1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Neuhaus, D. Eustermann, S. Brockmann, C. Yang, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H13 N5 O4 267.241 ADENOSINE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C5 H10 O5 150.130 alpha-D-ribofuranose D-saccharide, alpha linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Nat.Struct.Mol.Biol. 1545-9993 17 241 243 10.1038/nsmb.1747 20098424 Solution structures of the two PBZ domains from human APLF and their interaction with poly(ADP-ribose). 2010 10053.062 Aprataxin and PNK-like factor 4.2.99.18 sequence database residues 363-451, PBZ-type 2 domain 1 man polymer 65.409 ZINC ION 1 syn non-polymer 267.241 ADENOSINE 1 syn non-polymer 150.130 alpha-D-ribofuranose 1 man non-polymer Apurinic-apyrimidinic endonuclease APLF, PNK and APTX-like FHA domain-containing protein, XRCC1-interacting protein 1 no no GPLGSGSEGNKVKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDDRPECPYGPSCYRKNPQHKIEYRHNT LPVRNVLDE GPLGSGSEGNKVKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDDRPECPYGPSCYRKNPQHKIEYRHNT LPVRNVLDE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample APLF, C2orf13, PALF, XIP1 9606 Homo sapiens 562 Escherichia coli pGEX-6P-1 atom_site chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_conn_type struct_ref_seq_dif struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Atomic model Data collection Database references Derived calculations Structure summary 1 0 2010-01-19 1 1 2011-07-13 2 0 2020-07-29 _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _pdbx_nmr_spectrometer.model _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn_type.id _struct_ref_seq_dif.details DRibfa a-D-ribofuranose a-D-Ribf Rib chemical shifts for this system FIRST PBZ DOMAIN OF HUMAN APLF PROTEIN SECOND PBZ DOMAIN OF HUMAN APLF PROTEIN FIRST PBZ DOMAIN OF HUMAN APLF PROTEIN IN COMPLEX WITH RIBOFURANOSYLADENOSINE HELIX DETERMINATION METHOD: AUTHOR BMRB Y RCSB 2009-11-04 REL REL ZN ZINC ION ADN ADENOSINE RIB alpha-D-ribofuranose RESIDUES 363-404 ARE NOT SHOWN IN THE COORDINATES BECAUSE STRUCTURE CALCULATIONS WERE CARRIED OUT ON RESIDUES 405-451 ONLY. 8 0 5 5 The author states that NMR was carried out on a single fragment (363-451) containing both fingers F1 and F2 of APLF, but the structure calculations were carried out separately for each finger. This co-ordinate file includes residues 405-451 and contains F2 as well as the unstructured regions on either side. structures with the lowest energy 50 10 9.6 0.71 XPLOR-NIH 2D 1H-15N HSQC 2D 1H-13C HSQC full-width 2D 1H-1H NOESY 2D 1H-1H NOESY filtered 3D 1H-13C NOESY 2D 1H-1H TOCSY 2D 1H-13C HSQC full-width 2D 1H-1H NOESY 2D 1H-1H NOESY filtered 3D 1H-13C NOESY 2D 1H-1H TOCSY 20 mM 200 mM 100 uM 2 mM [U-2H] 0.8 mM [U-98% 13C; U-98% 15N] 2 mM 20 mM 200 mM 100 uM 2 mM [U-2H] 0.8 mM [U-98% 13C; U-98% 15N] 2 mM 0.4 6.0 ambient 278 K 0.4 6.0 ambient 286 K 0.4 6.0 ambient 300 K simulated annealing 1 lowest energy 20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.8 mM [U-98% 13C; U-98% 15N] APLF_363-451, 2 mM RFA, 95% H2O/5% D2O 95% H2O/5% D2O 20 mM potassium pyrophosphate, 200 mM sodium chloride, 100 uM zinc sulphate, 2 mM [U-2H] DTT, 0.8 mM [U-98% 13C; U-98% 15N] APLF_363-451, 2 mM RFA, 100% D2O 100% D2O Schwieters, Kuszewski, Tjandra and Clore structure solution XPLOR-NIH Schwieters, Kuszewski, Tjandra and Clore refinement XPLOR-NIH 800 Bruker AVANCE Bruker Avance 600 Bruker DMX Bruker DMX 500 Bruker DRX Bruker DRX ZN 1001 2 ZN ZN 1001 A ADN 1002 3 ADN ADN 1002 A RIB 1003 4 RIB RIB 1003 A n 1 363 A n 2 364 A n 3 365 A n 4 366 A n 5 367 A n 6 368 A n 7 369 A n 8 370 A n 9 371 A n 10 372 A n 11 373 A n 12 374 A n 13 375 A n 14 376 A n 15 377 A n 16 378 A n 17 379 A n 18 380 A n 19 381 A n 20 382 A n 21 383 A n 22 384 A n 23 385 A n 24 386 A n 25 387 A n 26 388 A n 27 389 A n 28 390 A n 29 391 A n 30 392 A n 31 393 A n 32 394 A n 33 395 A n 34 396 A n 35 397 A n 36 398 A n 37 399 A n 38 400 A n 39 401 A n 40 402 A n 41 403 A n 42 404 A GLY 405 n 43 GLY 405 A GLY 406 n 44 GLY 406 A VAL 407 n 45 VAL 407 A GLN 408 n 46 GLN 408 A ILE 409 n 47 ILE 409 A VAL 410 n 48 VAL 410 A GLY 411 n 49 GLY 411 A GLN 412 n 50 GLN 412 A ASP 413 n 51 ASP 413 A GLU 414 n 52 GLU 414 A THR 415 n 53 THR 415 A ASP 416 n 54 ASP 416 A ASP 417 n 55 ASP 417 A ARG 418 n 56 ARG 418 A PRO 419 n 57 PRO 419 A GLU 420 n 58 GLU 420 A CYS 421 n 59 CYS 421 A PRO 422 n 60 PRO 422 A TYR 423 n 61 TYR 423 A GLY 424 n 62 GLY 424 A PRO 425 n 63 PRO 425 A SER 426 n 64 SER 426 A CYS 427 n 65 CYS 427 A TYR 428 n 66 TYR 428 A ARG 429 n 67 ARG 429 A LYS 430 n 68 LYS 430 A ASN 431 n 69 ASN 431 A PRO 432 n 70 PRO 432 A GLN 433 n 71 GLN 433 A HIS 434 n 72 HIS 434 A LYS 435 n 73 LYS 435 A ILE 436 n 74 ILE 436 A GLU 437 n 75 GLU 437 A TYR 438 n 76 TYR 438 A ARG 439 n 77 ARG 439 A HIS 440 n 78 HIS 440 A ASN 441 n 79 ASN 441 A THR 442 n 80 THR 442 A LEU 443 n 81 LEU 443 A PRO 444 n 82 PRO 444 A VAL 445 n 83 VAL 445 A ARG 446 n 84 ARG 446 A ASN 447 n 85 ASN 447 A VAL 448 n 86 VAL 448 A LEU 449 n 87 LEU 449 A ASP 450 n 88 ASP 450 A GLU 451 n 89 GLU 451 A author_defined_assembly 1 monomeric A CYS 421 A SG CYS 59 1_555 A ZN 1001 B ZN ZN 1_555 A CYS 427 A SG CYS 65 1_555 116.0 A CYS 421 A SG CYS 59 1_555 A ZN 1001 B ZN ZN 1_555 A HIS 434 A NE2 HIS 72 1_555 103.8 A CYS 427 A SG CYS 65 1_555 A ZN 1001 B ZN ZN 1_555 A HIS 434 A NE2 HIS 72 1_555 110.2 A CYS 421 A SG CYS 59 1_555 A ZN 1001 B ZN ZN 1_555 A HIS 440 A NE2 HIS 78 1_555 102.3 A CYS 427 A SG CYS 65 1_555 A ZN 1001 B ZN ZN 1_555 A HIS 440 A NE2 HIS 78 1_555 110.1 A HIS 434 A NE2 HIS 72 1_555 A ZN 1001 B ZN ZN 1_555 A HIS 440 A NE2 HIS 78 1_555 114.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A GLY 363 A GLY 1 1 Y 1 A PRO 364 A PRO 2 1 Y 1 A LEU 365 A LEU 3 1 Y 1 A GLY 366 A GLY 4 1 Y 1 A SER 367 A SER 5 1 Y 1 A GLY 368 A GLY 6 1 Y 1 A SER 369 A SER 7 1 Y 1 A GLU 370 A GLU 8 1 Y 1 A GLY 371 A GLY 9 1 Y 1 A ASN 372 A ASN 10 1 Y 1 A LYS 373 A LYS 11 1 Y 1 A VAL 374 A VAL 12 1 Y 1 A LYS 375 A LYS 13 1 Y 1 A ARG 376 A ARG 14 1 Y 1 A THR 377 A THR 15 1 Y 1 A SER 378 A SER 16 1 Y 1 A CYS 379 A CYS 17 1 Y 1 A MET 380 A MET 18 1 Y 1 A TYR 381 A TYR 19 1 Y 1 A GLY 382 A GLY 20 1 Y 1 A ALA 383 A ALA 21 1 Y 1 A ASN 384 A ASN 22 1 Y 1 A CYS 385 A CYS 23 1 Y 1 A TYR 386 A TYR 24 1 Y 1 A ARG 387 A ARG 25 1 Y 1 A LYS 388 A LYS 26 1 Y 1 A ASN 389 A ASN 27 1 Y 1 A PRO 390 A PRO 28 1 Y 1 A VAL 391 A VAL 29 1 Y 1 A HIS 392 A HIS 30 1 Y 1 A PHE 393 A PHE 31 1 Y 1 A GLN 394 A GLN 32 1 Y 1 A HIS 395 A HIS 33 1 Y 1 A PHE 396 A PHE 34 1 Y 1 A SER 397 A SER 35 1 Y 1 A HIS 398 A HIS 36 1 Y 1 A PRO 399 A PRO 37 1 Y 1 A GLY 400 A GLY 38 1 Y 1 A ASP 401 A ASP 39 1 Y 1 A SER 402 A SER 40 1 Y 1 A ASP 403 A ASP 41 1 Y 1 A TYR 404 A TYR 42 1 Y 2 A GLY 363 A GLY 1 1 Y 2 A PRO 364 A PRO 2 1 Y 2 A LEU 365 A LEU 3 1 Y 2 A GLY 366 A GLY 4 1 Y 2 A SER 367 A SER 5 1 Y 2 A GLY 368 A GLY 6 1 Y 2 A SER 369 A SER 7 1 Y 2 A GLU 370 A GLU 8 1 Y 2 A GLY 371 A GLY 9 1 Y 2 A ASN 372 A ASN 10 1 Y 2 A LYS 373 A LYS 11 1 Y 2 A VAL 374 A VAL 12 1 Y 2 A LYS 375 A LYS 13 1 Y 2 A ARG 376 A ARG 14 1 Y 2 A THR 377 A THR 15 1 Y 2 A SER 378 A SER 16 1 Y 2 A CYS 379 A CYS 17 1 Y 2 A MET 380 A MET 18 1 Y 2 A TYR 381 A TYR 19 1 Y 2 A GLY 382 A GLY 20 1 Y 2 A ALA 383 A ALA 21 1 Y 2 A ASN 384 A ASN 22 1 Y 2 A CYS 385 A CYS 23 1 Y 2 A TYR 386 A TYR 24 1 Y 2 A ARG 387 A ARG 25 1 Y 2 A LYS 388 A LYS 26 1 Y 2 A ASN 389 A ASN 27 1 Y 2 A PRO 390 A PRO 28 1 Y 2 A VAL 391 A VAL 29 1 Y 2 A HIS 392 A HIS 30 1 Y 2 A PHE 393 A PHE 31 1 Y 2 A GLN 394 A GLN 32 1 Y 2 A HIS 395 A HIS 33 1 Y 2 A PHE 396 A PHE 34 1 Y 2 A SER 397 A SER 35 1 Y 2 A HIS 398 A HIS 36 1 Y 2 A PRO 399 A PRO 37 1 Y 2 A GLY 400 A GLY 38 1 Y 2 A ASP 401 A ASP 39 1 Y 2 A SER 402 A SER 40 1 Y 2 A ASP 403 A ASP 41 1 Y 2 A TYR 404 A TYR 42 1 Y 3 A GLY 363 A GLY 1 1 Y 3 A PRO 364 A PRO 2 1 Y 3 A LEU 365 A LEU 3 1 Y 3 A GLY 366 A GLY 4 1 Y 3 A SER 367 A SER 5 1 Y 3 A GLY 368 A GLY 6 1 Y 3 A SER 369 A SER 7 1 Y 3 A GLU 370 A GLU 8 1 Y 3 A GLY 371 A GLY 9 1 Y 3 A ASN 372 A ASN 10 1 Y 3 A LYS 373 A LYS 11 1 Y 3 A VAL 374 A VAL 12 1 Y 3 A LYS 375 A LYS 13 1 Y 3 A ARG 376 A ARG 14 1 Y 3 A THR 377 A THR 15 1 Y 3 A SER 378 A SER 16 1 Y 3 A CYS 379 A CYS 17 1 Y 3 A MET 380 A MET 18 1 Y 3 A TYR 381 A TYR 19 1 Y 3 A GLY 382 A GLY 20 1 Y 3 A ALA 383 A ALA 21 1 Y 3 A ASN 384 A ASN 22 1 Y 3 A CYS 385 A CYS 23 1 Y 3 A TYR 386 A TYR 24 1 Y 3 A ARG 387 A ARG 25 1 Y 3 A LYS 388 A LYS 26 1 Y 3 A ASN 389 A ASN 27 1 Y 3 A PRO 390 A PRO 28 1 Y 3 A VAL 391 A VAL 29 1 Y 3 A HIS 392 A HIS 30 1 Y 3 A PHE 393 A PHE 31 1 Y 3 A GLN 394 A GLN 32 1 Y 3 A HIS 395 A HIS 33 1 Y 3 A PHE 396 A PHE 34 1 Y 3 A SER 397 A SER 35 1 Y 3 A HIS 398 A HIS 36 1 Y 3 A PRO 399 A PRO 37 1 Y 3 A GLY 400 A GLY 38 1 Y 3 A ASP 401 A ASP 39 1 Y 3 A SER 402 A SER 40 1 Y 3 A ASP 403 A ASP 41 1 Y 3 A TYR 404 A TYR 42 1 Y 4 A GLY 363 A GLY 1 1 Y 4 A PRO 364 A PRO 2 1 Y 4 A LEU 365 A LEU 3 1 Y 4 A GLY 366 A GLY 4 1 Y 4 A SER 367 A SER 5 1 Y 4 A GLY 368 A GLY 6 1 Y 4 A SER 369 A SER 7 1 Y 4 A GLU 370 A GLU 8 1 Y 4 A GLY 371 A GLY 9 1 Y 4 A ASN 372 A ASN 10 1 Y 4 A LYS 373 A LYS 11 1 Y 4 A VAL 374 A VAL 12 1 Y 4 A LYS 375 A LYS 13 1 Y 4 A ARG 376 A ARG 14 1 Y 4 A THR 377 A THR 15 1 Y 4 A SER 378 A SER 16 1 Y 4 A CYS 379 A CYS 17 1 Y 4 A MET 380 A MET 18 1 Y 4 A TYR 381 A TYR 19 1 Y 4 A GLY 382 A GLY 20 1 Y 4 A ALA 383 A ALA 21 1 Y 4 A ASN 384 A ASN 22 1 Y 4 A CYS 385 A CYS 23 1 Y 4 A TYR 386 A TYR 24 1 Y 4 A ARG 387 A ARG 25 1 Y 4 A LYS 388 A LYS 26 1 Y 4 A ASN 389 A ASN 27 1 Y 4 A PRO 390 A PRO 28 1 Y 4 A VAL 391 A VAL 29 1 Y 4 A HIS 392 A HIS 30 1 Y 4 A PHE 393 A PHE 31 1 Y 4 A GLN 394 A GLN 32 1 Y 4 A HIS 395 A HIS 33 1 Y 4 A PHE 396 A PHE 34 1 Y 4 A SER 397 A SER 35 1 Y 4 A HIS 398 A HIS 36 1 Y 4 A PRO 399 A PRO 37 1 Y 4 A GLY 400 A GLY 38 1 Y 4 A ASP 401 A ASP 39 1 Y 4 A SER 402 A SER 40 1 Y 4 A ASP 403 A ASP 41 1 Y 4 A TYR 404 A TYR 42 1 Y 5 A GLY 363 A GLY 1 1 Y 5 A PRO 364 A PRO 2 1 Y 5 A LEU 365 A LEU 3 1 Y 5 A GLY 366 A GLY 4 1 Y 5 A SER 367 A SER 5 1 Y 5 A GLY 368 A GLY 6 1 Y 5 A SER 369 A SER 7 1 Y 5 A GLU 370 A GLU 8 1 Y 5 A GLY 371 A GLY 9 1 Y 5 A ASN 372 A ASN 10 1 Y 5 A LYS 373 A LYS 11 1 Y 5 A VAL 374 A VAL 12 1 Y 5 A LYS 375 A LYS 13 1 Y 5 A ARG 376 A ARG 14 1 Y 5 A THR 377 A THR 15 1 Y 5 A SER 378 A SER 16 1 Y 5 A CYS 379 A CYS 17 1 Y 5 A MET 380 A MET 18 1 Y 5 A TYR 381 A TYR 19 1 Y 5 A GLY 382 A GLY 20 1 Y 5 A ALA 383 A ALA 21 1 Y 5 A ASN 384 A ASN 22 1 Y 5 A CYS 385 A CYS 23 1 Y 5 A TYR 386 A TYR 24 1 Y 5 A ARG 387 A ARG 25 1 Y 5 A LYS 388 A LYS 26 1 Y 5 A ASN 389 A ASN 27 1 Y 5 A PRO 390 A PRO 28 1 Y 5 A VAL 391 A VAL 29 1 Y 5 A HIS 392 A HIS 30 1 Y 5 A PHE 393 A PHE 31 1 Y 5 A GLN 394 A GLN 32 1 Y 5 A HIS 395 A HIS 33 1 Y 5 A PHE 396 A PHE 34 1 Y 5 A SER 397 A SER 35 1 Y 5 A HIS 398 A HIS 36 1 Y 5 A PRO 399 A PRO 37 1 Y 5 A GLY 400 A GLY 38 1 Y 5 A ASP 401 A ASP 39 1 Y 5 A SER 402 A SER 40 1 Y 5 A ASP 403 A ASP 41 1 Y 5 A TYR 404 A TYR 42 1 Y 6 A GLY 363 A GLY 1 1 Y 6 A PRO 364 A PRO 2 1 Y 6 A LEU 365 A LEU 3 1 Y 6 A GLY 366 A GLY 4 1 Y 6 A SER 367 A SER 5 1 Y 6 A GLY 368 A GLY 6 1 Y 6 A SER 369 A SER 7 1 Y 6 A GLU 370 A GLU 8 1 Y 6 A GLY 371 A GLY 9 1 Y 6 A ASN 372 A ASN 10 1 Y 6 A LYS 373 A LYS 11 1 Y 6 A VAL 374 A VAL 12 1 Y 6 A LYS 375 A LYS 13 1 Y 6 A ARG 376 A ARG 14 1 Y 6 A THR 377 A THR 15 1 Y 6 A SER 378 A SER 16 1 Y 6 A CYS 379 A CYS 17 1 Y 6 A MET 380 A MET 18 1 Y 6 A TYR 381 A TYR 19 1 Y 6 A GLY 382 A GLY 20 1 Y 6 A ALA 383 A ALA 21 1 Y 6 A ASN 384 A ASN 22 1 Y 6 A CYS 385 A CYS 23 1 Y 6 A TYR 386 A TYR 24 1 Y 6 A ARG 387 A ARG 25 1 Y 6 A LYS 388 A LYS 26 1 Y 6 A ASN 389 A ASN 27 1 Y 6 A PRO 390 A PRO 28 1 Y 6 A VAL 391 A VAL 29 1 Y 6 A HIS 392 A HIS 30 1 Y 6 A PHE 393 A PHE 31 1 Y 6 A GLN 394 A GLN 32 1 Y 6 A HIS 395 A HIS 33 1 Y 6 A PHE 396 A PHE 34 1 Y 6 A SER 397 A SER 35 1 Y 6 A HIS 398 A HIS 36 1 Y 6 A PRO 399 A PRO 37 1 Y 6 A GLY 400 A GLY 38 1 Y 6 A ASP 401 A ASP 39 1 Y 6 A SER 402 A SER 40 1 Y 6 A ASP 403 A ASP 41 1 Y 6 A TYR 404 A TYR 42 1 Y 7 A GLY 363 A GLY 1 1 Y 7 A PRO 364 A PRO 2 1 Y 7 A LEU 365 A LEU 3 1 Y 7 A GLY 366 A GLY 4 1 Y 7 A SER 367 A SER 5 1 Y 7 A GLY 368 A GLY 6 1 Y 7 A SER 369 A SER 7 1 Y 7 A GLU 370 A GLU 8 1 Y 7 A GLY 371 A GLY 9 1 Y 7 A ASN 372 A ASN 10 1 Y 7 A LYS 373 A LYS 11 1 Y 7 A VAL 374 A VAL 12 1 Y 7 A LYS 375 A LYS 13 1 Y 7 A ARG 376 A ARG 14 1 Y 7 A THR 377 A THR 15 1 Y 7 A SER 378 A SER 16 1 Y 7 A CYS 379 A CYS 17 1 Y 7 A MET 380 A MET 18 1 Y 7 A TYR 381 A TYR 19 1 Y 7 A GLY 382 A GLY 20 1 Y 7 A ALA 383 A ALA 21 1 Y 7 A ASN 384 A ASN 22 1 Y 7 A CYS 385 A CYS 23 1 Y 7 A TYR 386 A TYR 24 1 Y 7 A ARG 387 A ARG 25 1 Y 7 A LYS 388 A LYS 26 1 Y 7 A ASN 389 A ASN 27 1 Y 7 A PRO 390 A PRO 28 1 Y 7 A VAL 391 A VAL 29 1 Y 7 A HIS 392 A HIS 30 1 Y 7 A PHE 393 A PHE 31 1 Y 7 A GLN 394 A GLN 32 1 Y 7 A HIS 395 A HIS 33 1 Y 7 A PHE 396 A PHE 34 1 Y 7 A SER 397 A SER 35 1 Y 7 A HIS 398 A HIS 36 1 Y 7 A PRO 399 A PRO 37 1 Y 7 A GLY 400 A GLY 38 1 Y 7 A ASP 401 A ASP 39 1 Y 7 A SER 402 A SER 40 1 Y 7 A ASP 403 A ASP 41 1 Y 7 A TYR 404 A TYR 42 1 Y 8 A GLY 363 A GLY 1 1 Y 8 A PRO 364 A PRO 2 1 Y 8 A LEU 365 A LEU 3 1 Y 8 A GLY 366 A GLY 4 1 Y 8 A SER 367 A SER 5 1 Y 8 A GLY 368 A GLY 6 1 Y 8 A SER 369 A SER 7 1 Y 8 A GLU 370 A GLU 8 1 Y 8 A GLY 371 A GLY 9 1 Y 8 A ASN 372 A ASN 10 1 Y 8 A LYS 373 A LYS 11 1 Y 8 A VAL 374 A VAL 12 1 Y 8 A LYS 375 A LYS 13 1 Y 8 A ARG 376 A ARG 14 1 Y 8 A THR 377 A THR 15 1 Y 8 A SER 378 A SER 16 1 Y 8 A CYS 379 A CYS 17 1 Y 8 A MET 380 A MET 18 1 Y 8 A TYR 381 A TYR 19 1 Y 8 A GLY 382 A GLY 20 1 Y 8 A ALA 383 A ALA 21 1 Y 8 A ASN 384 A ASN 22 1 Y 8 A CYS 385 A CYS 23 1 Y 8 A TYR 386 A TYR 24 1 Y 8 A ARG 387 A ARG 25 1 Y 8 A LYS 388 A LYS 26 1 Y 8 A ASN 389 A ASN 27 1 Y 8 A PRO 390 A PRO 28 1 Y 8 A VAL 391 A VAL 29 1 Y 8 A HIS 392 A HIS 30 1 Y 8 A PHE 393 A PHE 31 1 Y 8 A GLN 394 A GLN 32 1 Y 8 A HIS 395 A HIS 33 1 Y 8 A PHE 396 A PHE 34 1 Y 8 A SER 397 A SER 35 1 Y 8 A HIS 398 A HIS 36 1 Y 8 A PRO 399 A PRO 37 1 Y 8 A GLY 400 A GLY 38 1 Y 8 A ASP 401 A ASP 39 1 Y 8 A SER 402 A SER 40 1 Y 8 A ASP 403 A ASP 41 1 Y 8 A TYR 404 A TYR 42 1 Y 9 A GLY 363 A GLY 1 1 Y 9 A PRO 364 A PRO 2 1 Y 9 A LEU 365 A LEU 3 1 Y 9 A GLY 366 A GLY 4 1 Y 9 A SER 367 A SER 5 1 Y 9 A GLY 368 A GLY 6 1 Y 9 A SER 369 A SER 7 1 Y 9 A GLU 370 A GLU 8 1 Y 9 A GLY 371 A GLY 9 1 Y 9 A ASN 372 A ASN 10 1 Y 9 A LYS 373 A LYS 11 1 Y 9 A VAL 374 A VAL 12 1 Y 9 A LYS 375 A LYS 13 1 Y 9 A ARG 376 A ARG 14 1 Y 9 A THR 377 A THR 15 1 Y 9 A SER 378 A SER 16 1 Y 9 A CYS 379 A CYS 17 1 Y 9 A MET 380 A MET 18 1 Y 9 A TYR 381 A TYR 19 1 Y 9 A GLY 382 A GLY 20 1 Y 9 A ALA 383 A ALA 21 1 Y 9 A ASN 384 A ASN 22 1 Y 9 A CYS 385 A CYS 23 1 Y 9 A TYR 386 A TYR 24 1 Y 9 A ARG 387 A ARG 25 1 Y 9 A LYS 388 A LYS 26 1 Y 9 A ASN 389 A ASN 27 1 Y 9 A PRO 390 A PRO 28 1 Y 9 A VAL 391 A VAL 29 1 Y 9 A HIS 392 A HIS 30 1 Y 9 A PHE 393 A PHE 31 1 Y 9 A GLN 394 A GLN 32 1 Y 9 A HIS 395 A HIS 33 1 Y 9 A PHE 396 A PHE 34 1 Y 9 A SER 397 A SER 35 1 Y 9 A HIS 398 A HIS 36 1 Y 9 A PRO 399 A PRO 37 1 Y 9 A GLY 400 A GLY 38 1 Y 9 A ASP 401 A ASP 39 1 Y 9 A SER 402 A SER 40 1 Y 9 A ASP 403 A ASP 41 1 Y 9 A TYR 404 A TYR 42 1 Y 10 A GLY 363 A GLY 1 1 Y 10 A PRO 364 A PRO 2 1 Y 10 A LEU 365 A LEU 3 1 Y 10 A GLY 366 A GLY 4 1 Y 10 A SER 367 A SER 5 1 Y 10 A GLY 368 A GLY 6 1 Y 10 A SER 369 A SER 7 1 Y 10 A GLU 370 A GLU 8 1 Y 10 A GLY 371 A GLY 9 1 Y 10 A ASN 372 A ASN 10 1 Y 10 A LYS 373 A LYS 11 1 Y 10 A VAL 374 A VAL 12 1 Y 10 A LYS 375 A LYS 13 1 Y 10 A ARG 376 A ARG 14 1 Y 10 A THR 377 A THR 15 1 Y 10 A SER 378 A SER 16 1 Y 10 A CYS 379 A CYS 17 1 Y 10 A MET 380 A MET 18 1 Y 10 A TYR 381 A TYR 19 1 Y 10 A GLY 382 A GLY 20 1 Y 10 A ALA 383 A ALA 21 1 Y 10 A ASN 384 A ASN 22 1 Y 10 A CYS 385 A CYS 23 1 Y 10 A TYR 386 A TYR 24 1 Y 10 A ARG 387 A ARG 25 1 Y 10 A LYS 388 A LYS 26 1 Y 10 A ASN 389 A ASN 27 1 Y 10 A PRO 390 A PRO 28 1 Y 10 A VAL 391 A VAL 29 1 Y 10 A HIS 392 A HIS 30 1 Y 10 A PHE 393 A PHE 31 1 Y 10 A GLN 394 A GLN 32 1 Y 10 A HIS 395 A HIS 33 1 Y 10 A PHE 396 A PHE 34 1 Y 10 A SER 397 A SER 35 1 Y 10 A HIS 398 A HIS 36 1 Y 10 A PRO 399 A PRO 37 1 Y 10 A GLY 400 A GLY 38 1 Y 10 A ASP 401 A ASP 39 1 Y 10 A SER 402 A SER 40 1 Y 10 A ASP 403 A ASP 41 1 Y 10 A TYR 404 A TYR 42 1 Y 1 A VAL 407 -115.04 55.45 1 A ILE 409 -116.58 59.25 1 A GLN 412 69.35 -65.68 1 A ASP 413 -172.11 45.13 1 A THR 415 -110.38 65.62 1 A ASP 417 -115.96 53.64 1 A PRO 419 -76.47 -88.37 1 A GLU 420 175.22 105.39 1 A THR 442 -102.46 52.74 1 A ARG 446 -179.92 -44.05 1 A LEU 449 179.59 -50.36 1 A ASP 450 53.40 96.01 2 A VAL 410 -102.92 66.57 2 A ASP 413 -152.00 33.40 2 A ASP 417 70.71 48.71 2 A PRO 419 -79.25 -86.36 2 A GLU 420 173.81 107.48 2 A SER 426 -90.67 55.27 2 A THR 442 -106.26 66.11 2 A ARG 446 178.26 -42.64 2 A LEU 449 -177.10 -52.02 3 A VAL 410 -104.24 67.74 3 A GLU 414 -151.45 32.90 3 A PRO 419 -79.95 -82.66 3 A GLU 420 173.47 103.81 3 A SER 426 -94.05 55.02 3 A THR 442 66.59 75.11 3 A ARG 446 -179.71 -44.33 4 A VAL 410 -105.02 65.54 4 A GLU 414 -159.26 40.51 4 A PRO 419 -75.78 -88.46 4 A GLU 420 173.59 105.19 4 A SER 426 -93.64 47.31 4 A VAL 445 -147.38 53.38 4 A ARG 446 -178.55 -44.16 4 A ASN 447 -113.53 77.81 4 A LEU 449 -145.60 32.44 4 A ASP 450 48.72 78.40 5 A VAL 407 -107.93 53.81 5 A VAL 410 -116.48 55.47 5 A GLN 412 69.18 -66.18 5 A ASP 413 -173.46 45.70 5 A PRO 419 -72.53 -92.92 5 A GLU 420 -177.12 125.03 5 A SER 426 -101.17 56.53 5 A ASN 441 160.19 -39.23 5 A VAL 445 -149.04 54.33 5 A ARG 446 -178.26 -44.17 5 A ASN 447 -116.81 60.60 5 A LEU 449 -143.03 41.40 6 A VAL 407 -110.38 54.26 6 A ILE 409 -114.23 60.26 6 A VAL 410 -110.66 67.23 6 A GLU 414 -148.75 49.09 6 A THR 415 -105.80 67.13 6 A PRO 419 -77.68 -88.11 6 A GLU 420 174.28 118.09 6 A SER 426 -102.40 53.67 6 A ASN 441 140.16 -43.97 6 A ARG 446 178.32 -43.35 6 A ASN 447 -115.51 76.80 6 A LEU 449 -159.45 40.34 7 A ILE 409 -111.68 60.87 7 A VAL 410 -108.95 64.45 7 A GLN 412 63.36 -65.94 7 A THR 415 -110.73 67.57 7 A ASP 417 -154.88 44.15 7 A PRO 419 -77.51 -94.67 7 A GLU 420 -177.85 114.19 7 A SER 426 -98.01 53.18 7 A ASN 441 167.53 -61.81 7 A VAL 445 -149.49 47.47 7 A ARG 446 -168.65 -45.98 7 A ASP 450 51.50 89.68 8 A ILE 409 -110.59 53.06 8 A ASP 413 -162.71 -56.41 8 A ASP 417 -118.11 50.40 8 A PRO 419 -70.82 -88.00 8 A GLU 420 173.90 103.83 8 A THR 442 -100.99 66.08 8 A VAL 445 -150.68 55.47 8 A ARG 446 -178.51 -42.94 9 A VAL 407 51.69 94.76 9 A ASP 413 68.13 79.00 9 A THR 415 -149.56 51.64 9 A PRO 419 -86.66 -91.89 9 A GLU 420 -175.86 114.11 9 A SER 426 -101.77 49.65 9 A LYS 430 -117.63 -71.25 9 A ASN 431 56.03 153.65 9 A ASN 441 172.09 -48.85 9 A VAL 445 -151.33 55.58 9 A ARG 446 -177.09 -43.46 9 A ASN 447 -107.60 73.02 9 A VAL 448 -141.00 23.43 9 A LEU 449 -179.18 43.34 10 A GLU 414 -160.12 38.79 10 A THR 415 -112.15 63.72 10 A PRO 419 -72.49 -82.30 10 A GLU 420 168.62 100.41 10 A THR 442 57.47 83.51 10 A ASN 447 -108.68 67.02 10 A LEU 449 -176.96 43.06 Aprataxin and PNK-like factor (E.C.4.2.99.18) lowest energy, model 1 Second PBZ domain of human APLF protein in complex with ribofuranosyladenosine 1 N N 2 N N 3 N N 4 N N A ASN 431 A ASN 69 HELX_P A TYR 438 A TYR 76 1 2 8 covale 1.421 one A ADN 1002 C O2' ADN 1_555 A RIB 1003 D C1 RIB 1_555 metalc 2.287 A CYS 421 A SG CYS 59 1_555 A ZN 1001 B ZN ZN 1_555 metalc 2.245 A CYS 427 A SG CYS 65 1_555 A ZN 1001 B ZN ZN 1_555 metalc 1.845 A HIS 434 A NE2 HIS 72 1_555 A ZN 1001 B ZN ZN 1_555 metalc 1.937 A HIS 440 A NE2 HIS 78 1_555 A ZN 1001 B ZN ZN 1_555 LYASE ADP-ribosylation, DNA damage, DNA repair, Metal-binding, Nucleotide-binding, Nucleus, Zinc, Zinc-finger, LYASE APLF_HUMAN UNP 1 368 Q8IW19 GSEGNKVKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDDRPECPYGPSCYRKNPQHKIEYRHNTLPVRN VLDE 368 451 2KQE 368 451 Q8IW19 A 1 6 89 1 expression tag GLY 363 2KQE A Q8IW19 UNP 1 1 expression tag PRO 364 2KQE A Q8IW19 UNP 2 1 expression tag LEU 365 2KQE A Q8IW19 UNP 3 1 expression tag GLY 366 2KQE A Q8IW19 UNP 4 1 expression tag SER 367 2KQE A Q8IW19 UNP 5 1 P 1