1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Ramelot, T.A.
Cort, J.R.
Garcia, M.
Yee, A.
Arrowmith, C.H.
Montelione, G.T.
Kennedy, M.A.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
To be Published
0353
Solution NMR structure of Streptomyces coelicolor SCO3027 modeled with Zn+2 bound, Northeast Structural Genomics Consortium Target RR58
10.2210/pdb2kpi/pdb
pdb_00002kpi
6048.983
Uncharacterized protein SCO3027
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
MPLEAGLLEILACPACHAPLEERDAELICTGQDCGLAYPVRDGIPVLLVDEARRPE
MPLEAGLLEILACPACHAPLEERDAELICTGQDCGLAYPVRDGIPVLLVDEARRPE
A
RR58
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
SCD84.08c, SCE34.08c, SCO3027
1902
Streptomyces coelicolor
469008
Escherichia coli
BL21(DE3) gold pMGK
p15Tv
C4 zinc-binding protein
Northeast Structural Genomics Consortium
NESG
PSI, Protein Structure Initiative
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
database_2
pdbx_database_status
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Other
Database references
Derived calculations
Other
1
0
2010-02-02
1
1
2011-07-13
1
2
2020-02-26
1
3
2023-06-14
_pdbx_database_status.status_code_cs
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BMRB
Y
RCSB
2009-10-15
REL
REL
REL
REL
ZN
ZINC ION
structures with the least restraint violations
30
20
2D 1H-15N HSQC
2D 1H-13C HSQC
3D 1H-15N NOESY
3D 1H-13C NOESY aliph
3D HNCO
3D CBCA(CO)NH
3D HNCACB
3D HBHA(CO)NH
3D HCCH-TOCSY
3D HCCH-TOCSY
4D HCCH NOESY
3D C(CO)NH
3D H(CCO)NH
2D 1H-13C HSQC
10
mM
300
mM
10
mM
10
mM
0.01
%
0.9
mM
[U-100% 13C; U-100% 15N]
10
mM
300
mM
10
mM
10
mM
0.01
%
0.9
mM
[U-100% 13C; U-100% 15N]
10
mM
300
mM
10
mM
10
mM
0.01
%
0.9
mM
[U-7% 13C; U-100% 15N]
200
7.0
ambient
293
K
xplor with hydrogen bond potential refinement
simulated annealing
1
closest to the average
10 mM Tris, 300 mM sodium chloride, 10 mM zinc chloride, 10 mM DTT, 0.01 % sodium azide, 0.9 mM [U-100% 13C; U-100% 15N] protein, 95% H2O/5% D2O
95% H2O/5% D2O
10 mM Tris, 300 mM sodium chloride, 10 mM zinc chloride, 10 mM DTT, 0.01 % sodium azide, 0.9 mM [U-100% 13C; U-100% 15N] protein, 100% D2O
100% D2O
10 mM Tris, 300 mM sodium chloride, 10 mM zinc chloride, 10 mM DTT, 0.01 % sodium azide, 0.9 mM [U-7% 13C; U-100% 15N] protein, 95% H2O/5% D2O
95% H2O/5% D2O
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
2008
Varian
collection
VNMR
6.1C
Bruker Biospin
collection
TopSpin
2.1.4
Huang, Tejero, Powers and Montelione
data analysis
AutoStructure
2.2.1
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
2.20
Goddard
data analysis
Sparky
3.113
Bhattacharya and Montelione
structure validation
PSVS
1.3
Zimmerman, Moseley, Kulikowski and Montelione
chemical shift assignment
AutoAssign
2.3.0
(PDBStat) R. Tejero, G.T. Montelione
data analysis
PdbStat
5.0
Brunger, Adams, Clore, Gros, Nilges and Read
refinement
CNS
1.2
600
Varian
INOVA
Varian INOVA
850
Bruker
AVANCE III
Bruker AvanceIII
500
Varian
INOVA
Varian INOVA
ZN
150
2
ZN
ZN
150
A
MET
1
n
1
MET
1
A
PRO
2
n
2
PRO
2
A
LEU
3
n
3
LEU
3
A
GLU
4
n
4
GLU
4
A
ALA
5
n
5
ALA
5
A
GLY
6
n
6
GLY
6
A
LEU
7
n
7
LEU
7
A
LEU
8
n
8
LEU
8
A
GLU
9
n
9
GLU
9
A
ILE
10
n
10
ILE
10
A
LEU
11
n
11
LEU
11
A
ALA
12
n
12
ALA
12
A
CYS
13
n
13
CYS
13
A
PRO
14
n
14
PRO
14
A
ALA
15
n
15
ALA
15
A
CYS
16
n
16
CYS
16
A
HIS
17
n
17
HIS
17
A
ALA
18
n
18
ALA
18
A
PRO
19
n
19
PRO
19
A
LEU
20
n
20
LEU
20
A
GLU
21
n
21
GLU
21
A
GLU
22
n
22
GLU
22
A
ARG
23
n
23
ARG
23
A
ASP
24
n
24
ASP
24
A
ALA
25
n
25
ALA
25
A
GLU
26
n
26
GLU
26
A
LEU
27
n
27
LEU
27
A
ILE
28
n
28
ILE
28
A
CYS
29
n
29
CYS
29
A
THR
30
n
30
THR
30
A
GLY
31
n
31
GLY
31
A
GLN
32
n
32
GLN
32
A
ASP
33
n
33
ASP
33
A
CYS
34
n
34
CYS
34
A
GLY
35
n
35
GLY
35
A
LEU
36
n
36
LEU
36
A
ALA
37
n
37
ALA
37
A
TYR
38
n
38
TYR
38
A
PRO
39
n
39
PRO
39
A
VAL
40
n
40
VAL
40
A
ARG
41
n
41
ARG
41
A
ASP
42
n
42
ASP
42
A
GLY
43
n
43
GLY
43
A
ILE
44
n
44
ILE
44
A
PRO
45
n
45
PRO
45
A
VAL
46
n
46
VAL
46
A
LEU
47
n
47
LEU
47
A
LEU
48
n
48
LEU
48
A
VAL
49
n
49
VAL
49
A
ASP
50
n
50
ASP
50
A
GLU
51
n
51
GLU
51
A
ALA
52
n
52
ALA
52
A
ARG
53
n
53
ARG
53
A
ARG
54
n
54
ARG
54
A
PRO
55
n
55
PRO
55
A
GLU
56
n
56
GLU
56
A
author_defined_assembly
1
monomeric
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
150
B
ZN
ZN
1_555
A
CYS
16
A
SG
CYS
16
1_555
110.0
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
150
B
ZN
ZN
1_555
A
CYS
29
A
SG
CYS
29
1_555
109.5
A
CYS
16
A
SG
CYS
16
1_555
A
ZN
150
B
ZN
ZN
1_555
A
CYS
29
A
SG
CYS
29
1_555
109.2
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
150
B
ZN
ZN
1_555
A
CYS
34
A
SG
CYS
34
1_555
108.7
A
CYS
16
A
SG
CYS
16
1_555
A
ZN
150
B
ZN
ZN
1_555
A
CYS
34
A
SG
CYS
34
1_555
109.4
A
CYS
29
A
SG
CYS
29
1_555
A
ZN
150
B
ZN
ZN
1_555
A
CYS
34
A
SG
CYS
34
1_555
110.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
21
A
N
GLU
21
A
O
ILE
28
A
O
ILE
28
A
N
LEU
27
A
N
LEU
27
A
O
TYR
38
A
O
TYR
38
A
N
ARG
41
A
N
ARG
41
A
O
ILE
44
A
O
ILE
44
1
A
ALA
5
-122.13
-65.88
1
A
LEU
7
55.01
111.96
1
A
HIS
17
-37.89
112.43
1
A
ASP
24
50.80
-112.93
2
A
GLU
9
49.07
99.05
2
A
ILE
10
54.63
111.21
2
A
ALA
15
45.27
15.31
2
A
CYS
16
-172.86
123.40
2
A
LEU
47
-77.24
45.58
3
A
GLU
4
-84.83
-88.10
3
A
ALA
5
57.07
156.13
3
A
ALA
15
79.87
-36.94
3
A
CYS
16
-122.70
-169.09
3
A
ASP
24
49.74
-113.68
3
A
CYS
34
-129.46
-145.09
3
A
ARG
54
-49.21
167.51
4
A
LEU
3
59.01
123.67
4
A
LEU
7
50.13
105.43
4
A
ILE
10
-109.81
-164.03
4
A
ALA
15
69.41
-69.45
4
A
HIS
17
52.63
88.82
4
A
ASP
24
40.20
-116.80
5
A
LEU
3
-157.14
-35.34
5
A
LEU
8
-83.28
-76.65
5
A
GLU
9
43.87
96.39
5
A
ALA
15
66.75
-61.17
5
A
ASP
24
52.82
-96.53
5
A
CYS
34
-142.32
-150.57
6
A
PRO
2
-60.02
5.61
6
A
LEU
3
-72.73
-79.79
6
A
GLU
4
55.08
-82.41
6
A
LEU
7
-74.92
-78.26
6
A
GLU
9
-55.32
-173.07
6
A
ALA
15
76.41
-35.76
6
A
CYS
16
-124.95
-166.27
6
A
ALA
18
164.61
158.76
6
A
PRO
19
-56.97
177.41
6
A
ASP
24
54.00
-94.62
6
A
LEU
36
41.20
111.57
6
A
ASP
42
56.78
5.66
7
A
GLU
4
-142.19
-28.69
7
A
LEU
7
76.86
-59.82
7
A
LEU
8
44.73
-107.55
7
A
ALA
15
68.92
-53.56
7
A
ALA
18
173.60
155.39
7
A
ASP
24
53.62
-84.81
7
A
ALA
25
-140.55
27.27
7
A
CYS
34
-141.01
-112.85
7
A
LEU
47
-93.71
35.28
8
A
GLU
4
40.77
-123.74
8
A
ALA
5
-114.47
70.66
8
A
LEU
7
56.31
116.34
8
A
LEU
8
38.52
-160.59
8
A
GLU
9
42.82
79.04
8
A
PRO
14
-68.25
33.00
8
A
ALA
15
-153.52
-75.86
8
A
HIS
17
54.59
12.00
8
A
ASP
24
52.47
-91.29
8
A
CYS
34
-94.03
-70.28
9
A
GLU
4
47.67
78.88
9
A
PRO
19
-49.36
163.25
9
A
ASP
24
52.07
-109.61
9
A
CYS
34
-95.40
-69.22
10
A
LEU
7
54.09
3.95
10
A
PRO
14
-80.23
-86.15
10
A
CYS
16
-93.11
55.03
10
A
HIS
17
-41.24
108.94
10
A
LEU
36
-53.81
178.46
11
A
GLU
4
51.95
103.80
11
A
LEU
8
41.35
91.65
11
A
PRO
14
-68.84
-79.16
11
A
ALA
25
37.00
35.07
11
A
CYS
34
-102.18
-117.73
12
A
ALA
5
-170.47
131.04
12
A
ALA
15
70.45
-12.59
12
A
HIS
17
-140.95
24.97
12
A
ASP
24
46.50
-111.60
12
A
CYS
34
-89.35
-79.24
12
A
LEU
36
24.74
111.04
13
A
LEU
7
56.06
111.09
13
A
LEU
8
46.00
99.71
13
A
ALA
18
176.92
158.12
13
A
ASP
24
-38.79
103.53
13
A
LEU
47
-81.79
42.49
14
A
PRO
2
-69.38
-165.40
14
A
GLU
4
-163.52
40.58
14
A
LEU
7
58.67
145.94
14
A
ALA
15
-148.52
-47.22
14
A
HIS
17
69.90
-26.65
14
A
ALA
18
-48.90
-178.71
14
A
ASP
24
51.17
-110.76
14
A
CYS
34
-78.11
-80.56
14
A
LEU
36
41.98
121.21
14
A
LEU
47
-91.78
31.65
15
A
PRO
14
-50.26
-9.64
15
A
ALA
15
-100.95
-72.98
15
A
HIS
17
55.07
88.68
15
A
ASP
24
53.98
-87.40
16
A
PRO
2
-14.65
-111.17
16
A
GLU
9
-62.42
97.71
16
A
PRO
14
-75.23
-83.84
16
A
ASP
24
53.88
-90.11
16
A
ALA
25
-141.43
28.71
16
A
PRO
55
-38.43
136.31
17
A
GLU
4
44.00
-127.46
17
A
GLU
9
51.14
99.24
17
A
ASP
24
-22.28
78.79
17
A
ALA
25
155.38
-30.89
17
A
GLU
26
-178.08
-174.15
17
A
CYS
34
-81.25
-114.71
17
A
LEU
36
-9.43
125.59
17
A
LEU
47
-85.27
39.88
18
A
LEU
3
-170.51
114.65
18
A
PRO
14
-70.62
-80.13
18
A
ALA
18
164.82
156.78
18
A
LEU
36
74.45
160.60
19
A
GLU
4
-173.19
140.80
19
A
ALA
5
-63.02
88.43
19
A
GLU
9
59.55
106.93
19
A
ALA
15
-132.00
-53.25
19
A
HIS
17
63.31
-1.44
19
A
ASP
24
17.17
-85.80
19
A
ALA
25
-141.60
29.82
19
A
LEU
47
-80.86
38.30
20
A
LEU
3
54.94
-176.13
20
A
GLU
4
55.09
163.05
20
A
ALA
5
-169.05
-12.67
20
A
GLU
9
-84.49
-108.40
20
A
PRO
14
-67.81
-79.24
C4 zinc-binding protein
Solution NMR structure of Streptomyces coelicolor SCO3027 modeled with Zn+2 bound, Northeast Structural Genomics Consortium Target RR58
1
N
N
2
N
N
metalc
2.235
A
CYS
13
A
SG
CYS
13
1_555
A
ZN
150
B
ZN
ZN
1_555
metalc
2.235
A
CYS
16
A
SG
CYS
16
1_555
A
ZN
150
B
ZN
ZN
1_555
metalc
2.237
A
CYS
29
A
SG
CYS
29
1_555
A
ZN
150
B
ZN
ZN
1_555
metalc
2.236
A
CYS
34
A
SG
CYS
34
1_555
A
ZN
150
B
ZN
ZN
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
zinc finger, PSI-2, NESG, all beta, Structural Genomics, Protein Structure Initiative, Northeast Structural Genomics Consortium, UNKNOWN FUNCTION
Q9KZL7_STRCO
UNP
1
1
Q9KZL7
MPLEAGLLEILACPACHAPLEERDAELICTGQDCGLAYPVRDGIPVLLVDEARRPE
1
56
2KPI
1
56
Q9KZL7
A
1
1
56
4
anti-parallel
anti-parallel
anti-parallel
A
LEU
20
A
LEU
20
A
ARG
23
A
ARG
23
A
GLU
26
A
GLU
26
A
CYS
29
A
CYS
29
A
ALA
37
A
ALA
37
A
ARG
41
A
ARG
41
A
ILE
44
A
ILE
44
A
PRO
45
A
PRO
45
BINDING SITE FOR RESIDUE ZN A 150
A
ZN
150
Software
4
A
CYS
13
A
CYS
13
4
1_555
A
CYS
16
A
CYS
16
4
1_555
A
CYS
29
A
CYS
29
4
1_555
A
CYS
34
A
CYS
34
4
1_555