1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Vuletich, D.A.
Falzone, C.J.
Lecomte, J.T.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME B/C
HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX CONTAINING FE)
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
49
7000
7011
10.1021/bi100463d
20669934
Functional and structural characterization of the 2/2 hemoglobin from Synechococcus sp. PCC 7002.
2010
NE
BIOMOL.NMR ASSIGN.
1874-2718
3
211
214
(1)H, (15)N, and (13)C resonance assignments of the 2/2 hemoglobin from the cyanobacterium Synechococcus sp. PCC 7002 in the ferric bis-histidine state
2009
13742.418
Cyanoglobin
1
man
polymer
618.503
HEME B/C
1
syn
non-polymer
no
no
ASLYEKLGGAAAVDLAVEKFYGKVLADERVNRFFVNTDMAKQKQHQKDFMTYAFGGTDRFPGRSMRAAHQDLVENAGLTD
VHFDAIAENLVLTLQELNVSQDLIDEVVTIVGSVQHRNDVLNR
ASLYEKLGGAAAVDLAVEKFYGKVLADERVNRFFVNTDMAKQKQHQKDFMTYAFGGTDRFPGRSMRAAHQDLVENAGLTD
VHFDAIAENLVLTLQELNVSQDLIDEVVTIVGSVQHRNDVLNR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Agmenellum quadruplicatum
PCC 7002
sample
glbN, SYNPCC7002_A1621
32049
Synechococcus sp.
562
Escherichia coli
BL21(DE3)
pET3c
database_2
pdbx_database_status
pdbx_nmr_software
struct_conn
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
2010-02-09
1
1
2011-07-13
1
2
2020-02-26
_pdbx_database_status.status_code_cs
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
chemical shifts
BMRB
Y
RCSB
2010-01-02
REL
REL
REL
HEB
HEME B/C
structures with the least restraint violations
30
16
3D 1H-15N NOESY
3D 1H-13C NOESY
2D 1H-1H NOESY
2D 1H-1H NOESY
3D HNHA
1-2
mM
1-4
mM
1-2
mM
[U-100% 15N]
0.6-1.4
mM
[U-100% 13C; U-100% 15N]
0.025
7.2
ambient
298
K
100 conformers, 30 conformers from 3/100 lowest energy DGSA refined conformers
DGSA-distance geometry simulated annealing, torsion angle dynamics
1
minimized average
1-2 mM holoprotein, 90% H2O/10% D2O
90% H2O/10% D2O
1-4 mM holoprotein, 100% D2O
100% D2O
1-2 mM [U-100% 15N] holoprotein, 90% H2O/10% D2O
90% H2O/10% D2O
0.6-1.4 mM [U-100% 13C; U-100% 15N] holoprotein, 90% H2O/10% D2O
90% H2O/10% D2O
Schwieters, Kuszewski, Tjandra and Clore
structure solution
X-PLOR NIH
2.23
Schwieters, Kuszewski, Tjandra and Clore
refinement
X-PLOR NIH
2.23
600
Bruker
DRX
Bruker DRX
HEB
125
2
HEB
HEB
125
A
ALA
2
n
1
ALA
2
A
SER
3
n
2
SER
3
A
LEU
4
n
3
LEU
4
A
TYR
5
n
4
TYR
5
A
GLU
6
n
5
GLU
6
A
LYS
7
n
6
LYS
7
A
LEU
8
n
7
LEU
8
A
GLY
9
n
8
GLY
9
A
GLY
10
n
9
GLY
10
A
ALA
11
n
10
ALA
11
A
ALA
12
n
11
ALA
12
A
ALA
13
n
12
ALA
13
A
VAL
14
n
13
VAL
14
A
ASP
15
n
14
ASP
15
A
LEU
16
n
15
LEU
16
A
ALA
17
n
16
ALA
17
A
VAL
18
n
17
VAL
18
A
GLU
19
n
18
GLU
19
A
LYS
20
n
19
LYS
20
A
PHE
21
n
20
PHE
21
A
TYR
22
n
21
TYR
22
A
GLY
23
n
22
GLY
23
A
LYS
24
n
23
LYS
24
A
VAL
25
n
24
VAL
25
A
LEU
26
n
25
LEU
26
A
ALA
27
n
26
ALA
27
A
ASP
28
n
27
ASP
28
A
GLU
29
n
28
GLU
29
A
ARG
30
n
29
ARG
30
A
VAL
31
n
30
VAL
31
A
ASN
32
n
31
ASN
32
A
ARG
33
n
32
ARG
33
A
PHE
34
n
33
PHE
34
A
PHE
35
n
34
PHE
35
A
VAL
36
n
35
VAL
36
A
ASN
37
n
36
ASN
37
A
THR
38
n
37
THR
38
A
ASP
39
n
38
ASP
39
A
MET
40
n
39
MET
40
A
ALA
41
n
40
ALA
41
A
LYS
42
n
41
LYS
42
A
GLN
43
n
42
GLN
43
A
LYS
44
n
43
LYS
44
A
GLN
45
n
44
GLN
45
A
HIS
46
n
45
HIS
46
A
GLN
47
n
46
GLN
47
A
LYS
48
n
47
LYS
48
A
ASP
49
n
48
ASP
49
A
PHE
50
n
49
PHE
50
A
MET
51
n
50
MET
51
A
THR
52
n
51
THR
52
A
TYR
53
n
52
TYR
53
A
ALA
54
n
53
ALA
54
A
PHE
55
n
54
PHE
55
A
GLY
56
n
55
GLY
56
A
GLY
57
n
56
GLY
57
A
THR
58
n
57
THR
58
A
ASP
59
n
58
ASP
59
A
ARG
60
n
59
ARG
60
A
PHE
61
n
60
PHE
61
A
PRO
62
n
61
PRO
62
A
GLY
63
n
62
GLY
63
A
ARG
64
n
63
ARG
64
A
SER
65
n
64
SER
65
A
MET
66
n
65
MET
66
A
ARG
67
n
66
ARG
67
A
ALA
68
n
67
ALA
68
A
ALA
69
n
68
ALA
69
A
HIS
70
n
69
HIS
70
A
GLN
71
n
70
GLN
71
A
ASP
72
n
71
ASP
72
A
LEU
73
n
72
LEU
73
A
VAL
74
n
73
VAL
74
A
GLU
75
n
74
GLU
75
A
ASN
76
n
75
ASN
76
A
ALA
77
n
76
ALA
77
A
GLY
78
n
77
GLY
78
A
LEU
79
n
78
LEU
79
A
THR
80
n
79
THR
80
A
ASP
81
n
80
ASP
81
A
VAL
82
n
81
VAL
82
A
HIS
83
n
82
HIS
83
A
PHE
84
n
83
PHE
84
A
ASP
85
n
84
ASP
85
A
ALA
86
n
85
ALA
86
A
ILE
87
n
86
ILE
87
A
ALA
88
n
87
ALA
88
A
GLU
89
n
88
GLU
89
A
ASN
90
n
89
ASN
90
A
LEU
91
n
90
LEU
91
A
VAL
92
n
91
VAL
92
A
LEU
93
n
92
LEU
93
A
THR
94
n
93
THR
94
A
LEU
95
n
94
LEU
95
A
GLN
96
n
95
GLN
96
A
GLU
97
n
96
GLU
97
A
LEU
98
n
97
LEU
98
A
ASN
99
n
98
ASN
99
A
VAL
100
n
99
VAL
100
A
SER
101
n
100
SER
101
A
GLN
102
n
101
GLN
102
A
ASP
103
n
102
ASP
103
A
LEU
104
n
103
LEU
104
A
ILE
105
n
104
ILE
105
A
ASP
106
n
105
ASP
106
A
GLU
107
n
106
GLU
107
A
VAL
108
n
107
VAL
108
A
VAL
109
n
108
VAL
109
A
THR
110
n
109
THR
110
A
ILE
111
n
110
ILE
111
A
VAL
112
n
111
VAL
112
A
GLY
113
n
112
GLY
113
A
SER
114
n
113
SER
114
A
VAL
115
n
114
VAL
115
A
GLN
116
n
115
GLN
116
A
HIS
117
n
116
HIS
117
A
ARG
118
n
117
ARG
118
A
ASN
119
n
118
ASN
119
A
ASP
120
n
119
ASP
120
A
VAL
121
n
120
VAL
121
A
LEU
122
n
121
LEU
122
A
ASN
123
n
122
ASN
123
A
ARG
124
n
123
ARG
124
A
author_defined_assembly
1
monomeric
A
HIS
46
A
NE2
HIS
45
1_555
A
HEB
125
B
FE
HEB
1_555
A
HEB
125
B
NA
HEB
1_555
102.3
A
HIS
46
A
NE2
HIS
45
1_555
A
HEB
125
B
FE
HEB
1_555
A
HEB
125
B
NB
HEB
1_555
101.9
A
HEB
125
B
NA
HEB
1_555
A
HEB
125
B
FE
HEB
1_555
A
HEB
125
B
NB
HEB
1_555
90.1
A
HIS
46
A
NE2
HIS
45
1_555
A
HEB
125
B
FE
HEB
1_555
A
HEB
125
B
NC
HEB
1_555
77.6
A
HEB
125
B
NA
HEB
1_555
A
HEB
125
B
FE
HEB
1_555
A
HEB
125
B
NC
HEB
1_555
179.9
A
HEB
125
B
NB
HEB
1_555
A
HEB
125
B
FE
HEB
1_555
A
HEB
125
B
NC
HEB
1_555
89.9
A
HIS
46
A
NE2
HIS
45
1_555
A
HEB
125
B
FE
HEB
1_555
A
HEB
125
B
ND
HEB
1_555
77.9
A
HEB
125
B
NA
HEB
1_555
A
HEB
125
B
FE
HEB
1_555
A
HEB
125
B
ND
HEB
1_555
90.0
A
HEB
125
B
NB
HEB
1_555
A
HEB
125
B
FE
HEB
1_555
A
HEB
125
B
ND
HEB
1_555
179.8
A
HEB
125
B
NC
HEB
1_555
A
HEB
125
B
FE
HEB
1_555
A
HEB
125
B
ND
HEB
1_555
89.9
A
HIS
46
A
NE2
HIS
45
1_555
A
HEB
125
B
FE
HEB
1_555
A
HIS
70
A
NE2
HIS
69
1_555
154.4
A
HEB
125
B
NA
HEB
1_555
A
HEB
125
B
FE
HEB
1_555
A
HIS
70
A
NE2
HIS
69
1_555
100.2
A
HEB
125
B
NB
HEB
1_555
A
HEB
125
B
FE
HEB
1_555
A
HIS
70
A
NE2
HIS
69
1_555
90.0
A
HEB
125
B
NC
HEB
1_555
A
HEB
125
B
FE
HEB
1_555
A
HIS
70
A
NE2
HIS
69
1_555
79.8
A
HEB
125
B
ND
HEB
1_555
A
HEB
125
B
FE
HEB
1_555
A
HIS
70
A
NE2
HIS
69
1_555
90.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
6
A
A
O
H
TYR
GLY
5
9
1.59
10
A
A
H2
H
ALA
SER
2
3
1.27
13
A
A
O
H
THR
PHE
58
61
1.59
1
A
PHE
35
-79.70
25.61
1
A
TYR
53
-49.88
-17.91
1
A
THR
58
-78.62
31.06
1
A
PHE
61
-159.64
59.47
1
A
PRO
62
-74.29
34.54
1
A
ARG
64
61.00
-73.63
1
A
VAL
82
-44.99
-17.57
1
A
SER
101
-45.58
160.82
1
A
ASN
123
54.19
95.31
2
A
ASP
59
25.91
39.05
2
A
ARG
60
53.36
115.09
2
A
SER
65
92.30
119.89
3
A
ARG
60
-95.21
-132.98
3
A
PHE
61
35.13
72.20
3
A
ARG
64
36.89
-153.58
4
A
SER
65
-176.44
44.97
4
A
ASN
76
-90.30
-60.89
5
A
ASP
59
-72.54
21.30
5
A
ARG
60
61.40
94.26
5
A
SER
65
-101.62
77.93
5
A
ASN
76
-91.31
-61.38
6
A
SER
65
-173.16
36.11
6
A
SER
114
-38.62
112.72
7
A
ARG
60
71.24
-4.43
7
A
ARG
64
-120.23
-105.85
7
A
SER
65
51.68
6.27
7
A
ASN
76
-92.77
-61.76
8
A
ARG
64
34.83
77.70
8
A
SER
65
168.09
-35.19
9
A
ARG
60
-168.86
80.80
9
A
ARG
64
-97.66
-68.78
10
A
ARG
60
-159.57
82.56
10
A
PHE
61
-135.26
-63.65
10
A
PRO
62
-49.63
-13.91
10
A
SER
65
34.81
88.11
11
A
ARG
60
179.48
54.40
11
A
ARG
64
67.60
-130.24
11
A
ASN
76
-95.24
-61.81
12
A
ARG
60
58.49
-160.88
12
A
ARG
64
-116.02
-98.02
12
A
SER
65
34.99
26.79
12
A
ASN
76
-92.04
-60.55
13
A
ASP
59
37.14
-110.43
13
A
PRO
62
-47.50
-16.79
13
A
SER
65
151.79
-8.65
13
A
ASN
76
-91.50
-61.79
14
A
ASP
59
34.44
-97.72
14
A
PRO
62
-35.66
141.04
15
A
ARG
60
31.27
79.92
15
A
ARG
64
-99.02
-66.38
15
A
ASN
76
-92.18
-61.26
16
A
ASP
59
33.66
-87.80
16
A
ARG
60
-168.93
-42.29
16
A
PHE
61
56.02
155.92
16
A
ASN
76
-92.33
-61.30
Cyanoglobin
minimized average, model 1
minimized average
Solution structure of Synechococcus sp. PCC 7002 hemoglobin
1
N
N
2
N
N
A
SER
3
A
SER
2
HELX_P
A
GLY
9
A
GLY
8
1
1
7
A
ALA
11
A
ALA
10
HELX_P
A
ASP
28
A
ASP
27
1
2
18
A
ASP
28
A
ASP
27
HELX_P
A
ARG
33
A
ARG
32
1
3
6
A
PHE
34
A
PHE
33
HELX_P
A
ASN
37
A
ASN
36
5
4
4
A
ASP
39
A
ASP
38
HELX_P
A
PHE
55
A
PHE
54
1
5
17
A
ARG
64
A
ARG
63
HELX_P
A
ALA
77
A
ALA
76
1
6
14
A
THR
80
A
THR
79
HELX_P
A
LEU
98
A
LEU
97
1
7
19
A
SER
101
A
SER
100
HELX_P
A
GLY
113
A
GLY
112
1
8
13
A
SER
114
A
SER
113
HELX_P
A
ASN
123
A
ASN
122
1
9
10
metalc
2.256
A
HIS
46
A
NE2
HIS
45
1_555
A
HEB
125
B
FE
HEB
1_555
metalc
2.256
A
HIS
70
A
NE2
HIS
69
1_555
A
HEB
125
B
FE
HEB
1_555
covale
1.495
none
A
HIS
117
A
NE2
HIS
116
1_555
A
HEB
125
B
CAB
HEB
1_555
UNKNOWN FUNCTION
hemeprotein, 2/2 hemoglobin, GlbN, trHbN, UNKNOWN FUNCTION
Q8RT58_SYNP2
UNP
1
2
Q8RT58
ASLYEKLGGAAAVDLAVEKFYGKVLADERVNRFFVNTDMAKQKQHQKDFMTYAFGGTDRFPGRSMRAAHQDLVENAGLTD
VHFDAIAENLVLTLQELNVSQDLIDEVVTIVGSVQHRNDVLNR
2
124
2KSC
2
124
Q8RT58
A
1
1
123
BINDING SITE FOR RESIDUE HEB A 125
Software
8
A
THR
38
A
THR
37
8
1_555
A
HIS
46
A
HIS
45
8
1_555
A
PHE
50
A
PHE
49
8
1_555
A
TYR
53
A
TYR
52
8
1_555
A
MET
66
A
MET
65
8
1_555
A
HIS
70
A
HIS
69
8
1_555
A
LEU
73
A
LEU
72
8
1_555
A
HIS
117
A
HIS
116
8
1_555
1
P 1