1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Ilc, G. Giachin, G. Jaremko, M. Jaremko, L. Zhukov, I. Plavec, J. Legname, G. Benetti, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Plos One 1932-6203 5 e11715 e11715 10.1371/journal.pone.0011715 20661422 NMR structure of the human prion protein with the pathological Q212P mutation reveals unique structural features. 2010 10.2210/pdb2kun/pdb pdb_00002kun 16966.865 Major prion protein UNP residues 90-231 Q212P 1 man polymer PrP, PrP27-30, PrP33-35C, ASCR no no GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEY SNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEPMCITQYERESQAYYQRGSSHHHHHH GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEY SNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEPMCITQYERESQAYYQRGSSHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample PRNP, PRIP, PRP 9606 Homo sapiens 562 Escherichia coli pET-11a vector database_2 pdbx_database_status pdbx_nmr_software struct_ref_seq_dif database_2 struct_ref_seq_dif pdbx_database_status repository Initial release Version format compliance Data collection Database references Other Database references Other 1 0 2010-08-25 1 1 2011-07-13 1 2 2020-02-26 1 3 2021-11-10 1 4 2023-06-14 _pdbx_database_status.status_code_cs _pdbx_nmr_software.name _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _pdbx_database_status.status_code_nmr_data BMRB Y PDBJ 2010-02-23 REL REL REL REL structures with the lowest energy 200 20 5 2D 1H-15N HSQC 3D HNCO 3D HNCA 3D CBCA(CO)NH 3D HNCACB 3D HN(CO)CA 3D 1H-15N NOESY 3D HBHA(CO)NH 3D 1H-13C NOESY 3D CCH-TOCSY 1.0 mM [U-98% 13C; U-98% 15N] 1.0 mM [U-98% 13C; U-98% 15N] 150 NaCl 5.5 ambient 298 K 150 NaCl ambient 298 K torsion angle dynamics, simulated annealing 1 closest to the average 1.0 mM [U-98% 13C; U-98% 15N] PrP(Q212P)-1, 90% H2O/10% D2O 90% H2O/10% D2O 1.0 mM [U-98% 13C; U-98% 15N] PrP(Q212P)-2, 100% D2O 100% D2O Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Goddard chemical shift assignment Sparky Goddard data analysis Sparky Goddard peak picking Sparky Guntert, Mumenthaler and Wuthrich structure solution CYANA Brunger, Adams, Clore, Gros, Nilges and Read structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS Keller and Wuthrich chemical shift assignment CARA 800 Varian Uniform NMR System Varian Uniform NMR System 700 Varian Uniform NMR System Varian Uniform NMR System GLY 90 n 1 GLY 90 A GLN 91 n 2 GLN 91 A GLY 92 n 3 GLY 92 A GLY 93 n 4 GLY 93 A GLY 94 n 5 GLY 94 A THR 95 n 6 THR 95 A HIS 96 n 7 HIS 96 A SER 97 n 8 SER 97 A GLN 98 n 9 GLN 98 A TRP 99 n 10 TRP 99 A ASN 100 n 11 ASN 100 A LYS 101 n 12 LYS 101 A PRO 102 n 13 PRO 102 A SER 103 n 14 SER 103 A LYS 104 n 15 LYS 104 A PRO 105 n 16 PRO 105 A LYS 106 n 17 LYS 106 A THR 107 n 18 THR 107 A ASN 108 n 19 ASN 108 A MET 109 n 20 MET 109 A LYS 110 n 21 LYS 110 A HIS 111 n 22 HIS 111 A MET 112 n 23 MET 112 A ALA 113 n 24 ALA 113 A GLY 114 n 25 GLY 114 A ALA 115 n 26 ALA 115 A ALA 116 n 27 ALA 116 A ALA 117 n 28 ALA 117 A ALA 118 n 29 ALA 118 A GLY 119 n 30 GLY 119 A ALA 120 n 31 ALA 120 A VAL 121 n 32 VAL 121 A VAL 122 n 33 VAL 122 A GLY 123 n 34 GLY 123 A GLY 124 n 35 GLY 124 A LEU 125 n 36 LEU 125 A GLY 126 n 37 GLY 126 A GLY 127 n 38 GLY 127 A TYR 128 n 39 TYR 128 A MET 129 n 40 MET 129 A LEU 130 n 41 LEU 130 A GLY 131 n 42 GLY 131 A SER 132 n 43 SER 132 A ALA 133 n 44 ALA 133 A MET 134 n 45 MET 134 A SER 135 n 46 SER 135 A ARG 136 n 47 ARG 136 A PRO 137 n 48 PRO 137 A ILE 138 n 49 ILE 138 A ILE 139 n 50 ILE 139 A HIS 140 n 51 HIS 140 A PHE 141 n 52 PHE 141 A GLY 142 n 53 GLY 142 A SER 143 n 54 SER 143 A ASP 144 n 55 ASP 144 A TYR 145 n 56 TYR 145 A GLU 146 n 57 GLU 146 A ASP 147 n 58 ASP 147 A ARG 148 n 59 ARG 148 A TYR 149 n 60 TYR 149 A TYR 150 n 61 TYR 150 A ARG 151 n 62 ARG 151 A GLU 152 n 63 GLU 152 A ASN 153 n 64 ASN 153 A MET 154 n 65 MET 154 A HIS 155 n 66 HIS 155 A ARG 156 n 67 ARG 156 A TYR 157 n 68 TYR 157 A PRO 158 n 69 PRO 158 A ASN 159 n 70 ASN 159 A GLN 160 n 71 GLN 160 A VAL 161 n 72 VAL 161 A TYR 162 n 73 TYR 162 A TYR 163 n 74 TYR 163 A ARG 164 n 75 ARG 164 A PRO 165 n 76 PRO 165 A MET 166 n 77 MET 166 A ASP 167 n 78 ASP 167 A GLU 168 n 79 GLU 168 A TYR 169 n 80 TYR 169 A SER 170 n 81 SER 170 A ASN 171 n 82 ASN 171 A GLN 172 n 83 GLN 172 A ASN 173 n 84 ASN 173 A ASN 174 n 85 ASN 174 A PHE 175 n 86 PHE 175 A VAL 176 n 87 VAL 176 A HIS 177 n 88 HIS 177 A ASP 178 n 89 ASP 178 A CYS 179 n 90 CYS 179 A VAL 180 n 91 VAL 180 A ASN 181 n 92 ASN 181 A ILE 182 n 93 ILE 182 A THR 183 n 94 THR 183 A ILE 184 n 95 ILE 184 A LYS 185 n 96 LYS 185 A GLN 186 n 97 GLN 186 A HIS 187 n 98 HIS 187 A THR 188 n 99 THR 188 A VAL 189 n 100 VAL 189 A THR 190 n 101 THR 190 A THR 191 n 102 THR 191 A THR 192 n 103 THR 192 A THR 193 n 104 THR 193 A LYS 194 n 105 LYS 194 A GLY 195 n 106 GLY 195 A GLU 196 n 107 GLU 196 A ASN 197 n 108 ASN 197 A PHE 198 n 109 PHE 198 A THR 199 n 110 THR 199 A GLU 200 n 111 GLU 200 A THR 201 n 112 THR 201 A ASP 202 n 113 ASP 202 A VAL 203 n 114 VAL 203 A LYS 204 n 115 LYS 204 A MET 205 n 116 MET 205 A MET 206 n 117 MET 206 A GLU 207 n 118 GLU 207 A ARG 208 n 119 ARG 208 A VAL 209 n 120 VAL 209 A VAL 210 n 121 VAL 210 A GLU 211 n 122 GLU 211 A PRO 212 n 123 PRO 212 A MET 213 n 124 MET 213 A CYS 214 n 125 CYS 214 A ILE 215 n 126 ILE 215 A THR 216 n 127 THR 216 A GLN 217 n 128 GLN 217 A TYR 218 n 129 TYR 218 A GLU 219 n 130 GLU 219 A ARG 220 n 131 ARG 220 A GLU 221 n 132 GLU 221 A SER 222 n 133 SER 222 A GLN 223 n 134 GLN 223 A ALA 224 n 135 ALA 224 A TYR 225 n 136 TYR 225 A TYR 226 n 137 TYR 226 A GLN 227 n 138 GLN 227 A ARG 228 n 139 ARG 228 A GLY 229 n 140 GLY 229 A SER 230 n 141 SER 230 A SER 231 n 142 SER 231 A HIS 232 n 143 HIS 232 A HIS 233 n 144 HIS 233 A HIS 234 n 145 HIS 234 A HIS 235 n 146 HIS 235 A HIS 236 n 147 HIS 236 A HIS 237 n 148 HIS 237 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N MET 129 A N MET 40 A O TYR 163 A O TYR 74 1 7.25 1.10 114.20 121.45 A A A CA CB SG CYS CYS CYS 179 179 179 N 2 7.13 1.10 114.20 121.33 A A A CA CB SG CYS CYS CYS 179 179 179 N 3 6.80 1.10 114.20 121.00 A A A CA CB SG CYS CYS CYS 179 179 179 N 4 3.63 0.50 120.30 123.93 A A A NE CZ NH1 ARG ARG ARG 148 148 148 N 4 7.56 1.10 114.20 121.76 A A A CA CB SG CYS CYS CYS 179 179 179 N 5 3.02 0.50 120.30 123.32 A A A NE CZ NH1 ARG ARG ARG 164 164 164 N 5 7.35 1.10 114.20 121.55 A A A CA CB SG CYS CYS CYS 179 179 179 N 6 6.79 1.10 114.20 120.99 A A A CA CB SG CYS CYS CYS 179 179 179 N 7 7.36 1.10 114.20 121.56 A A A CA CB SG CYS CYS CYS 179 179 179 N 9 7.73 1.10 114.20 121.93 A A A CA CB SG CYS CYS CYS 179 179 179 N 10 6.94 1.10 114.20 121.14 A A A CA CB SG CYS CYS CYS 179 179 179 N 11 6.60 1.10 114.20 120.80 A A A CA CB SG CYS CYS CYS 179 179 179 N 12 5.28 0.50 120.30 125.58 A A A NE CZ NH1 ARG ARG ARG 151 151 151 N 13 7.38 1.10 114.20 121.58 A A A CA CB SG CYS CYS CYS 179 179 179 N 14 6.88 1.10 114.20 121.08 A A A CA CB SG CYS CYS CYS 179 179 179 N 15 7.12 1.10 114.20 121.32 A A A CA CB SG CYS CYS CYS 179 179 179 N 16 6.67 1.10 114.20 120.87 A A A CA CB SG CYS CYS CYS 179 179 179 N 17 7.65 1.10 114.20 121.85 A A A CA CB SG CYS CYS CYS 179 179 179 N 19 7.69 1.10 114.20 121.89 A A A CA CB SG CYS CYS CYS 179 179 179 N 20 3.45 0.50 120.30 123.75 A A A NE CZ NH1 ARG ARG ARG 148 148 148 N 20 6.69 1.10 114.20 120.89 A A A CA CB SG CYS CYS CYS 179 179 179 N 1 A THR 107 50.87 -151.75 1 A ALA 115 65.89 -173.82 1 A ALA 116 57.88 -160.62 1 A ALA 120 -82.70 36.81 1 A VAL 121 -92.09 56.29 1 A ARG 136 -25.74 117.97 1 A TYR 169 54.01 -159.14 2 A ALA 117 -151.19 82.28 2 A LEU 125 48.31 22.14 2 A ARG 136 -30.71 117.29 2 A SER 230 -41.97 -72.72 3 A THR 95 66.72 158.77 3 A LYS 106 -149.50 -59.62 3 A ALA 115 62.10 -158.88 3 A SER 135 -55.18 101.03 3 A ARG 136 -28.80 118.00 3 A TYR 169 55.49 -141.09 3 A ASN 171 77.48 167.10 4 A GLN 91 58.02 172.81 4 A THR 95 68.95 -47.22 4 A LYS 104 56.25 75.61 4 A ASN 108 70.89 160.09 4 A MET 109 -152.74 37.22 4 A LYS 110 50.76 -147.35 4 A ALA 116 -147.78 -47.71 4 A ALA 118 59.36 117.74 4 A ARG 136 -27.20 107.27 4 A HIS 140 -119.86 79.25 4 A TYR 169 55.38 -146.04 4 A ASN 171 70.37 158.67 4 A GLU 221 -105.74 -61.23 5 A HIS 96 66.96 -1.55 5 A SER 97 -148.51 31.13 5 A HIS 111 62.23 -175.74 5 A ALA 115 61.43 -164.84 5 A ALA 116 -140.93 -9.14 5 A ARG 136 -29.92 117.82 5 A MET 166 -67.37 0.50 5 A TYR 169 72.28 141.31 5 A GLU 221 -107.15 -65.42 5 A SER 222 48.32 6.09 5 A SER 231 48.58 -152.40 5 A HIS 233 -64.15 12.49 5 A HIS 234 53.41 -155.89 6 A TRP 99 54.86 -155.57 6 A SER 103 61.49 -179.37 6 A MET 109 -174.13 148.59 6 A ALA 116 -79.34 28.01 6 A SER 135 -59.89 101.51 6 A ARG 136 -29.82 116.57 6 A VAL 176 -67.64 -70.02 6 A SER 222 -64.93 2.52 6 A HIS 234 67.45 167.67 6 A HIS 236 56.10 83.60 7 A LYS 106 -145.85 -48.11 7 A THR 107 64.76 -71.22 7 A ALA 113 -141.07 -46.48 7 A ARG 136 -25.02 117.44 7 A TYR 169 66.90 111.86 7 A VAL 176 -66.03 -72.62 7 A SER 222 -73.94 26.25 7 A SER 230 60.91 -40.27 7 A HIS 232 58.66 92.20 7 A HIS 233 56.71 77.42 7 A HIS 235 64.35 176.18 8 A THR 95 -77.94 32.04 8 A GLN 98 54.01 84.72 8 A LYS 106 46.57 26.73 8 A LYS 110 -164.51 -39.09 8 A ALA 120 -79.05 47.72 8 A ARG 136 -29.31 117.91 8 A TYR 169 58.20 -135.57 8 A ASN 171 74.96 155.89 8 A SER 231 -159.82 -62.92 8 A HIS 232 -156.68 -66.87 9 A HIS 96 67.54 166.65 9 A SER 103 55.74 -177.46 9 A HIS 111 66.48 -27.17 9 A ALA 113 -77.20 43.73 9 A ALA 115 57.08 81.50 9 A ALA 120 -147.79 32.59 9 A ARG 136 -25.19 116.46 9 A SER 222 -69.70 4.29 9 A SER 230 57.86 -172.09 10 A HIS 96 66.17 -175.45 10 A SER 97 -158.77 -48.11 10 A ARG 136 -29.56 117.61 10 A TYR 169 57.21 -158.98 10 A VAL 176 -67.00 -71.45 10 A SER 230 57.05 -10.74 10 A HIS 234 65.24 147.70 11 A ALA 113 64.56 -61.16 11 A ARG 136 -25.92 117.89 11 A TYR 169 61.24 148.63 11 A VAL 176 -64.21 -71.06 11 A SER 222 -70.27 22.27 11 A SER 231 61.76 -174.58 11 A HIS 232 -68.82 98.98 11 A HIS 235 -141.59 41.92 12 A GLN 98 68.28 133.87 12 A ASN 100 59.98 179.26 12 A THR 107 73.02 128.48 12 A ASN 108 -145.58 -39.74 12 A ALA 118 63.50 -163.74 12 A ARG 136 -33.05 114.26 12 A HIS 140 -118.32 77.13 12 A VAL 176 -64.67 -70.87 12 A SER 231 66.03 -176.49 12 A HIS 235 64.25 -50.52 12 A HIS 236 69.47 -54.04 13 A THR 95 52.95 77.60 13 A TRP 99 56.33 19.03 13 A LYS 106 60.59 -103.52 13 A ALA 120 62.84 -67.22 13 A ARG 136 -30.96 116.39 13 A SER 170 -49.27 107.71 13 A GLU 221 -132.79 -63.09 13 A SER 222 52.81 10.38 13 A HIS 232 -144.66 -41.23 13 A HIS 236 65.32 -12.56 14 A SER 97 57.85 -178.02 14 A ASN 100 62.88 -156.97 14 A HIS 111 71.55 178.16 14 A MET 112 66.26 177.17 14 A ALA 120 -74.14 29.09 14 A SER 135 -59.18 101.13 14 A ARG 136 -25.79 116.36 14 A TYR 169 71.78 135.44 14 A SER 231 56.01 -162.59 14 A HIS 233 64.41 -7.62 15 A HIS 96 55.02 86.94 15 A GLN 98 66.30 -61.16 15 A ALA 120 -77.19 48.06 15 A ARG 136 -22.85 117.73 15 A VAL 176 -63.42 -70.43 15 A HIS 235 -134.46 -51.26 16 A ASN 100 59.64 174.67 16 A MET 109 -141.37 -100.83 16 A SER 135 -56.09 101.08 16 A ARG 136 -29.73 118.05 16 A TYR 169 62.95 115.57 16 A VAL 176 -65.27 -71.98 16 A SER 222 -66.13 6.58 16 A SER 231 -162.90 -165.90 16 A HIS 232 -77.84 -136.32 16 A HIS 235 22.59 77.54 17 A HIS 96 69.82 161.57 17 A LYS 104 76.98 135.18 17 A MET 109 -162.13 -47.21 17 A ALA 120 -79.91 23.27 17 A ARG 136 -26.09 114.50 17 A HIS 234 -152.07 -52.29 18 A THR 95 -76.36 23.81 18 A LYS 106 -153.36 52.14 18 A LYS 110 58.14 -171.25 18 A ARG 136 -31.67 117.94 18 A TYR 169 76.58 105.36 19 A HIS 111 -86.41 -99.35 19 A ARG 136 -28.12 116.74 19 A VAL 176 -65.00 -73.50 19 A HIS 232 68.50 -176.65 19 A HIS 233 54.27 18.59 19 A HIS 235 -151.60 55.34 19 A HIS 236 35.52 72.66 20 A HIS 111 -135.39 -67.20 20 A MET 112 67.48 158.13 20 A ALA 118 -141.87 22.87 20 A ALA 120 -85.11 45.34 20 A ARG 136 -29.80 115.37 20 A MET 166 -76.85 20.63 20 A VAL 176 -62.86 -70.91 20 A SER 230 -80.28 39.03 20 A SER 231 52.44 -152.14 Three dimensional structure of HuPrP(90-231 M129 Q212P) 1 N N A SER 143 A SER 54 HELX_P A ASN 153 A ASN 64 1 1 11 A MET 154 A MET 65 HELX_P A TYR 157 A TYR 68 5 2 4 A ASN 173 A ASN 84 HELX_P A THR 190 A THR 101 1 3 18 A THR 191 A THR 102 HELX_P A GLY 195 A GLY 106 5 4 5 A THR 199 A THR 110 HELX_P A GLU 221 A GLU 132 1 5 23 A GLU 221 A GLU 132 HELX_P A SER 231 A SER 142 1 6 11 disulf 2.038 A CYS 179 A SG CYS 90 1_555 A CYS 214 A SG CYS 125 1_555 MEMBRANE PROTEIN human prion mutant, Amyloid, Cell membrane, Disease mutation, Disulfide bond, Glycoprotein, Golgi apparatus, GPI-anchor, Lipoprotein, Membrane, Prion, MEMBRANE PROTEIN PRIO_HUMAN UNP 1 90 P04156 GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEY SNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSS 90 231 2KUN 90 231 P04156 A 1 1 142 1 GLN engineered mutation PRO 212 2KUN A P04156 UNP 212 123 1 expression tag HIS 232 2KUN A P04156 UNP 143 1 expression tag HIS 233 2KUN A P04156 UNP 144 1 expression tag HIS 234 2KUN A P04156 UNP 145 1 expression tag HIS 235 2KUN A P04156 UNP 146 1 expression tag HIS 236 2KUN A P04156 UNP 147 1 expression tag HIS 237 2KUN A P04156 UNP 148 2 anti-parallel A MET 129 A MET 40 A LEU 130 A LEU 41 A TYR 162 A TYR 73 A TYR 163 A TYR 74 1 P 1