1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Mineev, K.S.
Bocharov, E.V.
Goncharuk, M.V.
Arseniev, A.S.
Volynsky, P.E.
Efremov, R.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
RU
Acta Naturae
2075-8251
3
90
98
22649687
Dimeric structure of the transmembrane domain of glycophorin a in lipidic and detergent environments.
2011
3160.857
Glycophorin-A
transmembrane segment (UNP residues 89-117)
2
man
polymer
PAS-2, Sialoglycoprotein alpha, MN sialoglycoprotein
no
no
EPEITLIIFGVMAGVIGTILLISYGIRRL
EPEITLIIFGVMAGVIGTILLISYGIRRL
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
GYPA, GPA
9606
Homo sapiens
562
Escherichia coli
pGEMEX
repository
Initial release
Version format compliance
Database references
1
0
2010-09-22
1
1
2011-07-13
1
2
2012-07-25
NMR assignment
BMRB
Y
RCSB
2009-10-13
REL
REL
target function
200
20
2D 1H-15N HSQC
2D 1H-13C HSQC
3D CBCA(CO)NH
3D HNCO
3D HNCA
3D HN(CO)CA
3D 1H-15N NOESY
3D 1H-13C NOESY
3D HCCH-TOCSY
3
mM
[U-100% 13C; U-100% 15N]
3
mM
180
mM
[U-2H]
0
5.5
ambient
313
K
CYANA
torsion angle dynamics
1
fewest violations
3 mM [U-100% 13C; U-100% 15N] GpA, 3 mM GpA, 180 mM [U-2H] DPC, 95% H2O/5% D2O
95% H2O/5% D2O
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
2.1
Guntert, Mumenthaler and Wuthrich
refinement
CYANA
2.1
600
Varian
UNITY
Varian Unity
GLU
70
n
1
GLU
70
A
PRO
71
n
2
PRO
71
A
GLU
72
n
3
GLU
72
A
ILE
73
n
4
ILE
73
A
THR
74
n
5
THR
74
A
LEU
75
n
6
LEU
75
A
ILE
76
n
7
ILE
76
A
ILE
77
n
8
ILE
77
A
PHE
78
n
9
PHE
78
A
GLY
79
n
10
GLY
79
A
VAL
80
n
11
VAL
80
A
MET
81
n
12
MET
81
A
ALA
82
n
13
ALA
82
A
GLY
83
n
14
GLY
83
A
VAL
84
n
15
VAL
84
A
ILE
85
n
16
ILE
85
A
GLY
86
n
17
GLY
86
A
THR
87
n
18
THR
87
A
ILE
88
n
19
ILE
88
A
LEU
89
n
20
LEU
89
A
LEU
90
n
21
LEU
90
A
ILE
91
n
22
ILE
91
A
SER
92
n
23
SER
92
A
TYR
93
n
24
TYR
93
A
GLY
94
n
25
GLY
94
A
ILE
95
n
26
ILE
95
A
ARG
96
n
27
ARG
96
A
ARG
97
n
28
ARG
97
A
LEU
98
n
29
LEU
98
A
GLU
70
n
1
GLU
70
B
PRO
71
n
2
PRO
71
B
GLU
72
n
3
GLU
72
B
ILE
73
n
4
ILE
73
B
THR
74
n
5
THR
74
B
LEU
75
n
6
LEU
75
B
ILE
76
n
7
ILE
76
B
ILE
77
n
8
ILE
77
B
PHE
78
n
9
PHE
78
B
GLY
79
n
10
GLY
79
B
VAL
80
n
11
VAL
80
B
MET
81
n
12
MET
81
B
ALA
82
n
13
ALA
82
B
GLY
83
n
14
GLY
83
B
VAL
84
n
15
VAL
84
B
ILE
85
n
16
ILE
85
B
GLY
86
n
17
GLY
86
B
THR
87
n
18
THR
87
B
ILE
88
n
19
ILE
88
B
LEU
89
n
20
LEU
89
B
LEU
90
n
21
LEU
90
B
ILE
91
n
22
ILE
91
B
SER
92
n
23
SER
92
B
TYR
93
n
24
TYR
93
B
GLY
94
n
25
GLY
94
B
ILE
95
n
26
ILE
95
B
ARG
96
n
27
ARG
96
B
ARG
97
n
28
ARG
97
B
LEU
98
n
29
LEU
98
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
GLU
72
71.65
-69.45
1
B
ARG
97
-145.76
42.95
2
A
PRO
71
-69.79
97.00
2
A
GLU
72
-164.08
-48.72
2
A
ARG
97
-155.22
43.92
2
B
GLU
72
-126.21
-51.54
2
B
ARG
97
-145.01
43.35
3
A
PRO
71
-69.83
90.01
3
A
GLU
72
-179.20
-49.28
3
A
ARG
97
-143.67
37.44
4
A
PRO
71
-69.76
78.57
4
A
ILE
95
-156.50
-48.25
4
B
ARG
97
-145.54
59.47
5
A
PRO
71
-69.75
-179.46
5
A
ILE
95
-156.57
-52.44
5
A
ARG
97
-153.10
26.70
5
B
PRO
71
-69.79
-178.24
5
B
GLU
72
69.11
-75.77
6
A
PRO
71
-69.76
78.80
6
A
ILE
95
-156.60
-49.91
6
B
ARG
97
-144.79
-67.46
7
A
ILE
95
-156.53
-52.13
7
B
PRO
71
-69.74
-171.00
7
B
ILE
95
-156.59
-45.88
8
A
PRO
71
-69.75
-171.20
8
A
ARG
97
-144.18
-69.80
8
B
PRO
71
-69.81
82.12
8
B
ARG
97
-149.43
-48.43
9
A
ILE
95
-156.58
-48.21
9
B
PRO
71
-69.76
78.89
10
A
PRO
71
-69.74
-171.06
10
A
ILE
95
-156.47
-52.63
10
A
ARG
97
-147.35
26.98
10
B
PRO
71
-69.80
-177.04
10
B
GLU
72
69.26
-75.36
10
B
ARG
97
-147.44
41.14
11
A
GLU
72
71.57
-69.26
11
A
ILE
95
-156.45
-40.50
11
B
GLU
72
71.57
-69.44
11
B
ARG
97
-145.04
41.45
12
A
ILE
95
-156.57
-52.86
13
A
GLU
72
-177.74
-51.42
13
B
GLU
72
177.52
-45.58
14
A
PRO
71
-69.74
-173.44
14
A
ARG
96
-174.47
-36.06
14
B
GLU
72
-171.31
-63.86
14
B
ARG
97
-94.20
40.42
16
A
GLU
72
-162.37
89.55
16
B
PRO
71
-69.81
78.50
17
A
ARG
96
-159.01
-38.35
18
A
PRO
71
-69.81
-170.40
18
A
ILE
95
-156.45
-51.09
18
A
ARG
97
-144.88
27.50
18
B
ARG
97
-145.19
42.74
19
A
GLU
72
-132.42
-43.35
19
A
ARG
97
-145.05
43.08
19
B
GLU
72
69.31
-75.26
19
B
ILE
95
-156.39
-50.15
20
A
GLU
72
52.03
72.13
20
A
ILE
95
-156.49
-40.42
20
A
ARG
97
-150.80
35.27
20
B
GLU
72
-149.62
-49.64
Glycophorin-A
fewest violations, model 1
Refined structure of Glycophorin A transmembrane segment dimer in DPC micelles
1
N
N
1
N
N
A
GLU
72
A
GLU
3
HELX_P
A
LEU
98
A
LEU
29
1
1
27
B
GLU
72
B
GLU
3
HELX_P
B
ARG
97
B
ARG
28
1
2
26
MEMBRANE PROTEIN
Glycophorin A, transmembrane dimer, micelles, Blood group antigen, Cell membrane, Glycoprotein, Host-virus interaction, Membrane, Sialic acid, Transmembrane, MEMBRANE PROTEIN
GLPA_HUMAN
UNP
1
89
P02724
EPEITLIIFGVMAGVIGTILLISYGIRRL
89
117
2KPE
70
98
P02724
A
1
1
29
89
117
2KPE
70
98
P02724
B
1
1
29