491 A ASN 492 n 45 ASN 492 A ILE 493 n 46 ILE 493 A LEU 494 n 47 LEU 494 A PRO 495 n 48 PRO 495 A ARG 496 n 49 ARG 496 A GLY 497 n 50 GLY 497 A ALA 498 n 51 ALA 498 A ALA 499 n 52 ALA 499 A ILE 500 n 53 ILE 500 A GLN 501 n 54 GLN 501 A ASP 502 n 55 ASP 502 A GLY 503 n 56 GLY 503 A ARG 504 n 57 ARG 504 A LEU 505 n 58 LEU 505 A LYS 506 n 59 LYS 506 A ALA 507 n 60 ALA 507 A GLY 508 n 61 GLY 508 A ASP 509 n 62 ASP 509 A ARG 510 n 63 ARG 510 A LEU 511 n 64 LEU 511 A ILE 512 n 65 ILE 512 A GLU 513 n 66 GLU 513 A VAL 514 n 67 VAL 514 A ASN 515 n 68 ASN 515 A GLY 516 n 69 GLY 516 A VAL 517 n 70 VAL 517 A ASP 518 n 71 ASP 518 A LEU 519 n 72 LEU 519 A ALA 520 n 73 ALA 520 A GLY 521 n 74 GLY 521 A LYS 522 n 75 LYS 522 A SER 523 n 76 SER 523 A GLN 524 n 77 GLN 524 A GLU 525 n 78 GLU 525 A GLU 526 n 79 GLU 526 A VAL 527 n 80 VAL 527 A VAL 528 n 81 VAL 528 A SER 529 n 82 SER 529 A LEU 530 n 83 LEU 530 A LEU 531 n 84 LEU 531 A ARG 532 n 85 ARG 532 A SER 533 n 86 SER 533 A THR 534 n 87 THR 534 A LYS 535 n 88 LYS 535 A MET 536 n 89 MET 536 A GLU 537 n 90 GLU 537 A GLY 538 n 91 GLY 538 A THR 539 n 92 THR 539 A VAL 540 n 93 VAL 540 A SER 541 n 94 SER 541 A LEU 542 n 95 LEU 542 A LEU 543 n 96 LEU 543 A VAL 544 n 97 VAL 544 A PHE 545 n 98 PHE 545 A ARG 546 n 99 ARG 546 A GLN 547 n 100 GLN 547 A GLU 548 n 101 GLU 548 A GLU 549 n 102 GLU 549 A ALA 550 n 103 ALA 550 A PHE 551 n 104 PHE 551 A HIS 552 n 105 HIS 552 A PRO 553 n 106 PRO 553 A ARG 554 n 107 ARG 554 A GLU 555 n 108 GLU 555 A MET 556 n 109 MET 556 A ASN 557 n 110 ASN 557 A ALA 558 n 111 ALA 558 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 460 A N LEU 13 A O VAL 544 A O VAL 97 A O LEU 543 A O LEU 96 A N GLU 513 A N GLU 66 A O LEU 511 A O LEU 64 A N ILE 488 A N ILE 41 A O TYR 489 A O TYR 42 A N THR 476 A N THR 29 A N LEU 460 A N LEU 13 A O VAL 544 A O VAL 97 A O LEU 543 A O LEU 96 A N GLU 513 A N GLU 66 A N VAL 514 A N VAL 67 A O VAL 517 A O VAL 70 9 A A HZ3 O LYS LYS 466 535 1.59 9 A A O HG1 SER THR 533 534 1.59 11 A A HZ3 OD2 LYS ASP 506 509 1.59 14 A A HZ1 O LYS LYS 466 535 1.60 19 A A HZ3 O LYS LYS 466 535 1.57 1 A LYS 455 174.98 164.54 1 A VAL 456 69.22 163.02 1 A ILE 482 -139.98 -59.10 1 A PRO 487 -105.70 -166.34 1 A ASN 515 59.34 12.11 1 A THR 534 63.00 97.77 2 A THR 481 -68.30 91.11 2 A ILE 482 -140.93 -46.22 2 A THR 534 62.60 116.33 2 A ASN 557 69.78 -68.94 3 A LYS 455 -114.12 79.33 3 A ASP 479 70.85 95.75 3 A MET 536 177.55 149.59 3 A GLU 548 -106.64 77.10 3 A ARG 554 68.54 170.16 4 A SER 485 68.64 -175.01 4 A ASN 492 -174.60 149.46 4 A THR 534 65.72 121.35 4 A ASN 557 65.60 -79.86 5 A ASP 479 77.17 110.22 5 A SER 485 71.50 138.78 5 A ASN 492 -177.07 144.62 5 A ASN 515 58.69 19.76 5 A THR 534 69.36 109.34 5 A MET 536 -92.57 44.87 5 A ARG 554 67.55 95.59 5 A ASN 557 66.41 87.70 6 A VAL 480 67.20 85.46 6 A THR 481 -175.08 -159.86 6 A ALA 486 68.34 95.31 6 A LEU 519 -141.62 17.24 6 A THR 534 63.77 109.96 6 A ASN 557 -165.51 94.92 7 A THR 481 -160.00 36.88 7 A SER 485 68.19 84.00 7 A ILE 512 -107.77 -62.64 7 A ASN 515 59.96 10.46 7 A THR 534 57.50 89.90 7 A GLU 549 69.41 131.69 8 A VAL 480 62.81 71.72 8 A ASN 515 57.75 13.04 8 A THR 534 61.70 128.88 8 A PRO 553 -72.38 29.99 8 A ARG 554 67.35 173.93 9 A VAL 480 78.18 99.84 9 A SER 485 70.14 -60.48 9 A ALA 486 72.60 97.47 9 A LEU 519 -140.21 13.70 9 A THR 534 67.93 179.42 9 A PRO 553 -68.13 0.14 9 A ARG 554 75.33 128.11 9 A MET 556 75.13 143.52 10 A THR 481 65.98 88.53 10 A LEU 519 -140.96 12.95 10 A THR 534 73.38 -45.71 10 A LYS 535 62.04 103.78 10 A GLU 549 -66.50 86.83 10 A ALA 550 -151.11 47.17 10 A ASN 557 78.28 82.54 11 A VAL 480 -100.62 -78.23 11 A ILE 482 72.04 -66.67 11 A ASN 492 -172.89 143.41 11 A THR 534 52.36 81.43 11 A GLU 549 59.51 -89.48 11 A ALA 550 63.83 -72.93 11 A PRO 553 -76.09 35.48 11 A GLU 555 65.32 111.39 12 A ILE 482 -176.85 -43.28 12 A THR 534 71.41 -22.15 12 A LYS 535 55.16 103.96 12 A MET 536 -75.42 46.18 13 A ASN 452 74.48 91.69 13 A THR 481 -178.30 -40.75 13 A ILE 482 -155.95 -33.94 13 A ALA 486 62.24 89.54 13 A ASN 492 177.01 148.08 13 A ASN 515 59.79 5.76 13 A THR 534 69.93 102.83 14 A THR 534 37.54 100.84 14 A MET 536 -113.22 67.29 14 A GLU 548 68.71 -176.50 14 A ALA 550 65.67 -173.89 15 A VAL 450 -138.04 -45.63 15 A VAL 456 67.91 173.71 15 A ASP 479 74.62 138.27 15 A ILE 482 66.85 97.56 15 A SER 485 -154.47 -36.43 15 A ALA 486 72.89 106.96 15 A ASN 492 -172.27 149.68 15 A THR 534 56.92 84.31 16 A ILE 482 70.49 97.54 16 A ILE 512 -96.28 -61.37 16 A ASN 515 58.88 12.02 16 A THR 534 73.25 96.48 16 A ARG 554 -99.02 -68.53 16 A GLU 555 66.74 99.37 16 A ASN 557 171.82 166.65 17 A LYS 454 -99.42 -72.90 17 A LYS 455 56.41 96.95 17 A ASN 515 67.24 -61.57 17 A THR 534 55.88 95.66 17 A ASN 557 -157.18 78.72 18 A ASN 492 -178.88 149.05 18 A ILE 512 -95.61 -61.26 18 A THR 534 55.07 100.72 18 A MET 536 -106.64 54.54 18 A GLU 548 46.20 -149.63 18 A PRO 553 -55.68 106.12 19 A LYS 454 68.17 -171.94 19 A LYS 455 -83.71 39.72 19 A VAL 456 71.74 95.95 19 A ILE 482 63.74 102.23 19 A SER 485 79.05 169.99 19 A ASN 492 -172.10 138.96 19 A ASN 515 57.75 12.68 19 A THR 534 69.23 128.91 19 A ALA 550 -128.18 -77.56 19 A ASN 557 73.04 97.49 20 A VAL 456 -96.64 31.09 20 A ASP 479 66.15 -8.75 20 A VAL 480 -56.15 102.21 20 A ILE 482 -144.09 -36.06 20 A ALA 486 66.36 85.55 20 A PRO 487 -99.62 -156.83 20 A THR 534 64.43 94.55 20 A MET 536 -99.77 32.89 20 A GLU 548 -90.89 -71.05 20 A GLU 549 52.18 134.21 20 A PRO 553 -57.72 -78.55 lowest energy, model 1 Solution structure of mouse Par-3 PDZ2 (residues 450-558) 1 N N A GLY 497 A GLY 50 HELX_P A GLY 503 A GLY 56 1 1 7 A SER 523 A SER 76 HELX_P A THR 534 A THR 87 1 2 12 SIGNALING PROTEIN Par-3, PDZ domain, structural genomics, Alternative splicing, Cell cycle, Cell division, Cell junction, Coiled coil, Cytoplasm, Cytoskeleton, Membrane, Phosphoprotein, Tight junction, SIGNALING PROTEIN, PSI-2, Protein Structure Initiative, Center for Eukaryotic Structural Genomics, CESG PARD3_MOUSE UNP 1 450 Q99NH2 VYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVS LLRSTKMEGTVSLLVFRQEEAFHPREMNA 450 558 2KOJ 450 558 Q99NH2 A 1 3 111 1 expression tag GLY 448 2KOJ A Q99NH2 UNP 1 1 expression tag SER 449 2KOJ A Q99NH2 UNP 2 5 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LYS 458 A LYS 11 A LYS 465 A LYS 18 A THR 539 A THR 92 A ARG 546 A ARG 99 A ARG 510 A ARG 63 A VAL 514 A VAL 67 A ILE 488 A ILE 41 A ILE 493 A ILE 46 A PHE 473 A PHE 26 A SER 477 A SER 30 A LYS 458 A LYS 11 A LYS 465 A LYS 18 A THR 539 A THR 92 A ARG 546 A ARG 99 A ARG 510 A ARG 63 A VAL 514 A VAL 67 A VAL 517 A VAL 70 A ASP 518 A ASP 71