1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Bilbille, Y. Agris, P.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C10 H13 N4 O8 P 348.206 y INOSINIC ACID RNA linking C9 H14 N3 O7 P S 339.262 4-amino-1-(5-O-phosphono-beta-D-ribofuranosyl)pyrimidine-2(1H)-thione RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking To be Published 0353 Solution structure of the tRNA-Arg-1 (ICG) ASL containg the 2-thiocytidine modification in position 32. 5458.367 RNA (5'-R(*CP*UP*CP*GP*GP*(RSP)P*UP*IP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3') 1 syn polymer no yes CUCGG(RSP)UICGAACCGAG CUCGGXUICGAACCGAG A polyribonucleotide n n n n n n n n n n n n n n n n n -4.563 1 19 A 1 A 17 -3.356 A_C1:G17_A 1 -5.841 0.092 0.609 -0.162 8.287 1 20 A 2 A 16 -2.097 A_U2:A16_A 2 -20.093 -0.330 -0.221 -0.025 25.203 1 19 A 3 A 15 -1.799 A_C3:G15_A 3 -12.216 0.773 -0.338 -0.235 10.083 1 19 A 4 A 14 -1.362 A_G4:C14_A 4 2.004 -0.374 -0.345 -0.165 -10.681 1 19 A 5 A 13 -2.686 A_G5:C13_A 5 -22.053 -0.197 0.033 -0.167 2.500 30.273 A A 1 2 8.524 A A 17 16 2.884 4.391 -0.569 -0.892 AA_C1U2:A16G17_AA 1 7.576 -14.707 29.007 -2.455 2.378 3.091 37.619 A A 2 3 4.686 A A 16 15 3.110 3.019 0.653 -0.103 AA_U2C3:G15A16_AA 2 -0.127 0.197 37.501 -0.532 -1.028 2.798 28.389 A A 3 4 23.328 A A 15 14 3.795 11.138 0.416 -1.868 AA_C3G4:C14G15_AA 3 1.630 -3.413 26.104 -6.508 -0.453 5.326 36.061 A A 4 5 -12.400 A A 14 13 5.282 -7.612 -0.160 -0.943 AA_G4G5:C13C14_AA 4 3.360 -5.475 35.119 0.251 1.042 repository Initial release Version format compliance 1 0 2010-12-01 1 1 2011-07-13 BMRB Y RCSB 2009-12-22 REL REL structures with the lowest energy 100 10 2D 1H-1H NOESY 2D 1H-1H NOESY 2D DQF-COSY 2D 1H-1H COSY 2D 1H-1H TOCSY 2D 1H-13C HSQC 2D 1H-31P HETCOR 0.8 mM 0.8 mM 20 6.8 ambient 298 K simulated annealing 1 closest to the average 0.8 mM RNA (5'-R(*CP*UP*CP*GP*GP*(N)P*UP*IP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3')-1, 90% H2O/10% D2O 90% H2O/10% D2O 0.8 mM RNA (5'-R(*CP*UP*CP*GP*GP*(N)P*UP*IP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3')-2, 100% D2O 100% D2O Bruker Biospin collection xwinnmr Bruker Biospin collection TOPSPIN Varian collection VNMRJ Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRDraw Goddard chemical shift assignment SPARKY Goddard data analysis SPARKY Goddard peak picking SPARKY Brunger, Adams, Clore, Gros, Nilges and Read structure solution CNS 1.21 Koradi, Billeter and Wuthrich data analysis Molmol Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS 1.21 600 Varian INOVA Varian INOVA 500 Bruker Avance Bruker Avance C 1 n 1 C 1 A U 2 n 2 U 2 A C 3 n 3 C 3 A G 4 n 4 G 4 A G 5 n 5 G 5 A RSP 6 n 6 RSP 6 A U 7 n 7 U 7 A I 8 n 8 I 8 A C 9 n 9 C 9 A G 10 n 10 G 10 A A 11 n 11 A 11 A A 12 n 12 A 12 A C 13 n 13 C 13 A C 14 n 14 C 14 A G 15 n 15 G 15 A A 16 n 16 A 16 A G 17 n 17 G 17 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 3 A A H4' O5' C G 9 10 1.57 7 A A H4' O5' C G 9 10 1.54 9 A A H4' O5' C G 9 10 1.59 5'-R(*CP*UP*CP*GP*GP*(RSP)P*UP*IP*CP*GP*AP*AP*CP*CP*GP*AP*G)-3' Solution structure of the E. coli tRNA-Arg1 (ICG) ASL containing the 2-thiocytidine modification 1 N N covale 1.609 A G 5 A O3' G 5 1_555 A RSP 6 A P RSP 6 1_555 covale 1.609 A RSP 6 A O3' RSP 6 1_555 A U 7 A P U 7 1_555 hydrog WATSON-CRICK A C 1 A N3 C 1 1_555 A G 17 A N1 G 17 1_555 hydrog WATSON-CRICK A C 1 A N4 C 1 1_555 A G 17 A O6 G 17 1_555 hydrog WATSON-CRICK A C 1 A O2 C 1 1_555 A G 17 A N2 G 17 1_555 hydrog WATSON-CRICK A U 2 A N3 U 2 1_555 A A 16 A N1 A 16 1_555 hydrog WATSON-CRICK A U 2 A O4 U 2 1_555 A A 16 A N6 A 16 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 15 A N1 G 15 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 15 A O6 G 15 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 15 A N2 G 15 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 14 A N3 C 14 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 14 A O2 C 14 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 14 A N4 C 14 1_555 hydrog WATSON-CRICK A G 5 A N1 G 5 1_555 A C 13 A N3 C 13 1_555 hydrog WATSON-CRICK A G 5 A N2 G 5 1_555 A C 13 A O2 C 13 1_555 hydrog WATSON-CRICK A G 5 A O6 G 5 1_555 A C 13 A N4 C 13 1_555 RNA RNA, tRNA, 2-thiocytidine, modification, ASL 2KRV PDB 1 2KRV CUCGGXUICGAACCGAG 1 17 2KRV 1 17 2KRV A 1 1 17