1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Volkman, B.F.
Tyler, R.C.
Peterson, F.C.
Center for Eukaryotic Structural Genomics (CESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Structural Bioinformatics, 2nd edition
978-0-470-18105-8
93
142
Macromolecular Structure Determination by NMR Sepectroscopy
2009
10.2210/pdb2koj/pdb
pdb_00002koj
12044.837
Partitioning defective 3 homolog
PDZ 2 domain
1
man
polymer
PARD-3, PAR-3, Atypical PKC isotype-specific-interacting protein, ASIP, Ephrin-interacting protein, PHIP
no
no
GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV
VSLLRSTKMEGTVSLLVFRQEEAFHPREMNA
GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV
VSLLRSTKMEGTVSLLVFRQEEAFHPREMNA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Par-3, Par3, Pard3
10090
Mus musculus
562
Escherichia coli
SG130099[pREP4]
pQE30-8HT
Center for Eukaryotic Structural Genomics
CESG
PSI, Protein Structure Initiative
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
1
0
2009-11-10
1
1
2011-07-13
1
2
2022-03-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
BMRB
Y
RCSB
2009-09-23
REL
REL
1307
219
491
209
388
target function
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
3D_13C-separated_NOESY (AROMATIC)
1
mM
[U-100% 13C; U-100% 15N]
20
mM
50
mM
0.02
%
54
7.0
AMBIENT
298
K
STRUCTURES ARE BASED ON A TOTAL OF 1307 NOE CONSTRAINTS (219 INTRA, 388 SEQUENTIAL, 209 MEDIUM, AND 491 LONG RANGE) AND 117 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS.
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENT
1
lowest energy
1 mM [U-100% 13C; U-100% 15N] mPar3 PDZ2, 20 mM sodium phosphate, 50 mM sodium chloride, 0.02 % sodium azide, 90% H2O, 10% D2O
90% H2O/10% D2O
Bruker
collection
TopSpin
2.1
Delagio,F. et al.
processing
NMRPipe
2007
Eccles, C., Guntert, P., Billeter, M., Wuthrich, K.
data analysis
XEASY
1.3
R.W. Glaser
data analysis
SPSCAN
1.1.0
C. Bartels
data analysis
GARANT
2.1
Guntert, P.
structural calculation
CYANA
2.1
SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M.
refinement
Xplor-NIH
2.9.3
600
Bruker
AVANCE II
Bruker Avance II
GLY
448
n
1
GLY
448
A
SER
449
n
2
SER
449
A
VAL
450
n
3
VAL
450
A
TYR
451
n
4
TYR
451
A
ASN
452
n
5
ASN
452
A
THR
453
n
6
THR
453
A
LYS
454
n
7
LYS
454
A
LYS
455
n
8
LYS
455
A
VAL
456
n
9
VAL
456
A
GLY
457
n
10
GLY
457
A
LYS
458
n
11
LYS
458
A
ARG
459
n
12
ARG
459
A
LEU
460
n
13
LEU
460
A
ASN
461
n
14
ASN
461
A
ILE
462
n
15
ILE
462
A
GLN
463
n
16
GLN
463
A
LEU
464
n
17
LEU
464
A
LYS
465
n
18
LYS
465
A
LYS
466
n
19
LYS
466
A
GLY
467
n
20
GLY
467
A
THR
468
n
21
THR
468
A
GLU
469
n
22
GLU
469
A
GLY
470
n
23
GLY
470
A
LEU
471
n
24
LEU
471
A
GLY
472
n
25
GLY
472
A
PHE
473
n
26
PHE
473
A
SER
474
n
27
SER
474
A
ILE
475
n
28
ILE
475
A
THR
476
n
29
THR
476
A
SER
477
n
30
SER
477
A
ARG
478
n
31
ARG
478
A
ASP
479
n
32
ASP
479
A
VAL
480
n
33
VAL
480
A
THR
481
n
34
THR
481
A
ILE
482
n
35
ILE
482
A
GLY
483
n
36
GLY
483
A
GLY
484
n
37
GLY
484
A
SER
485
n
38
SER
485
A
ALA
486
n
39
ALA
486
A
PRO
487
n
40
PRO
487
A
ILE
488
n
41
ILE
488
A
TYR
489
n
42
TYR
489
A
VAL
490
n
43
VAL
490
A
LYS
491
n
44
LYS
491
A
ASN
492
n
45
ASN
492
A
ILE
493
n
46
ILE
493
A
LEU
494
n
47
LEU
494
A
PRO
495
n
48
PRO
495
A
ARG
496
n
49
ARG
496
A
GLY
497
n
50
GLY
497
A
ALA
498
n
51
ALA
498
A
ALA
499
n
52
ALA
499
A
ILE
500
n
53
ILE
500
A
GLN
501
n
54
GLN
501
A
ASP
502
n
55
ASP
502
A
GLY
503
n
56
GLY
503
A
ARG
504
n
57
ARG
504
A
LEU
505
n
58
LEU
505
A
LYS
506
n
59
LYS
506
A
ALA
507
n
60
ALA
507
A
GLY
508
n
61
GLY
508
A
ASP
509
n
62
ASP
509
A
ARG
510
n
63
ARG
510
A
LEU
511
n
64
LEU
511
A
ILE
512
n
65
ILE
512
A
GLU
513
n
66
GLU
513
A
VAL
514
n
67
VAL
514
A
ASN
515
n
68
ASN
515
A
GLY
516
n
69
GLY
516
A
VAL
517
n
70
VAL
517
A
ASP
518
n
71
ASP
518
A
LEU
519
n
72
LEU
519
A
ALA
520
n
73
ALA
520
A
GLY
521
n
74
GLY
521
A
LYS
522
n
75
LYS
522
A
SER
523
n
76
SER
523
A
GLN
524
n
77
GLN
524
A
GLU
525
n
78
GLU
525
A
GLU
526
n
79
GLU
526
A
VAL
527
n
80
VAL
527
A
VAL
528
n
81
VAL
528
A
SER
529
n
82
SER
529
A
LEU
530
n
83
LEU
530
A
LEU
531
n
84
LEU
531
A
ARG
532
n
85
ARG
532
A
SER
533
n
86
SER
533
A
THR
534
n
87
THR
534
A
LYS
535
n
88
LYS
535
A
MET
536
n
89
MET
536
A
GLU
537
n
90
GLU
537
A
GLY
538
n
91
GLY
538
A
THR
539
n
92
THR
539
A
VAL
540
n
93
VAL
540
A
SER
541
n
94
SER
541
A
LEU
542
n
95
LEU
542
A
LEU
543
n
96
LEU
543
A
VAL
544
n
97
VAL
544
A
PHE
545
n
98
PHE
545
A
ARG
546
n
99
ARG
546
A
GLN
547
n
100
GLN
547
A
GLU
548
n
101
GLU
548
A
GLU
549
n
102
GLU
549
A
ALA
550
n
103
ALA
550
A
PHE
551
n
104
PHE
551
A
HIS
552
n
105
HIS
552
A
PRO
553
n
106
PRO
553
A
ARG
554
n
107
ARG
554
A
GLU
555
n
108
GLU
555
A
MET
556
n
109
MET
556
A
ASN
557
n
110
ASN
557
A
ALA
558
n
111
ALA
558
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
460
A
N
LEU
13
A
O
VAL
544
A
O
VAL
97
A
O
LEU
543
A
O
LEU
96
A
N
GLU
513
A
N
GLU
66
A
O
LEU
511
A
O
LEU
64
A
N
ILE
488
A
N
ILE
41
A
O
TYR
489
A
O
TYR
42
A
N
THR
476
A
N
THR
29
A
N
LEU
460
A
N
LEU
13
A
O
VAL
544
A
O
VAL
97
A
O
LEU
543
A
O
LEU
96
A
N
GLU
513
A
N
GLU
66
A
N
VAL
514
A
N
VAL
67
A
O
VAL
517
A
O
VAL
70
9
A
A
HZ3
O
LYS
LYS
466
535
1.59
9
A
A
O
HG1
SER
THR
533
534
1.59
11
A
A
HZ3
OD2
LYS
ASP
506
509
1.59
14
A
A
HZ1
O
LYS
LYS
466
535
1.60
19
A
A
HZ3
O
LYS
LYS
466
535
1.57
1
A
LYS
455
174.98
164.54
1
A
VAL
456
69.22
163.02
1
A
ILE
482
-139.98
-59.10
1
A
PRO
487
-105.70
-166.34
1
A
ASN
515
59.34
12.11
1
A
THR
534
63.00
97.77
2
A
THR
481
-68.30
91.11
2
A
ILE
482
-140.93
-46.22
2
A
THR
534
62.60
116.33
2
A
ASN
557
69.78
-68.94
3
A
LYS
455
-114.12
79.33
3
A
ASP
479
70.85
95.75
3
A
MET
536
177.55
149.59
3
A
GLU
548
-106.64
77.10
3
A
ARG
554
68.54
170.16
4
A
SER
485
68.64
-175.01
4
A
ASN
492
-174.60
149.46
4
A
THR
534
65.72
121.35
4
A
ASN
557
65.60
-79.86
5
A
ASP
479
77.17
110.22
5
A
SER
485
71.50
138.78
5
A
ASN
492
-177.07
144.62
5
A
ASN
515
58.69
19.76
5
A
THR
534
69.36
109.34
5
A
MET
536
-92.57
44.87
5
A
ARG
554
67.55
95.59
5
A
ASN
557
66.41
87.70
6
A
VAL
480
67.20
85.46
6
A
THR
481
-175.08
-159.86
6
A
ALA
486
68.34
95.31
6
A
LEU
519
-141.62
17.24
6
A
THR
534
63.77
109.96
6
A
ASN
557
-165.51
94.92
7
A
THR
481
-160.00
36.88
7
A
SER
485
68.19
84.00
7
A
ILE
512
-107.77
-62.64
7
A
ASN
515
59.96
10.46
7
A
THR
534
57.50
89.90
7
A
GLU
549
69.41
131.69
8
A
VAL
480
62.81
71.72
8
A
ASN
515
57.75
13.04
8
A
THR
534
61.70
128.88
8
A
PRO
553
-72.38
29.99
8
A
ARG
554
67.35
173.93
9
A
VAL
480
78.18
99.84
9
A
SER
485
70.14
-60.48
9
A
ALA
486
72.60
97.47
9
A
LEU
519
-140.21
13.70
9
A
THR
534
67.93
179.42
9
A
PRO
553
-68.13
0.14
9
A
ARG
554
75.33
128.11
9
A
MET
556
75.13
143.52
10
A
THR
481
65.98
88.53
10
A
LEU
519
-140.96
12.95
10
A
THR
534
73.38
-45.71
10
A
LYS
535
62.04
103.78
10
A
GLU
549
-66.50
86.83
10
A
ALA
550
-151.11
47.17
10
A
ASN
557
78.28
82.54
11
A
VAL
480
-100.62
-78.23
11
A
ILE
482
72.04
-66.67
11
A
ASN
492
-172.89
143.41
11
A
THR
534
52.36
81.43
11
A
GLU
549
59.51
-89.48
11
A
ALA
550
63.83
-72.93
11
A
PRO
553
-76.09
35.48
11
A
GLU
555
65.32
111.39
12
A
ILE
482
-176.85
-43.28
12
A
THR
534
71.41
-22.15
12
A
LYS
535
55.16
103.96
12
A
MET
536
-75.42
46.18
13
A
ASN
452
74.48
91.69
13
A
THR
481
-178.30
-40.75
13
A
ILE
482
-155.95
-33.94
13
A
ALA
486
62.24
89.54
13
A
ASN
492
177.01
148.08
13
A
ASN
515
59.79
5.76
13
A
THR
534
69.93
102.83
14
A
THR
534
37.54
100.84
14
A
MET
536
-113.22
67.29
14
A
GLU
548
68.71
-176.50
14
A
ALA
550
65.67
-173.89
15
A
VAL
450
-138.04
-45.63
15
A
VAL
456
67.91
173.71
15
A
ASP
479
74.62
138.27
15
A
ILE
482
66.85
97.56
15
A
SER
485
-154.47
-36.43
15
A
ALA
486
72.89
106.96
15
A
ASN
492
-172.27
149.68
15
A
THR
534
56.92
84.31
16
A
ILE
482
70.49
97.54
16
A
ILE
512
-96.28
-61.37
16
A
ASN
515
58.88
12.02
16
A
THR
534
73.25
96.48
16
A
ARG
554
-99.02
-68.53
16
A
GLU
555
66.74
99.37
16
A
ASN
557
171.82
166.65
17
A
LYS
454
-99.42
-72.90
17
A
LYS
455
56.41
96.95
17
A
ASN
515
67.24
-61.57
17
A
THR
534
55.88
95.66
17
A
ASN
557
-157.18
78.72
18
A
ASN
492
-178.88
149.05
18
A
ILE
512
-95.61
-61.26
18
A
THR
534
55.07
100.72
18
A
MET
536
-106.64
54.54
18
A
GLU
548
46.20
-149.63
18
A
PRO
553
-55.68
106.12
19
A
LYS
454
68.17
-171.94
19
A
LYS
455
-83.71
39.72
19
A
VAL
456
71.74
95.95
19
A
ILE
482
63.74
102.23
19
A
SER
485
79.05
169.99
19
A
ASN
492
-172.10
138.96
19
A
ASN
515
57.75
12.68
19
A
THR
534
69.23
128.91
19
A
ALA
550
-128.18
-77.56
19
A
ASN
557
73.04
97.49
20
A
VAL
456
-96.64
31.09
20
A
ASP
479
66.15
-8.75
20
A
VAL
480
-56.15
102.21
20
A
ILE
482
-144.09
-36.06
20
A
ALA
486
66.36
85.55
20
A
PRO
487
-99.62
-156.83
20
A
THR
534
64.43
94.55
20
A
MET
536
-99.77
32.89
20
A
GLU
548
-90.89
-71.05
20
A
GLU
549
52.18
134.21
20
A
PRO
553
-57.72
-78.55
lowest energy, model 1
Solution structure of mouse Par-3 PDZ2 (residues 450-558)
1
N
N
A
GLY
497
A
GLY
50
HELX_P
A
GLY
503
A
GLY
56
1
1
7
A
SER
523
A
SER
76
HELX_P
A
THR
534
A
THR
87
1
2
12
SIGNALING PROTEIN
Par-3, PDZ domain, structural genomics, Alternative splicing, Cell cycle, Cell division, Cell junction, Coiled coil, Cytoplasm, Cytoskeleton, Membrane, Phosphoprotein, Tight junction, SIGNALING PROTEIN, PSI-2, Protein Structure Initiative, Center for Eukaryotic Structural Genomics, CESG
PARD3_MOUSE
UNP
1
450
Q99NH2
VYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVS
LLRSTKMEGTVSLLVFRQEEAFHPREMNA
450
558
2KOJ
450
558
Q99NH2
A
1
3
111
1
expression tag
GLY
448
2KOJ
A
Q99NH2
UNP
1
1
expression tag
SER
449
2KOJ
A
Q99NH2
UNP
2
5
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
458
A
LYS
11
A
LYS
465
A
LYS
18
A
THR
539
A
THR
92
A
ARG
546
A
ARG
99
A
ARG
510
A
ARG
63
A
VAL
514
A
VAL
67
A
ILE
488
A
ILE
41
A
ILE
493
A
ILE
46
A
PHE
473
A
PHE
26
A
SER
477
A
SER
30
A
LYS
458
A
LYS
11
A
LYS
465
A
LYS
18
A
THR
539
A
THR
92
A
ARG
546
A
ARG
99
A
ARG
510
A
ARG
63
A
VAL
514
A
VAL
67
A
VAL
517
A
VAL
70
A
ASP
518
A
ASP
71