1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Neuhaus, D.
Eustermann, S.
Brockmann, C.
Yang, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H13 N5 O4
267.241
ADENOSINE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C5 H10 O5
150.130
alpha-D-ribofuranose
D-saccharide, alpha linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Nat.Struct.Mol.Biol.
1545-9993
17
241
243
10.1038/nsmb.1747
20098424
Solution structures of the two PBZ domains from human APLF and their interaction with poly(ADP-ribose).
2010
10053.062
Aprataxin and PNK-like factor
4.2.99.18
sequence database residues 363-451, PBZ-type 2 domain
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
267.241
ADENOSINE
1
syn
non-polymer
150.130
alpha-D-ribofuranose
1
man
non-polymer
Apurinic-apyrimidinic endonuclease APLF, PNK and APTX-like FHA domain-containing protein, XRCC1-interacting protein 1
no
no
GPLGSGSEGNKVKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDDRPECPYGPSCYRKNPQHKIEYRHNT
LPVRNVLDE
GPLGSGSEGNKVKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDDRPECPYGPSCYRKNPQHKIEYRHNT
LPVRNVLDE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
APLF, C2orf13, PALF, XIP1
9606
Homo sapiens
562
Escherichia coli
pGEX-6P-1
atom_site
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Atomic model
Data collection
Database references
Derived calculations
Structure summary
1
0
2010-01-19
1
1
2011-07-13
2
0
2020-07-29
_atom_site.auth_atom_id
_atom_site.label_atom_id
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_pdbx_nmr_spectrometer.model
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn_type.id
_struct_ref_seq_dif.details
DRibfa
a-D-ribofuranose
a-D-Ribf
Rib
chemical shifts for this system
FIRST PBZ DOMAIN OF HUMAN APLF PROTEIN
SECOND PBZ DOMAIN OF HUMAN APLF PROTEIN
FIRST PBZ DOMAIN OF HUMAN APLF PROTEIN IN COMPLEX WITH RIBOFURANOSYLADENOSINE
HELIX
DETERMINATION METHOD: AUTHOR
BMRB
Y
RCSB
2009-11-04
REL
REL
ZN
ZINC ION
ADN
ADENOSINE
RIB
alpha-D-ribofuranose
RESIDUES 363-404 ARE NOT SHOWN IN THE COORDINATES BECAUSE STRUCTURE CALCULATIONS WERE CARRIED OUT ON RESIDUES 405-451 ONLY.
8
0
5
5
The author states that NMR was carried out on a single fragment (363-451)
containing both fingers F1 and F2 of APLF, but the structure calculations
were carried out separately for each finger. This co-ordinate file includes
residues 405-451 and contains F2 as well as the unstructured regions on
either side.
structures with the lowest energy
50
10
9.6
0.71
XPLOR-NIH
2D 1H-15N HSQC
2D 1H-13C HSQC full-width
2D 1H-1H NOESY
2D 1H-1H NOESY filtered
3D 1H-13C NOESY
2D 1H-1H TOCSY
2D 1H-13C HSQC full-width
2D 1H-1H NOESY
2D 1H-1H NOESY filtered
3D 1H-13C NOESY
2D 1H-1H TOCSY
20
mM
200
mM
100
uM
2
mM
[U-2H]
0.8
mM
[U-98% 13C; U-98% 15N]
2
mM
20
mM
200
mM
100
uM
2
mM
[U-2H]
0.8
mM
[U-98% 13C; U-98% 15N]
2
mM
0.4
6.0
ambient
278
K
0.4
6.0
ambient
286
K
0.4
6.0
ambient
300
K
simulated annealing
1
lowest energy
20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.8 mM [U-98% 13C; U-98% 15N] APLF_363-451, 2 mM RFA, 95% H2O/5% D2O
95% H2O/5% D2O
20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.8 mM [U-98% 13C; U-98% 15N] APLF_363-451, 2 mM RFA, 100% D2O
100% D2O
Schwieters, Kuszewski, Tjandra and Clore
structure solution
XPLOR-NIH
Schwieters, Kuszewski, Tjandra and Clore
refinement
XPLOR-NIH
800
Bruker
AVANCE
Bruker Avance
600
Bruker
DMX
Bruker DMX
500
Bruker
DRX
Bruker DRX
ZN
1001
2
ZN
ZN
1001
A
ADN
1002
3
ADN
ADN
1002
A
RIB
1003
4
RIB
RIB
1003
A
n
1
363
A
n
2
364
A
n
3
365
A
n
4
366
A
n
5
367
A
n
6
368
A
n
7
369
A
n
8
370
A
n
9
371
A
n
10
372
A
n
11
373
A
n
12
374
A
n
13
375
A
n
14
376
A
n
15
377
A
n
16
378
A
n
17
379
A
n
18
380
A
n
19
381
A
n
20
382
A
n
21
383
A
n
22
384
A
n
23
385
A
n
24
386
A
n
25
387
A
n
26
388
A
n
27
389
A
n
28
390
A
n
29
391
A
n
30
392
A
n
31
393
A
n
32
394
A
n
33
395
A
n
34
396
A
n
35
397
A
n
36
398
A
n
37
399
A
n
38
400
A
n
39
401
A
n
40
402
A
n
41
403
A
n
42
404
A
GLY
405
n
43
GLY
405
A
GLY
406
n
44
GLY
406
A
VAL
407
n
45
VAL
407
A
GLN
408
n
46
GLN
408
A
ILE
409
n
47
ILE
409
A
VAL
410
n
48
VAL
410
A
GLY
411
n
49
GLY
411
A
GLN
412
n
50
GLN
412
A
ASP
413
n
51
ASP
413
A
GLU
414
n
52
GLU
414
A
THR
415
n
53
THR
415
A
ASP
416
n
54
ASP
416
A
ASP
417
n
55
ASP
417
A
ARG
418
n
56
ARG
418
A
PRO
419
n
57
PRO
419
A
GLU
420
n
58
GLU
420
A
CYS
421
n
59
CYS
421
A
PRO
422
n
60
PRO
422
A
TYR
423
n
61
TYR
423
A
GLY
424
n
62
GLY
424
A
PRO
425
n
63
PRO
425
A
SER
426
n
64
SER
426
A
CYS
427
n
65
CYS
427
A
TYR
428
n
66
TYR
428
A
ARG
429
n
67
ARG
429
A
LYS
430
n
68
LYS
430
A
ASN
431
n
69
ASN
431
A
PRO
432
n
70
PRO
432
A
GLN
433
n
71
GLN
433
A
HIS
434
n
72
HIS
434
A
LYS
435
n
73
LYS
435
A
ILE
436
n
74
ILE
436
A
GLU
437
n
75
GLU
437
A
TYR
438
n
76
TYR
438
A
ARG
439
n
77
ARG
439
A
HIS
440
n
78
HIS
440
A
ASN
441
n
79
ASN
441
A
THR
442
n
80
THR
442
A
LEU
443
n
81
LEU
443
A
PRO
444
n
82
PRO
444
A
VAL
445
n
83
VAL
445
A
ARG
446
n
84
ARG
446
A
ASN
447
n
85
ASN
447
A
VAL
448
n
86
VAL
448
A
LEU
449
n
87
LEU
449
A
ASP
450
n
88
ASP
450
A
GLU
451
n
89
GLU
451
A
author_defined_assembly
1
monomeric
A
CYS
421
A
SG
CYS
59
1_555
A
ZN
1001
B
ZN
ZN
1_555
A
CYS
427
A
SG
CYS
65
1_555
116.0
A
CYS
421
A
SG
CYS
59
1_555
A
ZN
1001
B
ZN
ZN
1_555
A
HIS
434
A
NE2
HIS
72
1_555
103.8
A
CYS
427
A
SG
CYS
65
1_555
A
ZN
1001
B
ZN
ZN
1_555
A
HIS
434
A
NE2
HIS
72
1_555
110.2
A
CYS
421
A
SG
CYS
59
1_555
A
ZN
1001
B
ZN
ZN
1_555
A
HIS
440
A
NE2
HIS
78
1_555
102.3
A
CYS
427
A
SG
CYS
65
1_555
A
ZN
1001
B
ZN
ZN
1_555
A
HIS
440
A
NE2
HIS
78
1_555
110.1
A
HIS
434
A
NE2
HIS
72
1_555
A
ZN
1001
B
ZN
ZN
1_555
A
HIS
440
A
NE2
HIS
78
1_555
114.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
363
A
GLY
1
1
Y
1
A
PRO
364
A
PRO
2
1
Y
1
A
LEU
365
A
LEU
3
1
Y
1
A
GLY
366
A
GLY
4
1
Y
1
A
SER
367
A
SER
5
1
Y
1
A
GLY
368
A
GLY
6
1
Y
1
A
SER
369
A
SER
7
1
Y
1
A
GLU
370
A
GLU
8
1
Y
1
A
GLY
371
A
GLY
9
1
Y
1
A
ASN
372
A
ASN
10
1
Y
1
A
LYS
373
A
LYS
11
1
Y
1
A
VAL
374
A
VAL
12
1
Y
1
A
LYS
375
A
LYS
13
1
Y
1
A
ARG
376
A
ARG
14
1
Y
1
A
THR
377
A
THR
15
1
Y
1
A
SER
378
A
SER
16
1
Y
1
A
CYS
379
A
CYS
17
1
Y
1
A
MET
380
A
MET
18
1
Y
1
A
TYR
381
A
TYR
19
1
Y
1
A
GLY
382
A
GLY
20
1
Y
1
A
ALA
383
A
ALA
21
1
Y
1
A
ASN
384
A
ASN
22
1
Y
1
A
CYS
385
A
CYS
23
1
Y
1
A
TYR
386
A
TYR
24
1
Y
1
A
ARG
387
A
ARG
25
1
Y
1
A
LYS
388
A
LYS
26
1
Y
1
A
ASN
389
A
ASN
27
1
Y
1
A
PRO
390
A
PRO
28
1
Y
1
A
VAL
391
A
VAL
29
1
Y
1
A
HIS
392
A
HIS
30
1
Y
1
A
PHE
393
A
PHE
31
1
Y
1
A
GLN
394
A
GLN
32
1
Y
1
A
HIS
395
A
HIS
33
1
Y
1
A
PHE
396
A
PHE
34
1
Y
1
A
SER
397
A
SER
35
1
Y
1
A
HIS
398
A
HIS
36
1
Y
1
A
PRO
399
A
PRO
37
1
Y
1
A
GLY
400
A
GLY
38
1
Y
1
A
ASP
401
A
ASP
39
1
Y
1
A
SER
402
A
SER
40
1
Y
1
A
ASP
403
A
ASP
41
1
Y
1
A
TYR
404
A
TYR
42
1
Y
2
A
GLY
363
A
GLY
1
1
Y
2
A
PRO
364
A
PRO
2
1
Y
2
A
LEU
365
A
LEU
3
1
Y
2
A
GLY
366
A
GLY
4
1
Y
2
A
SER
367
A
SER
5
1
Y
2
A
GLY
368
A
GLY
6
1
Y
2
A
SER
369
A
SER
7
1
Y
2
A
GLU
370
A
GLU
8
1
Y
2
A
GLY
371
A
GLY
9
1
Y
2
A
ASN
372
A
ASN
10
1
Y
2
A
LYS
373
A
LYS
11
1
Y
2
A
VAL
374
A
VAL
12
1
Y
2
A
LYS
375
A
LYS
13
1
Y
2
A
ARG
376
A
ARG
14
1
Y
2
A
THR
377
A
THR
15
1
Y
2
A
SER
378
A
SER
16
1
Y
2
A
CYS
379
A
CYS
17
1
Y
2
A
MET
380
A
MET
18
1
Y
2
A
TYR
381
A
TYR
19
1
Y
2
A
GLY
382
A
GLY
20
1
Y
2
A
ALA
383
A
ALA
21
1
Y
2
A
ASN
384
A
ASN
22
1
Y
2
A
CYS
385
A
CYS
23
1
Y
2
A
TYR
386
A
TYR
24
1
Y
2
A
ARG
387
A
ARG
25
1
Y
2
A
LYS
388
A
LYS
26
1
Y
2
A
ASN
389
A
ASN
27
1
Y
2
A
PRO
390
A
PRO
28
1
Y
2
A
VAL
391
A
VAL
29
1
Y
2
A
HIS
392
A
HIS
30
1
Y
2
A
PHE
393
A
PHE
31
1
Y
2
A
GLN
394
A
GLN
32
1
Y
2
A
HIS
395
A
HIS
33
1
Y
2
A
PHE
396
A
PHE
34
1
Y
2
A
SER
397
A
SER
35
1
Y
2
A
HIS
398
A
HIS
36
1
Y
2
A
PRO
399
A
PRO
37
1
Y
2
A
GLY
400
A
GLY
38
1
Y
2
A
ASP
401
A
ASP
39
1
Y
2
A
SER
402
A
SER
40
1
Y
2
A
ASP
403
A
ASP
41
1
Y
2
A
TYR
404
A
TYR
42
1
Y
3
A
GLY
363
A
GLY
1
1
Y
3
A
PRO
364
A
PRO
2
1
Y
3
A
LEU
365
A
LEU
3
1
Y
3
A
GLY
366
A
GLY
4
1
Y
3
A
SER
367
A
SER
5
1
Y
3
A
GLY
368
A
GLY
6
1
Y
3
A
SER
369
A
SER
7
1
Y
3
A
GLU
370
A
GLU
8
1
Y
3
A
GLY
371
A
GLY
9
1
Y
3
A
ASN
372
A
ASN
10
1
Y
3
A
LYS
373
A
LYS
11
1
Y
3
A
VAL
374
A
VAL
12
1
Y
3
A
LYS
375
A
LYS
13
1
Y
3
A
ARG
376
A
ARG
14
1
Y
3
A
THR
377
A
THR
15
1
Y
3
A
SER
378
A
SER
16
1
Y
3
A
CYS
379
A
CYS
17
1
Y
3
A
MET
380
A
MET
18
1
Y
3
A
TYR
381
A
TYR
19
1
Y
3
A
GLY
382
A
GLY
20
1
Y
3
A
ALA
383
A
ALA
21
1
Y
3
A
ASN
384
A
ASN
22
1
Y
3
A
CYS
385
A
CYS
23
1
Y
3
A
TYR
386
A
TYR
24
1
Y
3
A
ARG
387
A
ARG
25
1
Y
3
A
LYS
388
A
LYS
26
1
Y
3
A
ASN
389
A
ASN
27
1
Y
3
A
PRO
390
A
PRO
28
1
Y
3
A
VAL
391
A
VAL
29
1
Y
3
A
HIS
392
A
HIS
30
1
Y
3
A
PHE
393
A
PHE
31
1
Y
3
A
GLN
394
A
GLN
32
1
Y
3
A
HIS
395
A
HIS
33
1
Y
3
A
PHE
396
A
PHE
34
1
Y
3
A
SER
397
A
SER
35
1
Y
3
A
HIS
398
A
HIS
36
1
Y
3
A
PRO
399
A
PRO
37
1
Y
3
A
GLY
400
A
GLY
38
1
Y
3
A
ASP
401
A
ASP
39
1
Y
3
A
SER
402
A
SER
40
1
Y
3
A
ASP
403
A
ASP
41
1
Y
3
A
TYR
404
A
TYR
42
1
Y
4
A
GLY
363
A
GLY
1
1
Y
4
A
PRO
364
A
PRO
2
1
Y
4
A
LEU
365
A
LEU
3
1
Y
4
A
GLY
366
A
GLY
4
1
Y
4
A
SER
367
A
SER
5
1
Y
4
A
GLY
368
A
GLY
6
1
Y
4
A
SER
369
A
SER
7
1
Y
4
A
GLU
370
A
GLU
8
1
Y
4
A
GLY
371
A
GLY
9
1
Y
4
A
ASN
372
A
ASN
10
1
Y
4
A
LYS
373
A
LYS
11
1
Y
4
A
VAL
374
A
VAL
12
1
Y
4
A
LYS
375
A
LYS
13
1
Y
4
A
ARG
376
A
ARG
14
1
Y
4
A
THR
377
A
THR
15
1
Y
4
A
SER
378
A
SER
16
1
Y
4
A
CYS
379
A
CYS
17
1
Y
4
A
MET
380
A
MET
18
1
Y
4
A
TYR
381
A
TYR
19
1
Y
4
A
GLY
382
A
GLY
20
1
Y
4
A
ALA
383
A
ALA
21
1
Y
4
A
ASN
384
A
ASN
22
1
Y
4
A
CYS
385
A
CYS
23
1
Y
4
A
TYR
386
A
TYR
24
1
Y
4
A
ARG
387
A
ARG
25
1
Y
4
A
LYS
388
A
LYS
26
1
Y
4
A
ASN
389
A
ASN
27
1
Y
4
A
PRO
390
A
PRO
28
1
Y
4
A
VAL
391
A
VAL
29
1
Y
4
A
HIS
392
A
HIS
30
1
Y
4
A
PHE
393
A
PHE
31
1
Y
4
A
GLN
394
A
GLN
32
1
Y
4
A
HIS
395
A
HIS
33
1
Y
4
A
PHE
396
A
PHE
34
1
Y
4
A
SER
397
A
SER
35
1
Y
4
A
HIS
398
A
HIS
36
1
Y
4
A
PRO
399
A
PRO
37
1
Y
4
A
GLY
400
A
GLY
38
1
Y
4
A
ASP
401
A
ASP
39
1
Y
4
A
SER
402
A
SER
40
1
Y
4
A
ASP
403
A
ASP
41
1
Y
4
A
TYR
404
A
TYR
42
1
Y
5
A
GLY
363
A
GLY
1
1
Y
5
A
PRO
364
A
PRO
2
1
Y
5
A
LEU
365
A
LEU
3
1
Y
5
A
GLY
366
A
GLY
4
1
Y
5
A
SER
367
A
SER
5
1
Y
5
A
GLY
368
A
GLY
6
1
Y
5
A
SER
369
A
SER
7
1
Y
5
A
GLU
370
A
GLU
8
1
Y
5
A
GLY
371
A
GLY
9
1
Y
5
A
ASN
372
A
ASN
10
1
Y
5
A
LYS
373
A
LYS
11
1
Y
5
A
VAL
374
A
VAL
12
1
Y
5
A
LYS
375
A
LYS
13
1
Y
5
A
ARG
376
A
ARG
14
1
Y
5
A
THR
377
A
THR
15
1
Y
5
A
SER
378
A
SER
16
1
Y
5
A
CYS
379
A
CYS
17
1
Y
5
A
MET
380
A
MET
18
1
Y
5
A
TYR
381
A
TYR
19
1
Y
5
A
GLY
382
A
GLY
20
1
Y
5
A
ALA
383
A
ALA
21
1
Y
5
A
ASN
384
A
ASN
22
1
Y
5
A
CYS
385
A
CYS
23
1
Y
5
A
TYR
386
A
TYR
24
1
Y
5
A
ARG
387
A
ARG
25
1
Y
5
A
LYS
388
A
LYS
26
1
Y
5
A
ASN
389
A
ASN
27
1
Y
5
A
PRO
390
A
PRO
28
1
Y
5
A
VAL
391
A
VAL
29
1
Y
5
A
HIS
392
A
HIS
30
1
Y
5
A
PHE
393
A
PHE
31
1
Y
5
A
GLN
394
A
GLN
32
1
Y
5
A
HIS
395
A
HIS
33
1
Y
5
A
PHE
396
A
PHE
34
1
Y
5
A
SER
397
A
SER
35
1
Y
5
A
HIS
398
A
HIS
36
1
Y
5
A
PRO
399
A
PRO
37
1
Y
5
A
GLY
400
A
GLY
38
1
Y
5
A
ASP
401
A
ASP
39
1
Y
5
A
SER
402
A
SER
40
1
Y
5
A
ASP
403
A
ASP
41
1
Y
5
A
TYR
404
A
TYR
42
1
Y
6
A
GLY
363
A
GLY
1
1
Y
6
A
PRO
364
A
PRO
2
1
Y
6
A
LEU
365
A
LEU
3
1
Y
6
A
GLY
366
A
GLY
4
1
Y
6
A
SER
367
A
SER
5
1
Y
6
A
GLY
368
A
GLY
6
1
Y
6
A
SER
369
A
SER
7
1
Y
6
A
GLU
370
A
GLU
8
1
Y
6
A
GLY
371
A
GLY
9
1
Y
6
A
ASN
372
A
ASN
10
1
Y
6
A
LYS
373
A
LYS
11
1
Y
6
A
VAL
374
A
VAL
12
1
Y
6
A
LYS
375
A
LYS
13
1
Y
6
A
ARG
376
A
ARG
14
1
Y
6
A
THR
377
A
THR
15
1
Y
6
A
SER
378
A
SER
16
1
Y
6
A
CYS
379
A
CYS
17
1
Y
6
A
MET
380
A
MET
18
1
Y
6
A
TYR
381
A
TYR
19
1
Y
6
A
GLY
382
A
GLY
20
1
Y
6
A
ALA
383
A
ALA
21
1
Y
6
A
ASN
384
A
ASN
22
1
Y
6
A
CYS
385
A
CYS
23
1
Y
6
A
TYR
386
A
TYR
24
1
Y
6
A
ARG
387
A
ARG
25
1
Y
6
A
LYS
388
A
LYS
26
1
Y
6
A
ASN
389
A
ASN
27
1
Y
6
A
PRO
390
A
PRO
28
1
Y
6
A
VAL
391
A
VAL
29
1
Y
6
A
HIS
392
A
HIS
30
1
Y
6
A
PHE
393
A
PHE
31
1
Y
6
A
GLN
394
A
GLN
32
1
Y
6
A
HIS
395
A
HIS
33
1
Y
6
A
PHE
396
A
PHE
34
1
Y
6
A
SER
397
A
SER
35
1
Y
6
A
HIS
398
A
HIS
36
1
Y
6
A
PRO
399
A
PRO
37
1
Y
6
A
GLY
400
A
GLY
38
1
Y
6
A
ASP
401
A
ASP
39
1
Y
6
A
SER
402
A
SER
40
1
Y
6
A
ASP
403
A
ASP
41
1
Y
6
A
TYR
404
A
TYR
42
1
Y
7
A
GLY
363
A
GLY
1
1
Y
7
A
PRO
364
A
PRO
2
1
Y
7
A
LEU
365
A
LEU
3
1
Y
7
A
GLY
366
A
GLY
4
1
Y
7
A
SER
367
A
SER
5
1
Y
7
A
GLY
368
A
GLY
6
1
Y
7
A
SER
369
A
SER
7
1
Y
7
A
GLU
370
A
GLU
8
1
Y
7
A
GLY
371
A
GLY
9
1
Y
7
A
ASN
372
A
ASN
10
1
Y
7
A
LYS
373
A
LYS
11
1
Y
7
A
VAL
374
A
VAL
12
1
Y
7
A
LYS
375
A
LYS
13
1
Y
7
A
ARG
376
A
ARG
14
1
Y
7
A
THR
377
A
THR
15
1
Y
7
A
SER
378
A
SER
16
1
Y
7
A
CYS
379
A
CYS
17
1
Y
7
A
MET
380
A
MET
18
1
Y
7
A
TYR
381
A
TYR
19
1
Y
7
A
GLY
382
A
GLY
20
1
Y
7
A
ALA
383
A
ALA
21
1
Y
7
A
ASN
384
A
ASN
22
1
Y
7
A
CYS
385
A
CYS
23
1
Y
7
A
TYR
386
A
TYR
24
1
Y
7
A
ARG
387
A
ARG
25
1
Y
7
A
LYS
388
A
LYS
26
1
Y
7
A
ASN
389
A
ASN
27
1
Y
7
A
PRO
390
A
PRO
28
1
Y
7
A
VAL
391
A
VAL
29
1
Y
7
A
HIS
392
A
HIS
30
1
Y
7
A
PHE
393
A
PHE
31
1
Y
7
A
GLN
394
A
GLN
32
1
Y
7
A
HIS
395
A
HIS
33
1
Y
7
A
PHE
396
A
PHE
34
1
Y
7
A
SER
397
A
SER
35
1
Y
7
A
HIS
398
A
HIS
36
1
Y
7
A
PRO
399
A
PRO
37
1
Y
7
A
GLY
400
A
GLY
38
1
Y
7
A
ASP
401
A
ASP
39
1
Y
7
A
SER
402
A
SER
40
1
Y
7
A
ASP
403
A
ASP
41
1
Y
7
A
TYR
404
A
TYR
42
1
Y
8
A
GLY
363
A
GLY
1
1
Y
8
A
PRO
364
A
PRO
2
1
Y
8
A
LEU
365
A
LEU
3
1
Y
8
A
GLY
366
A
GLY
4
1
Y
8
A
SER
367
A
SER
5
1
Y
8
A
GLY
368
A
GLY
6
1
Y
8
A
SER
369
A
SER
7
1
Y
8
A
GLU
370
A
GLU
8
1
Y
8
A
GLY
371
A
GLY
9
1
Y
8
A
ASN
372
A
ASN
10
1
Y
8
A
LYS
373
A
LYS
11
1
Y
8
A
VAL
374
A
VAL
12
1
Y
8
A
LYS
375
A
LYS
13
1
Y
8
A
ARG
376
A
ARG
14
1
Y
8
A
THR
377
A
THR
15
1
Y
8
A
SER
378
A
SER
16
1
Y
8
A
CYS
379
A
CYS
17
1
Y
8
A
MET
380
A
MET
18
1
Y
8
A
TYR
381
A
TYR
19
1
Y
8
A
GLY
382
A
GLY
20
1
Y
8
A
ALA
383
A
ALA
21
1
Y
8
A
ASN
384
A
ASN
22
1
Y
8
A
CYS
385
A
CYS
23
1
Y
8
A
TYR
386
A
TYR
24
1
Y
8
A
ARG
387
A
ARG
25
1
Y
8
A
LYS
388
A
LYS
26
1
Y
8
A
ASN
389
A
ASN
27
1
Y
8
A
PRO
390
A
PRO
28
1
Y
8
A
VAL
391
A
VAL
29
1
Y
8
A
HIS
392
A
HIS
30
1
Y
8
A
PHE
393
A
PHE
31
1
Y
8
A
GLN
394
A
GLN
32
1
Y
8
A
HIS
395
A
HIS
33
1
Y
8
A
PHE
396
A
PHE
34
1
Y
8
A
SER
397
A
SER
35
1
Y
8
A
HIS
398
A
HIS
36
1
Y
8
A
PRO
399
A
PRO
37
1
Y
8
A
GLY
400
A
GLY
38
1
Y
8
A
ASP
401
A
ASP
39
1
Y
8
A
SER
402
A
SER
40
1
Y
8
A
ASP
403
A
ASP
41
1
Y
8
A
TYR
404
A
TYR
42
1
Y
9
A
GLY
363
A
GLY
1
1
Y
9
A
PRO
364
A
PRO
2
1
Y
9
A
LEU
365
A
LEU
3
1
Y
9
A
GLY
366
A
GLY
4
1
Y
9
A
SER
367
A
SER
5
1
Y
9
A
GLY
368
A
GLY
6
1
Y
9
A
SER
369
A
SER
7
1
Y
9
A
GLU
370
A
GLU
8
1
Y
9
A
GLY
371
A
GLY
9
1
Y
9
A
ASN
372
A
ASN
10
1
Y
9
A
LYS
373
A
LYS
11
1
Y
9
A
VAL
374
A
VAL
12
1
Y
9
A
LYS
375
A
LYS
13
1
Y
9
A
ARG
376
A
ARG
14
1
Y
9
A
THR
377
A
THR
15
1
Y
9
A
SER
378
A
SER
16
1
Y
9
A
CYS
379
A
CYS
17
1
Y
9
A
MET
380
A
MET
18
1
Y
9
A
TYR
381
A
TYR
19
1
Y
9
A
GLY
382
A
GLY
20
1
Y
9
A
ALA
383
A
ALA
21
1
Y
9
A
ASN
384
A
ASN
22
1
Y
9
A
CYS
385
A
CYS
23
1
Y
9
A
TYR
386
A
TYR
24
1
Y
9
A
ARG
387
A
ARG
25
1
Y
9
A
LYS
388
A
LYS
26
1
Y
9
A
ASN
389
A
ASN
27
1
Y
9
A
PRO
390
A
PRO
28
1
Y
9
A
VAL
391
A
VAL
29
1
Y
9
A
HIS
392
A
HIS
30
1
Y
9
A
PHE
393
A
PHE
31
1
Y
9
A
GLN
394
A
GLN
32
1
Y
9
A
HIS
395
A
HIS
33
1
Y
9
A
PHE
396
A
PHE
34
1
Y
9
A
SER
397
A
SER
35
1
Y
9
A
HIS
398
A
HIS
36
1
Y
9
A
PRO
399
A
PRO
37
1
Y
9
A
GLY
400
A
GLY
38
1
Y
9
A
ASP
401
A
ASP
39
1
Y
9
A
SER
402
A
SER
40
1
Y
9
A
ASP
403
A
ASP
41
1
Y
9
A
TYR
404
A
TYR
42
1
Y
10
A
GLY
363
A
GLY
1
1
Y
10
A
PRO
364
A
PRO
2
1
Y
10
A
LEU
365
A
LEU
3
1
Y
10
A
GLY
366
A
GLY
4
1
Y
10
A
SER
367
A
SER
5
1
Y
10
A
GLY
368
A
GLY
6
1
Y
10
A
SER
369
A
SER
7
1
Y
10
A
GLU
370
A
GLU
8
1
Y
10
A
GLY
371
A
GLY
9
1
Y
10
A
ASN
372
A
ASN
10
1
Y
10
A
LYS
373
A
LYS
11
1
Y
10
A
VAL
374
A
VAL
12
1
Y
10
A
LYS
375
A
LYS
13
1
Y
10
A
ARG
376
A
ARG
14
1
Y
10
A
THR
377
A
THR
15
1
Y
10
A
SER
378
A
SER
16
1
Y
10
A
CYS
379
A
CYS
17
1
Y
10
A
MET
380
A
MET
18
1
Y
10
A
TYR
381
A
TYR
19
1
Y
10
A
GLY
382
A
GLY
20
1
Y
10
A
ALA
383
A
ALA
21
1
Y
10
A
ASN
384
A
ASN
22
1
Y
10
A
CYS
385
A
CYS
23
1
Y
10
A
TYR
386
A
TYR
24
1
Y
10
A
ARG
387
A
ARG
25
1
Y
10
A
LYS
388
A
LYS
26
1
Y
10
A
ASN
389
A
ASN
27
1
Y
10
A
PRO
390
A
PRO
28
1
Y
10
A
VAL
391
A
VAL
29
1
Y
10
A
HIS
392
A
HIS
30
1
Y
10
A
PHE
393
A
PHE
31
1
Y
10
A
GLN
394
A
GLN
32
1
Y
10
A
HIS
395
A
HIS
33
1
Y
10
A
PHE
396
A
PHE
34
1
Y
10
A
SER
397
A
SER
35
1
Y
10
A
HIS
398
A
HIS
36
1
Y
10
A
PRO
399
A
PRO
37
1
Y
10
A
GLY
400
A
GLY
38
1
Y
10
A
ASP
401
A
ASP
39
1
Y
10
A
SER
402
A
SER
40
1
Y
10
A
ASP
403
A
ASP
41
1
Y
10
A
TYR
404
A
TYR
42
1
Y
1
A
VAL
407
-115.04
55.45
1
A
ILE
409
-116.58
59.25
1
A
GLN
412
69.35
-65.68
1
A
ASP
413
-172.11
45.13
1
A
THR
415
-110.38
65.62
1
A
ASP
417
-115.96
53.64
1
A
PRO
419
-76.47
-88.37
1
A
GLU
420
175.22
105.39
1
A
THR
442
-102.46
52.74
1
A
ARG
446
-179.92
-44.05
1
A
LEU
449
179.59
-50.36
1
A
ASP
450
53.40
96.01
2
A
VAL
410
-102.92
66.57
2
A
ASP
413
-152.00
33.40
2
A
ASP
417
70.71
48.71
2
A
PRO
419
-79.25
-86.36
2
A
GLU
420
173.81
107.48
2
A
SER
426
-90.67
55.27
2
A
THR
442
-106.26
66.11
2
A
ARG
446
178.26
-42.64
2
A
LEU
449
-177.10
-52.02
3
A
VAL
410
-104.24
67.74
3
A
GLU
414
-151.45
32.90
3
A
PRO
419
-79.95
-82.66
3
A
GLU
420
173.47
103.81
3
A
SER
426
-94.05
55.02
3
A
THR
442
66.59
75.11
3
A
ARG
446
-179.71
-44.33
4
A
VAL
410
-105.02
65.54
4
A
GLU
414
-159.26
40.51
4
A
PRO
419
-75.78
-88.46
4
A
GLU
420
173.59
105.19
4
A
SER
426
-93.64
47.31
4
A
VAL
445
-147.38
53.38
4
A
ARG
446
-178.55
-44.16
4
A
ASN
447
-113.53
77.81
4
A
LEU
449
-145.60
32.44
4
A
ASP
450
48.72
78.40
5
A
VAL
407
-107.93
53.81
5
A
VAL
410
-116.48
55.47
5
A
GLN
412
69.18
-66.18
5
A
ASP
413
-173.46
45.70
5
A
PRO
419
-72.53
-92.92
5
A
GLU
420
-177.12
125.03
5
A
SER
426
-101.17
56.53
5
A
ASN
441
160.19
-39.23
5
A
VAL
445
-149.04
54.33
5
A
ARG
446
-178.26
-44.17
5
A
ASN
447
-116.81
60.60
5
A
LEU
449
-143.03
41.40
6
A
VAL
407
-110.38
54.26
6
A
ILE
409
-114.23
60.26
6
A
VAL
410
-110.66
67.23
6
A
GLU
414
-148.75
49.09
6
A
THR
415
-105.80
67.13
6
A
PRO
419
-77.68
-88.11
6
A
GLU
420
174.28
118.09
6
A
SER
426
-102.40
53.67
6
A
ASN
441
140.16
-43.97
6
A
ARG
446
178.32
-43.35
6
A
ASN
447
-115.51
76.80
6
A
LEU
449
-159.45
40.34
7
A
ILE
409
-111.68
60.87
7
A
VAL
410
-108.95
64.45
7
A
GLN
412
63.36
-65.94
7
A
THR
415
-110.73
67.57
7
A
ASP
417
-154.88
44.15
7
A
PRO
419
-77.51
-94.67
7
A
GLU
420
-177.85
114.19
7
A
SER
426
-98.01
53.18
7
A
ASN
441
167.53
-61.81
7
A
VAL
445
-149.49
47.47
7
A
ARG
446
-168.65
-45.98
7
A
ASP
450
51.50
89.68
8
A
ILE
409
-110.59
53.06
8
A
ASP
413
-162.71
-56.41
8
A
ASP
417
-118.11
50.40
8
A
PRO
419
-70.82
-88.00
8
A
GLU
420
173.90
103.83
8
A
THR
442
-100.99
66.08
8
A
VAL
445
-150.68
55.47
8
A
ARG
446
-178.51
-42.94
9
A
VAL
407
51.69
94.76
9
A
ASP
413
68.13
79.00
9
A
THR
415
-149.56
51.64
9
A
PRO
419
-86.66
-91.89
9
A
GLU
420
-175.86
114.11
9
A
SER
426
-101.77
49.65
9
A
LYS
430
-117.63
-71.25
9
A
ASN
431
56.03
153.65
9
A
ASN
441
172.09
-48.85
9
A
VAL
445
-151.33
55.58
9
A
ARG
446
-177.09
-43.46
9
A
ASN
447
-107.60
73.02
9
A
VAL
448
-141.00
23.43
9
A
LEU
449
-179.18
43.34
10
A
GLU
414
-160.12
38.79
10
A
THR
415
-112.15
63.72
10
A
PRO
419
-72.49
-82.30
10
A
GLU
420
168.62
100.41
10
A
THR
442
57.47
83.51
10
A
ASN
447
-108.68
67.02
10
A
LEU
449
-176.96
43.06
Aprataxin and PNK-like factor (E.C.4.2.99.18)
lowest energy, model 1
Second PBZ domain of human APLF protein in complex with ribofuranosyladenosine
1
N
N
2
N
N
3
N
N
4
N
N
A
ASN
431
A
ASN
69
HELX_P
A
TYR
438
A
TYR
76
1
2
8
covale
1.421
one
A
ADN
1002
C
O2'
ADN
1_555
A
RIB
1003
D
C1
RIB
1_555
metalc
2.287
A
CYS
421
A
SG
CYS
59
1_555
A
ZN
1001
B
ZN
ZN
1_555
metalc
2.245
A
CYS
427
A
SG
CYS
65
1_555
A
ZN
1001
B
ZN
ZN
1_555
metalc
1.845
A
HIS
434
A
NE2
HIS
72
1_555
A
ZN
1001
B
ZN
ZN
1_555
metalc
1.937
A
HIS
440
A
NE2
HIS
78
1_555
A
ZN
1001
B
ZN
ZN
1_555
LYASE
ADP-ribosylation, DNA damage, DNA repair, Metal-binding, Nucleotide-binding, Nucleus, Zinc, Zinc-finger, LYASE
APLF_HUMAN
UNP
1
368
Q8IW19
GSEGNKVKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDDRPECPYGPSCYRKNPQHKIEYRHNTLPVRN
VLDE
368
451
2KQE
368
451
Q8IW19
A
1
6
89
1
expression tag
GLY
363
2KQE
A
Q8IW19
UNP
1
1
expression tag
PRO
364
2KQE
A
Q8IW19
UNP
2
1
expression tag
LEU
365
2KQE
A
Q8IW19
UNP
3
1
expression tag
GLY
366
2KQE
A
Q8IW19
UNP
4
1
expression tag
SER
367
2KQE
A
Q8IW19
UNP
5
1
P 1