1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Mineev, K.S.
Bocharov, E.V.
Goncharuk, M.V.
Arseniev, A.S.
Volynsky, P.E.
Efremov, R.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
RU
Acta Naturae
2075-8251
3
90
98
22649687
Dimeric structure of the transmembrane domain of glycophorin a in lipidic and detergent environments.
2011
4240.090
Glycophorin-A
transmembrane domain (UNP residues 80-117)
2
man
polymer
PAS-2, Sialoglycoprotein alpha, MN sialoglycoprotein
no
no
RVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRL
RVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRL
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
GYPA, GPA
9606
Homo sapiens
562
Escherichia coli
pGEMEX
repository
Initial release
Version format compliance
Database references
1
0
2010-09-22
1
1
2011-07-13
1
2
2012-07-25
NMR assignment
BMRB
Y
RCSB
2009-10-13
REL
REL
target function
200
20
2D 1H-15N HSQC
2D 1H-13C HSQC
3D CBCA(CO)NH
3D HNCO
3D HNCA
3D HN(CO)CA
3D 1H-15N NOESY
3D 1H-13C NOESY
3D HCCH-TOCSY
3
mM
[U-100% 13C; U-100% 15N]
3
mM
180
mM
[U-2H]
0
5.5
ambient
313
K
CYANA
torsion angle dynamics
1
fewest violations
1mM unlabeled Glycophorin A, 1mM 13-C/15-N labeled Glycophorin A, 16mM DMPC d-54, 64 mM DHPC d-22, 95% H2O/5% D2O
95% H2O/5% D2O
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
2.1
Guntert, Mumenthaler and Wuthrich
refinement
CYANA
2.1
600
Varian
UNITY
Varian Unity
ARG
61
n
1
ARG
61
A
VAL
62
n
2
VAL
62
A
GLN
63
n
3
GLN
63
A
LEU
64
n
4
LEU
64
A
ALA
65
n
5
ALA
65
A
HIS
66
n
6
HIS
66
A
HIS
67
n
7
HIS
67
A
PHE
68
n
8
PHE
68
A
SER
69
n
9
SER
69
A
GLU
70
n
10
GLU
70
A
PRO
71
n
11
PRO
71
A
GLU
72
n
12
GLU
72
A
ILE
73
n
13
ILE
73
A
THR
74
n
14
THR
74
A
LEU
75
n
15
LEU
75
A
ILE
76
n
16
ILE
76
A
ILE
77
n
17
ILE
77
A
PHE
78
n
18
PHE
78
A
GLY
79
n
19
GLY
79
A
VAL
80
n
20
VAL
80
A
MET
81
n
21
MET
81
A
ALA
82
n
22
ALA
82
A
GLY
83
n
23
GLY
83
A
VAL
84
n
24
VAL
84
A
ILE
85
n
25
ILE
85
A
GLY
86
n
26
GLY
86
A
THR
87
n
27
THR
87
A
ILE
88
n
28
ILE
88
A
LEU
89
n
29
LEU
89
A
LEU
90
n
30
LEU
90
A
ILE
91
n
31
ILE
91
A
SER
92
n
32
SER
92
A
TYR
93
n
33
TYR
93
A
GLY
94
n
34
GLY
94
A
ILE
95
n
35
ILE
95
A
ARG
96
n
36
ARG
96
A
ARG
97
n
37
ARG
97
A
LEU
98
n
38
LEU
98
A
ARG
61
n
1
ARG
61
B
VAL
62
n
2
VAL
62
B
GLN
63
n
3
GLN
63
B
LEU
64
n
4
LEU
64
B
ALA
65
n
5
ALA
65
B
HIS
66
n
6
HIS
66
B
HIS
67
n
7
HIS
67
B
PHE
68
n
8
PHE
68
B
SER
69
n
9
SER
69
B
GLU
70
n
10
GLU
70
B
PRO
71
n
11
PRO
71
B
GLU
72
n
12
GLU
72
B
ILE
73
n
13
ILE
73
B
THR
74
n
14
THR
74
B
LEU
75
n
15
LEU
75
B
ILE
76
n
16
ILE
76
B
ILE
77
n
17
ILE
77
B
PHE
78
n
18
PHE
78
B
GLY
79
n
19
GLY
79
B
VAL
80
n
20
VAL
80
B
MET
81
n
21
MET
81
B
ALA
82
n
22
ALA
82
B
GLY
83
n
23
GLY
83
B
VAL
84
n
24
VAL
84
B
ILE
85
n
25
ILE
85
B
GLY
86
n
26
GLY
86
B
THR
87
n
27
THR
87
B
ILE
88
n
28
ILE
88
B
LEU
89
n
29
LEU
89
B
LEU
90
n
30
LEU
90
B
ILE
91
n
31
ILE
91
B
SER
92
n
32
SER
92
B
TYR
93
n
33
TYR
93
B
GLY
94
n
34
GLY
94
B
ILE
95
n
35
ILE
95
B
ARG
96
n
36
ARG
96
B
ARG
97
n
37
ARG
97
B
LEU
98
n
38
LEU
98
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ALA
65
72.16
100.29
1
A
ARG
97
76.95
-44.52
1
B
GLN
63
62.69
149.01
1
B
LEU
64
55.11
-175.97
1
B
ALA
65
72.10
33.28
1
B
HIS
66
46.66
84.48
1
B
PHE
68
-57.42
170.93
1
B
SER
69
-164.37
-167.21
1
B
GLU
72
-168.52
-64.24
2
A
ALA
65
-155.96
38.63
2
A
HIS
67
-176.07
82.32
2
A
PHE
68
-58.12
175.83
2
B
ALA
65
-164.68
32.15
2
B
HIS
66
46.50
84.48
2
B
HIS
67
-175.83
71.47
2
B
SER
69
-168.91
-167.36
2
B
GLU
70
-156.97
68.19
3
A
LEU
64
53.48
-170.18
3
A
ALA
65
72.29
31.52
3
A
HIS
67
-174.52
35.07
3
A
ARG
97
61.62
76.46
3
B
VAL
62
52.38
89.16
3
B
ALA
65
-165.06
92.29
3
B
HIS
66
-154.93
26.07
3
B
GLU
70
-173.78
65.65
4
A
GLN
63
62.67
149.13
4
A
ALA
65
71.91
59.33
4
A
HIS
66
-155.10
30.49
4
A
HIS
67
-175.59
114.97
4
A
SER
69
-168.02
-169.32
4
A
PRO
71
-69.77
99.55
4
A
GLU
72
-164.80
-49.93
4
B
VAL
62
63.64
106.17
4
B
ALA
65
-164.96
93.40
4
B
HIS
67
-179.53
35.21
4
B
PHE
68
-54.38
170.24
4
B
SER
69
-56.78
174.89
4
B
GLU
72
-174.53
-60.82
5
A
VAL
62
35.67
82.53
5
A
ALA
65
72.07
99.85
5
A
HIS
66
-154.96
28.14
5
A
SER
69
-179.62
-58.22
5
A
GLU
72
-164.11
25.10
5
B
GLN
63
62.58
149.76
5
B
LEU
64
55.31
-176.89
5
B
ALA
65
-157.60
77.60
5
B
HIS
66
-64.57
-171.15
5
B
HIS
67
-179.49
-63.10
5
B
SER
69
47.76
-164.83
5
B
GLU
70
-171.95
-62.29
5
B
PRO
71
-69.74
76.91
5
B
GLU
72
-178.77
-60.18
6
A
ALA
65
-162.79
75.08
6
A
HIS
67
-52.53
171.33
6
A
SER
69
47.92
-165.12
6
A
GLU
70
-162.42
67.56
6
B
ALA
65
72.02
101.99
6
B
HIS
67
-179.52
115.36
6
B
GLU
70
-170.69
-62.44
6
B
PRO
71
-69.73
82.26
7
A
VAL
62
-106.56
76.59
7
A
GLN
63
62.61
148.95
7
A
LEU
64
-163.28
41.38
7
A
ALA
65
-156.20
88.72
7
A
HIS
66
-154.75
32.80
7
A
HIS
67
-175.93
106.27
7
A
GLU
70
-91.53
-62.93
7
A
PRO
71
-69.76
2.32
7
A
GLU
72
-78.80
20.56
7
B
ALA
65
-155.17
33.31
7
B
HIS
67
-179.62
36.51
7
B
PRO
71
-69.72
-172.11
7
B
GLU
72
-165.13
-60.48
8
A
GLN
63
62.58
148.89
8
A
HIS
67
-51.20
103.60
8
A
GLU
70
-157.37
66.81
8
B
LEU
64
-163.73
42.99
8
B
HIS
67
-179.57
104.46
8
B
SER
69
71.54
-166.39
8
B
GLU
70
-155.37
68.08
8
B
GLU
72
-173.74
-59.03
9
A
ALA
65
72.14
101.90
9
A
HIS
66
-64.69
-178.24
9
A
HIS
67
-179.41
148.92
9
A
SER
69
47.84
-164.81
9
A
ARG
97
76.97
-44.41
9
B
ALA
65
-162.32
-79.84
9
B
HIS
66
46.28
84.39
9
B
HIS
67
-176.39
-52.09
9
B
SER
69
71.67
-165.64
10
A
LEU
64
-155.28
38.40
10
A
HIS
66
-64.81
94.12
10
A
HIS
67
-54.42
175.32
10
A
PHE
68
-61.91
-169.12
10
A
GLU
70
50.82
75.03
10
B
VAL
62
-53.97
101.96
10
B
LEU
64
55.26
-176.61
10
B
ALA
65
-154.90
-80.17
10
B
HIS
66
-163.81
41.43
10
B
HIS
67
-176.18
93.64
10
B
SER
69
-167.28
-167.76
10
B
GLU
70
-164.53
72.99
10
B
GLU
72
-165.79
-57.16
11
A
VAL
62
63.78
157.29
11
A
GLN
63
62.70
148.65
11
A
LEU
64
-158.03
41.95
11
A
ALA
65
72.15
101.52
11
A
HIS
67
-179.51
-35.11
11
A
PHE
68
-54.51
172.29
11
A
SER
69
-61.77
-167.51
11
A
GLU
72
-176.26
-57.08
11
B
LEU
64
54.88
80.14
11
B
ALA
65
-160.42
88.75
11
B
HIS
66
46.60
84.69
11
B
HIS
67
-179.59
-35.11
11
B
GLU
70
-117.58
68.79
11
B
PRO
71
-69.81
-170.94
11
B
GLU
72
-164.93
-64.19
12
A
GLN
63
62.51
149.62
12
A
ALA
65
-163.63
58.81
12
A
GLU
70
-156.73
68.61
12
A
GLU
72
-78.33
48.96
12
B
GLN
63
62.66
149.93
12
B
LEU
64
54.69
89.89
12
B
ALA
65
-158.69
39.94
12
B
SER
69
-65.68
-166.05
12
B
GLU
70
-179.36
-59.28
12
B
PRO
71
-69.78
72.51
13
A
GLN
63
62.71
149.16
13
A
ALA
65
-160.20
37.57
13
A
HIS
66
-155.33
25.61
13
A
HIS
67
179.91
35.17
13
A
GLU
70
-163.96
67.38
13
A
GLU
72
-78.25
49.26
13
A
ARG
97
76.92
-44.37
13
B
GLN
63
62.56
149.68
13
B
LEU
64
54.16
80.64
13
B
ALA
65
-162.88
59.19
13
B
HIS
66
46.54
84.43
13
B
GLU
70
-119.35
74.08
13
B
PRO
71
-69.78
78.14
13
B
ARG
97
76.88
-44.42
14
A
ALA
65
72.42
32.01
14
A
HIS
67
-174.81
54.52
14
A
ARG
97
62.97
77.08
14
B
GLN
63
62.60
149.67
14
B
LEU
64
55.02
89.72
14
B
ALA
65
-163.20
31.50
14
B
HIS
67
-179.56
40.55
14
B
ARG
97
76.80
-44.26
15
A
VAL
62
63.38
77.02
15
A
HIS
67
-176.01
77.02
15
A
SER
69
48.29
-168.08
15
A
PRO
71
-69.70
4.62
15
A
GLU
72
-158.38
59.24
15
B
LEU
64
55.11
-176.24
15
B
HIS
66
46.79
84.82
15
B
SER
69
48.17
-165.50
15
B
ARG
97
76.83
-44.50
16
A
ALA
65
72.06
102.19
16
A
HIS
67
-175.29
67.60
16
A
SER
69
-162.79
-167.47
16
A
GLU
70
-157.94
68.28
16
B
VAL
62
43.64
-165.63
16
B
GLN
63
62.59
148.55
16
B
ALA
65
-165.09
-80.20
16
B
HIS
67
-179.67
93.99
16
B
PRO
71
-69.73
78.40
17
A
VAL
62
63.73
157.32
17
A
GLN
63
62.61
149.60
17
A
ALA
65
72.21
99.66
17
A
HIS
67
-176.38
143.80
17
A
SER
69
65.82
160.02
17
B
VAL
62
37.70
42.99
17
B
ALA
65
-164.62
93.62
17
B
HIS
67
-51.31
104.75
17
B
PHE
68
-60.72
-177.10
17
B
SER
69
71.54
-165.98
17
B
GLU
72
-174.76
-58.11
18
A
HIS
66
-158.93
84.26
18
A
PRO
71
-69.81
77.52
18
A
GLU
72
-156.70
22.20
18
B
LEU
64
-163.80
39.89
18
B
SER
69
-74.86
-167.00
18
B
GLU
70
-113.20
75.60
18
B
GLU
72
-173.24
-65.72
19
A
ALA
65
71.96
31.33
19
A
HIS
67
-176.30
80.61
19
A
PHE
68
-59.16
-176.27
19
A
GLU
70
50.95
74.10
19
A
PRO
71
-69.83
77.44
19
A
GLU
72
-159.94
32.43
19
B
ALA
65
-157.89
55.99
19
B
HIS
67
-55.62
-78.78
19
B
SER
69
48.23
-167.46
20
A
ALA
65
-155.14
-78.69
20
A
HIS
66
46.85
85.37
20
A
HIS
67
-176.73
127.21
20
A
SER
69
67.40
149.81
20
A
GLU
70
-157.52
74.69
20
A
GLU
72
-78.11
49.78
20
B
ALA
65
-164.78
39.41
20
B
HIS
67
-178.63
46.36
20
B
GLU
70
-157.45
68.87
20
B
GLU
72
-179.48
-39.65
Glycophorin-A
fewest violations, model 1
Spatial structure of the dimeric transmembrane domain of glycophorin A in bicelles soluton
1
N
N
1
N
N
A
GLU
72
A
GLU
12
HELX_P
A
ARG
97
A
ARG
37
1
1
26
B
GLU
72
B
GLU
12
HELX_P
B
ARG
97
B
ARG
37
1
2
26
MEMBRANE PROTEIN
Glycophorin A, transmembrane dimer, micelles, bicelles, Blood group antigen, Cell membrane, Glycoprotein, Host-virus interaction, Membrane, Sialic acid, Transmembrane, MEMBRANE PROTEIN
GLPA_HUMAN
UNP
1
80
P02724
RVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRL
80
117
2KPF
61
98
P02724
A
1
1
38
80
117
2KPF
61
98
P02724
B
1
1
38