1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Bilbille, Y. Agris, P.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 n PSEUDOURIDINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N N N 112 N C N 113 N N N 114 N C N 115 N C N 116 N C N 117 N O N 118 N O N 119 S C N 120 R C N 121 N O N 122 S C N 123 R C N 124 N O N 125 N O N 126 N C N 127 N O N 128 N P N 129 N O N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N P N 147 N O N 148 N O N 149 N O N 150 N C N 151 R C N 152 N O N 153 S C N 154 N O N 155 R C N 156 N O N 157 R C N 158 N N N 159 N C N 160 N O N 161 N N N 162 N C N 163 N O N 164 N C N 165 N C N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N doub N 184 N sing N 185 N sing To be Published 0353 The Human Mitochondrial tRNAMet ASL structure solved by Nuclear Magnetic Resonance 10.2210/pdb2krz/pdb pdb_00002krz 10.13018/BMR16655 5377.269 RNA (5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*CP*AP*UP*AP*CP*CP*CP*CP*GP*A)-3') 1 syn polymer no yes (PSU)CGGGCCCAUACCCCGA UCGGGCCCAUACCCCGA A polyribonucleotide n n n n n n n n n n n n n n n n n 15.958 1 21 A 1 A 17 -10.163 A_PSU1:A17_A 1 -31.727 -0.674 -1.397 -0.027 -21.902 1 19 A 2 A 16 -3.238 A_C2:G16_A 2 -2.886 0.425 0.783 -0.237 5.133 1 19 A 3 A 15 -4.004 A_G3:C15_A 3 -11.144 -0.448 0.422 -0.216 12.889 1 19 A 4 A 14 -5.225 A_G4:C14_A 4 -17.302 -0.696 0.321 -0.326 -2.941 1 19 A 5 A 13 -4.775 A_G5:C13_A 5 -5.146 0.412 0.210 0.029 -27.079 A 6 A 12 -13.798 A_C6:C12_A 6 27.400 4.502 1.262 -1.479 -21.653 A 9 A 11 -24.954 A_A9:A11_A 7 -25.324 -0.029 -2.325 2.983 3.762 49.174 A A 1 2 18.172 A A 17 16 4.471 14.615 -0.647 -1.678 AA_PSU1C2:G16A17_AA 1 -17.326 21.543 43.930 -3.488 -0.967 2.280 29.303 A A 2 3 11.275 A A 16 15 2.547 5.660 -0.620 -0.788 AA_C2G3:C15G16_AA 2 2.881 -5.738 28.621 -2.471 1.690 2.676 32.135 A A 3 4 21.718 A A 15 14 3.127 11.755 0.416 -0.711 AA_G3G4:C14C15_AA 3 0.862 -1.592 29.949 -3.223 -0.609 2.931 45.986 A A 4 5 33.219 A A 14 13 3.954 24.713 0.586 -0.879 AA_G4G5:C13C14_AA 4 -0.128 0.173 39.088 -3.576 -0.762 3.596 49.344 A A 5 6 20.281 A A 13 12 4.428 16.627 -0.414 -1.945 AA_G5C6:C12C13_AA 5 -3.273 3.992 46.515 -3.901 0.187 -4.354 169.246 A A 6 9 58.886 A A 12 11 -2.744 114.864 -4.952 0.114 AA_C6A9:A11C12_AA 6 117.127 -60.046 95.027 1.020 1.505 pdbx_database_status pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn database_2 pdbx_database_status chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Data collection Derived calculations Other Database references Other Data collection Database references 1 0 2010-08-18 1 1 2011-07-13 1 2 2020-02-26 1 3 2023-06-14 1 4 2024-05-08 _pdbx_database_status.status_code_cs _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _database_2.pdbx_DOI BMRB Y RCSB 2009-12-23 REL REL REL REL structures with the lowest energy 100 10 2D 1H-1H NOESY 2D 1H-1H NOESY 2D DQF-COSY 2D 1H-1H COSY 2D 1H-1H TOCSY 2D 1H-13C HSQC 2D 1H-31P HETCOR 1.2 mM 1.2 mM 20 6.8 ambient 298 K simulated annealing 1 lowest energy 1.2 mM RNA (5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*CP*AP*UP*AP*CP*CP*CP*CP*GP*A)-3')-1, 90% H2O/10% D2O 90% H2O/10% D2O 1.2 mM RNA (5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*CP*AP*UP*AP*CP*CP*CP*CP*GP*A)-3')-2, 100% D2O 100% D2O Bruker Biospin collection XwinNMR Bruker Biospin collection TopSpin Varian collection VnmrJ Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax data analysis NMRDraw Goddard chemical shift assignment Sparky Goddard data analysis Sparky Goddard peak picking Sparky Brunger, Adams, Clore, Gros, Nilges and Read structure solution CNS Koradi, Billeter and Wuthrich data analysis MOLMOL Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS 600 Varian INOVA Varian INOVA 500 Bruker AVANCE Bruker Avance PSU 1 n 1 PSU 1 A C 2 n 2 C 2 A G 3 n 3 G 3 A G 4 n 4 G 4 A G 5 n 5 G 5 A C 6 n 6 C 6 A C 7 n 7 C 7 A C 8 n 8 C 8 A A 9 n 9 A 9 A U 10 n 10 U 10 A A 11 n 11 A 11 A C 12 n 12 C 12 A C 13 n 13 C 13 A C 14 n 14 C 14 A C 15 n 15 C 15 A G 16 n 16 G 16 A A 17 n 17 A 17 A author_defined_assembly 1 monomeric A PSU 1 PSEUDOURIDINE-5'-MONOPHOSPHATE A PSU 1 U 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 Solution structure of the Human Mitochondrial tRNAMet 1 N N covale 1.610 both A PSU 1 A O3' PSU 1 1_555 A C 2 A P C 2 1_555 hydrog REVERSED WATSON-CRICK A PSU 1 A N3 PSU 1 1_555 A A 17 A N1 A 17 1_555 hydrog REVERSED WATSON-CRICK A PSU 1 A O2 PSU 1 1_555 A A 17 A N6 A 17 1_555 hydrog WATSON-CRICK A C 2 A N3 C 2 1_555 A G 16 A N1 G 16 1_555 hydrog WATSON-CRICK A C 2 A N4 C 2 1_555 A G 16 A O6 G 16 1_555 hydrog WATSON-CRICK A C 2 A O2 C 2 1_555 A G 16 A N2 G 16 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 A C 15 A N3 C 15 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 A C 15 A O2 C 15 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 A C 15 A N4 C 15 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 14 A N3 C 14 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 14 A O2 C 14 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 14 A N4 C 14 1_555 hydrog WATSON-CRICK A G 5 A N1 G 5 1_555 A C 13 A N3 C 13 1_555 hydrog WATSON-CRICK A G 5 A N2 G 5 1_555 A C 13 A O2 C 13 1_555 hydrog WATSON-CRICK A G 5 A O6 G 5 1_555 A C 13 A N4 C 13 1_555 hydrog C-C MISPAIR A C 6 A O2 C 6 1_555 A C 12 A N4 C 12 1_555 hydrog A-A MISPAIR A A 9 A N6 A 9 1_555 A A 11 A N7 A 11 1_555 RNA RNA, tRNA, Methionine, ASL, modification 2KRZ PDB 1 2KRZ UCGGGCCCAUACCCCGA 1 17 2KRZ 1 17 2KRZ A 1 1 17