1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Mineev, K.S. Bocharov, E.V. Goncharuk, M.V. Arseniev, A.S. Volynsky, P.E. Efremov, R.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking RU Acta Naturae 2075-8251 3 90 98 22649687 Dimeric structure of the transmembrane domain of glycophorin a in lipidic and detergent environments. 2011 4240.090 Glycophorin-A transmembrane domain (UNP residues 80-117) 2 man polymer PAS-2, Sialoglycoprotein alpha, MN sialoglycoprotein no no RVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRL RVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRL A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample GYPA, GPA 9606 Homo sapiens 562 Escherichia coli pGEMEX repository Initial release Version format compliance Database references 1 0 2010-09-22 1 1 2011-07-13 1 2 2012-07-25 NMR assignment BMRB Y RCSB 2009-10-13 REL REL target function 200 20 2D 1H-15N HSQC 2D 1H-13C HSQC 3D CBCA(CO)NH 3D HNCO 3D HNCA 3D HN(CO)CA 3D 1H-15N NOESY 3D 1H-13C NOESY 3D HCCH-TOCSY 3 mM [U-100% 13C; U-100% 15N] 3 mM 180 mM [U-2H] 0 5.5 ambient 313 K CYANA torsion angle dynamics 1 fewest violations 1mM unlabeled Glycophorin A, 1mM 13-C/15-N labeled Glycophorin A, 16mM DMPC d-54, 64 mM DHPC d-22, 95% H2O/5% D2O 95% H2O/5% D2O Guntert, Mumenthaler and Wuthrich structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich refinement CYANA 2.1 600 Varian UNITY Varian Unity ARG 61 n 1 ARG 61 A VAL 62 n 2 VAL 62 A GLN 63 n 3 GLN 63 A LEU 64 n 4 LEU 64 A ALA 65 n 5 ALA 65 A HIS 66 n 6 HIS 66 A HIS 67 n 7 HIS 67 A PHE 68 n 8 PHE 68 A SER 69 n 9 SER 69 A GLU 70 n 10 GLU 70 A PRO 71 n 11 PRO 71 A GLU 72 n 12 GLU 72 A ILE 73 n 13 ILE 73 A THR 74 n 14 THR 74 A LEU 75 n 15 LEU 75 A ILE 76 n 16 ILE 76 A ILE 77 n 17 ILE 77 A PHE 78 n 18 PHE 78 A GLY 79 n 19 GLY 79 A VAL 80 n 20 VAL 80 A MET 81 n 21 MET 81 A ALA 82 n 22 ALA 82 A GLY 83 n 23 GLY 83 A VAL 84 n 24 VAL 84 A ILE 85 n 25 ILE 85 A GLY 86 n 26 GLY 86 A THR 87 n 27 THR 87 A ILE 88 n 28 ILE 88 A LEU 89 n 29 LEU 89 A LEU 90 n 30 LEU 90 A ILE 91 n 31 ILE 91 A SER 92 n 32 SER 92 A TYR 93 n 33 TYR 93 A GLY 94 n 34 GLY 94 A ILE 95 n 35 ILE 95 A ARG 96 n 36 ARG 96 A ARG 97 n 37 ARG 97 A LEU 98 n 38 LEU 98 A ARG 61 n 1 ARG 61 B VAL 62 n 2 VAL 62 B GLN 63 n 3 GLN 63 B LEU 64 n 4 LEU 64 B ALA 65 n 5 ALA 65 B HIS 66 n 6 HIS 66 B HIS 67 n 7 HIS 67 B PHE 68 n 8 PHE 68 B SER 69 n 9 SER 69 B GLU 70 n 10 GLU 70 B PRO 71 n 11 PRO 71 B GLU 72 n 12 GLU 72 B ILE 73 n 13 ILE 73 B THR 74 n 14 THR 74 B LEU 75 n 15 LEU 75 B ILE 76 n 16 ILE 76 B ILE 77 n 17 ILE 77 B PHE 78 n 18 PHE 78 B GLY 79 n 19 GLY 79 B VAL 80 n 20 VAL 80 B MET 81 n 21 MET 81 B ALA 82 n 22 ALA 82 B GLY 83 n 23 GLY 83 B VAL 84 n 24 VAL 84 B ILE 85 n 25 ILE 85 B GLY 86 n 26 GLY 86 B THR 87 n 27 THR 87 B ILE 88 n 28 ILE 88 B LEU 89 n 29 LEU 89 B LEU 90 n 30 LEU 90 B ILE 91 n 31 ILE 91 B SER 92 n 32 SER 92 B TYR 93 n 33 TYR 93 B GLY 94 n 34 GLY 94 B ILE 95 n 35 ILE 95 B ARG 96 n 36 ARG 96 B ARG 97 n 37 ARG 97 B LEU 98 n 38 LEU 98 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ALA 65 72.16 100.29 1 A ARG 97 76.95 -44.52 1 B GLN 63 62.69 149.01 1 B LEU 64 55.11 -175.97 1 B ALA 65 72.10 33.28 1 B HIS 66 46.66 84.48 1 B PHE 68 -57.42 170.93 1 B SER 69 -164.37 -167.21 1 B GLU 72 -168.52 -64.24 2 A ALA 65 -155.96 38.63 2 A HIS 67 -176.07 82.32 2 A PHE 68 -58.12 175.83 2 B ALA 65 -164.68 32.15 2 B HIS 66 46.50 84.48 2 B HIS 67 -175.83 71.47 2 B SER 69 -168.91 -167.36 2 B GLU 70 -156.97 68.19 3 A LEU 64 53.48 -170.18 3 A ALA 65 72.29 31.52 3 A HIS 67 -174.52 35.07 3 A ARG 97 61.62 76.46 3 B VAL 62 52.38 89.16 3 B ALA 65 -165.06 92.29 3 B HIS 66 -154.93 26.07 3 B GLU 70 -173.78 65.65 4 A GLN 63 62.67 149.13 4 A ALA 65 71.91 59.33 4 A HIS 66 -155.10 30.49 4 A HIS 67 -175.59 114.97 4 A SER 69 -168.02 -169.32 4 A PRO 71 -69.77 99.55 4 A GLU 72 -164.80 -49.93 4 B VAL 62 63.64 106.17 4 B ALA 65 -164.96 93.40 4 B HIS 67 -179.53 35.21 4 B PHE 68 -54.38 170.24 4 B SER 69 -56.78 174.89 4 B GLU 72 -174.53 -60.82 5 A VAL 62 35.67 82.53 5 A ALA 65 72.07 99.85 5 A HIS 66 -154.96 28.14 5 A SER 69 -179.62 -58.22 5 A GLU 72 -164.11 25.10 5 B GLN 63 62.58 149.76 5 B LEU 64 55.31 -176.89 5 B ALA 65 -157.60 77.60 5 B HIS 66 -64.57 -171.15 5 B HIS 67 -179.49 -63.10 5 B SER 69 47.76 -164.83 5 B GLU 70 -171.95 -62.29 5 B PRO 71 -69.74 76.91 5 B GLU 72 -178.77 -60.18 6 A ALA 65 -162.79 75.08 6 A HIS 67 -52.53 171.33 6 A SER 69 47.92 -165.12 6 A GLU 70 -162.42 67.56 6 B ALA 65 72.02 101.99 6 B HIS 67 -179.52 115.36 6 B GLU 70 -170.69 -62.44 6 B PRO 71 -69.73 82.26 7 A VAL 62 -106.56 76.59 7 A GLN 63 62.61 148.95 7 A LEU 64 -163.28 41.38 7 A ALA 65 -156.20 88.72 7 A HIS 66 -154.75 32.80 7 A HIS 67 -175.93 106.27 7 A GLU 70 -91.53 -62.93 7 A PRO 71 -69.76 2.32 7 A GLU 72 -78.80 20.56 7 B ALA 65 -155.17 33.31 7 B HIS 67 -179.62 36.51 7 B PRO 71 -69.72 -172.11 7 B GLU 72 -165.13 -60.48 8 A GLN 63 62.58 148.89 8 A HIS 67 -51.20 103.60 8 A GLU 70 -157.37 66.81 8 B LEU 64 -163.73 42.99 8 B HIS 67 -179.57 104.46 8 B SER 69 71.54 -166.39 8 B GLU 70 -155.37 68.08 8 B GLU 72 -173.74 -59.03 9 A ALA 65 72.14 101.90 9 A HIS 66 -64.69 -178.24 9 A HIS 67 -179.41 148.92 9 A SER 69 47.84 -164.81 9 A ARG 97 76.97 -44.41 9 B ALA 65 -162.32 -79.84 9 B HIS 66 46.28 84.39 9 B HIS 67 -176.39 -52.09 9 B SER 69 71.67 -165.64 10 A LEU 64 -155.28 38.40 10 A HIS 66 -64.81 94.12 10 A HIS 67 -54.42 175.32 10 A PHE 68 -61.91 -169.12 10 A GLU 70 50.82 75.03 10 B VAL 62 -53.97 101.96 10 B LEU 64 55.26 -176.61 10 B ALA 65 -154.90 -80.17 10 B HIS 66 -163.81 41.43 10 B HIS 67 -176.18 93.64 10 B SER 69 -167.28 -167.76 10 B GLU 70 -164.53 72.99 10 B GLU 72 -165.79 -57.16 11 A VAL 62 63.78 157.29 11 A GLN 63 62.70 148.65 11 A LEU 64 -158.03 41.95 11 A ALA 65 72.15 101.52 11 A HIS 67 -179.51 -35.11 11 A PHE 68 -54.51 172.29 11 A SER 69 -61.77 -167.51 11 A GLU 72 -176.26 -57.08 11 B LEU 64 54.88 80.14 11 B ALA 65 -160.42 88.75 11 B HIS 66 46.60 84.69 11 B HIS 67 -179.59 -35.11 11 B GLU 70 -117.58 68.79 11 B PRO 71 -69.81 -170.94 11 B GLU 72 -164.93 -64.19 12 A GLN 63 62.51 149.62 12 A ALA 65 -163.63 58.81 12 A GLU 70 -156.73 68.61 12 A GLU 72 -78.33 48.96 12 B GLN 63 62.66 149.93 12 B LEU 64 54.69 89.89 12 B ALA 65 -158.69 39.94 12 B SER 69 -65.68 -166.05 12 B GLU 70 -179.36 -59.28 12 B PRO 71 -69.78 72.51 13 A GLN 63 62.71 149.16 13 A ALA 65 -160.20 37.57 13 A HIS 66 -155.33 25.61 13 A HIS 67 179.91 35.17 13 A GLU 70 -163.96 67.38 13 A GLU 72 -78.25 49.26 13 A ARG 97 76.92 -44.37 13 B GLN 63 62.56 149.68 13 B LEU 64 54.16 80.64 13 B ALA 65 -162.88 59.19 13 B HIS 66 46.54 84.43 13 B GLU 70 -119.35 74.08 13 B PRO 71 -69.78 78.14 13 B ARG 97 76.88 -44.42 14 A ALA 65 72.42 32.01 14 A HIS 67 -174.81 54.52 14 A ARG 97 62.97 77.08 14 B GLN 63 62.60 149.67 14 B LEU 64 55.02 89.72 14 B ALA 65 -163.20 31.50 14 B HIS 67 -179.56 40.55 14 B ARG 97 76.80 -44.26 15 A VAL 62 63.38 77.02 15 A HIS 67 -176.01 77.02 15 A SER 69 48.29 -168.08 15 A PRO 71 -69.70 4.62 15 A GLU 72 -158.38 59.24 15 B LEU 64 55.11 -176.24 15 B HIS 66 46.79 84.82 15 B SER 69 48.17 -165.50 15 B ARG 97 76.83 -44.50 16 A ALA 65 72.06 102.19 16 A HIS 67 -175.29 67.60 16 A SER 69 -162.79 -167.47 16 A GLU 70 -157.94 68.28 16 B VAL 62 43.64 -165.63 16 B GLN 63 62.59 148.55 16 B ALA 65 -165.09 -80.20 16 B HIS 67 -179.67 93.99 16 B PRO 71 -69.73 78.40 17 A VAL 62 63.73 157.32 17 A GLN 63 62.61 149.60 17 A ALA 65 72.21 99.66 17 A HIS 67 -176.38 143.80 17 A SER 69 65.82 160.02 17 B VAL 62 37.70 42.99 17 B ALA 65 -164.62 93.62 17 B HIS 67 -51.31 104.75 17 B PHE 68 -60.72 -177.10 17 B SER 69 71.54 -165.98 17 B GLU 72 -174.76 -58.11 18 A HIS 66 -158.93 84.26 18 A PRO 71 -69.81 77.52 18 A GLU 72 -156.70 22.20 18 B LEU 64 -163.80 39.89 18 B SER 69 -74.86 -167.00 18 B GLU 70 -113.20 75.60 18 B GLU 72 -173.24 -65.72 19 A ALA 65 71.96 31.33 19 A HIS 67 -176.30 80.61 19 A PHE 68 -59.16 -176.27 19 A GLU 70 50.95 74.10 19 A PRO 71 -69.83 77.44 19 A GLU 72 -159.94 32.43 19 B ALA 65 -157.89 55.99 19 B HIS 67 -55.62 -78.78 19 B SER 69 48.23 -167.46 20 A ALA 65 -155.14 -78.69 20 A HIS 66 46.85 85.37 20 A HIS 67 -176.73 127.21 20 A SER 69 67.40 149.81 20 A GLU 70 -157.52 74.69 20 A GLU 72 -78.11 49.78 20 B ALA 65 -164.78 39.41 20 B HIS 67 -178.63 46.36 20 B GLU 70 -157.45 68.87 20 B GLU 72 -179.48 -39.65 Glycophorin-A fewest violations, model 1 Spatial structure of the dimeric transmembrane domain of glycophorin A in bicelles soluton 1 N N 1 N N A GLU 72 A GLU 12 HELX_P A ARG 97 A ARG 37 1 1 26 B GLU 72 B GLU 12 HELX_P B ARG 97 B ARG 37 1 2 26 MEMBRANE PROTEIN Glycophorin A, transmembrane dimer, micelles, bicelles, Blood group antigen, Cell membrane, Glycoprotein, Host-virus interaction, Membrane, Sialic acid, Transmembrane, MEMBRANE PROTEIN GLPA_HUMAN UNP 1 80 P02724 RVQLAHHFSEPEITLIIFGVMAGVIGTILLISYGIRRL 80 117 2KPF 61 98 P02724 A 1 1 38 80 117 2KPF 61 98 P02724 B 1 1 38