1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Burschowsky, D. Rudolf, F. Rabut, G. Herrmann, T. Peter, M. Wider, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 286 1364 1373 10.1074/jbc.M110.135038 20929865 Structural analysis of the conserved ubiquitin-binding motifs (UBMs) of the translesion polymerase iota in complex with ubiquitin. 2011 5704.247 DNA polymerase iota C-terminal ubiquitin-binding motif (UNP residues 673-717) 1 man polymer 8576.831 Ubiquitin 1 man polymer Rad30 homolog B no no GSPEFDSAEEKLPFPPDIDPQVFYELPEEVQKELMAEWERAGAARPSAHR GSPEFDSAEEKLPFPPDIDPQVFYELPEEVQKELMAEWERAGAARPSAHR A polypeptide(L) no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample Poli, Rad30b 10090 Mus musculus 562 Escherichia coli BL21 Star DE3 pGEX-4T-1 human sample RPS27A, UBA80, UBCEP1, UBA52, UBCEP2, UBB, UBC 9606 Homo sapiens 562 Escherichia coli BL21 Star DE3 pET-19b repository Initial release Version format compliance 1 0 2010-10-06 1 1 2011-07-13 HELIX: DETERMINATION METHOD: AUTHOR SHEET DETERMINATION METHOD: AUTHOR BMRB Y RCSB 2010-04-19 REL REL 2758 672 548 778 760 structures with the lowest energy 200 20 3D HNCACB 3D 1H-15N NOESY 3D 1H-15N TOCSY 3D 1H-13C NOESY 3D HCCH-COSY 2D 1H-15N HSQC 2D 1H-13C HSQC 3D HNCACB 3D 1H-15N NOESY 3D 1H-15N TOCSY 3D 1H-13C NOESY 3D HCCH-COSY 2D 1H-15N HSQC 2D 1H-13C HSQC 3D 1H-13C-filtered-13C-edited NOESY 3D 1H-13C-filtered-13C-edited NOESY 3D 1H-13C-filtered-13C-edited NOESY 3D 1H-13C-AROMATIC NOESY 1-2 mM [U-99% 15N] 4-8 mM 25 mM 25 mM 100 mM 2 mM 0.15 mM 0.2 % 1-2 mM [U-95% 13C; U-99% 15N] 4-8 mM 25 mM 25 mM 100 mM 2 mM 0.15 mM 0.2 % 4-8 mM 1-2 mM [U-99% 15N] 25 mM 25 mM 100 mM 2 mM 0.15 mM 0.2 % 4-8 mM 1-2 mM [U-95% 13C; U-99% 15N] 25 mM 25 mM 100 mM 2 mM 0.15 mM 0.2 % 1-2 mM 4-8 mM [U-95% 13C; U-99% 15N] 25 mM 25 mM 100 mM 2 mM 0.15 mM 0.2 % 0.189 6.0 ambient 288 K molecular dynamics 1 lowest energy 1-2 mM [U-99% 15N] DNA polymerase iota UBM2, 4-8 mM Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O 95% H2O/5% D2O 1-2 mM [U-95% 13C; U-99% 15N] DNA polymerase iota UBM2, 4-8 mM Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O 95% H2O/5% D2O 4-8 mM DNA polymerase iota UBM2, 1-2 mM [U-99% 15N] Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O 95% H2O/5% D2O 4-8 mM DNA polymerase iota UBM2, 1-2 mM [U-95% 13C; U-99% 15N] Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O 95% H2O/5% D2O 1.7 mM DNA polymerase iota UBM2, 6.8 mM [U-95% 13C; U-99% 15N] Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O 95% H2O/5% D2O Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm refinement AMBER 9 Bruker Biospin collection TOPSPIN 2.1 Bruker Biospin processing TOPSPIN 2.1 Koradi, Billeter and Wuthrich geometry optimization Molmol 2k.2 T. Herrmann peak picking UNIO'08 1.0.4 T. Herrmann chemical shift assignment UNIO'08 1.0.4 T. Herrmann structure solution UNIO'08 1.0.4 Guntert, Braun and Wuthrich structure solution DYANA R. Keller data analysis CARA 1.8.4 R. Keller chemical shift assignment CARA 1.8.4 600 Bruker Avance Bruker Avance 750 Bruker Avance Bruker Avance 900 Bruker Avance Bruker Avance n 1 668 A n 2 669 A n 3 670 A n 4 671 A n 5 672 A n 6 673 A n 7 674 A ALA 675 n 8 ALA 675 A GLU 676 n 9 GLU 676 A GLU 677 n 10 GLU 677 A LYS 678 n 11 LYS 678 A LEU 679 n 12 LEU 679 A PRO 680 n 13 PRO 680 A PHE 681 n 14 PHE 681 A PRO 682 n 15 PRO 682 A PRO 683 n 16 PRO 683 A ASP 684 n 17 ASP 684 A ILE 685 n 18 ILE 685 A ASP 686 n 19 ASP 686 A PRO 687 n 20 PRO 687 A GLN 688 n 21 GLN 688 A VAL 689 n 22 VAL 689 A PHE 690 n 23 PHE 690 A TYR 691 n 24 TYR 691 A GLU 692 n 25 GLU 692 A LEU 693 n 26 LEU 693 A PRO 694 n 27 PRO 694 A GLU 695 n 28 GLU 695 A GLU 696 n 29 GLU 696 A VAL 697 n 30 VAL 697 A GLN 698 n 31 GLN 698 A LYS 699 n 32 LYS 699 A GLU 700 n 33 GLU 700 A LEU 701 n 34 LEU 701 A MET 702 n 35 MET 702 A ALA 703 n 36 ALA 703 A GLU 704 n 37 GLU 704 A TRP 705 n 38 TRP 705 A GLU 706 n 39 GLU 706 A ARG 707 n 40 ARG 707 A ALA 708 n 41 ALA 708 A GLY 709 n 42 GLY 709 A ALA 710 n 43 ALA 710 A n 44 711 A n 45 712 A n 46 713 A n 47 714 A n 48 715 A n 49 716 A n 50 717 A MET 1 n 1 MET 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B PHE 4 n 4 PHE 4 B VAL 5 n 5 VAL 5 B LYS 6 n 6 LYS 6 B THR 7 n 7 THR 7 B LEU 8 n 8 LEU 8 B THR 9 n 9 THR 9 B GLY 10 n 10 GLY 10 B LYS 11 n 11 LYS 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B THR 14 n 14 THR 14 B LEU 15 n 15 LEU 15 B GLU 16 n 16 GLU 16 B VAL 17 n 17 VAL 17 B GLU 18 n 18 GLU 18 B PRO 19 n 19 PRO 19 B SER 20 n 20 SER 20 B ASP 21 n 21 ASP 21 B THR 22 n 22 THR 22 B ILE 23 n 23 ILE 23 B GLU 24 n 24 GLU 24 B ASN 25 n 25 ASN 25 B VAL 26 n 26 VAL 26 B LYS 27 n 27 LYS 27 B ALA 28 n 28 ALA 28 B LYS 29 n 29 LYS 29 B ILE 30 n 30 ILE 30 B GLN 31 n 31 GLN 31 B ASP 32 n 32 ASP 32 B LYS 33 n 33 LYS 33 B GLU 34 n 34 GLU 34 B GLY 35 n 35 GLY 35 B ILE 36 n 36 ILE 36 B PRO 37 n 37 PRO 37 B PRO 38 n 38 PRO 38 B ASP 39 n 39 ASP 39 B GLN 40 n 40 GLN 40 B GLN 41 n 41 GLN 41 B ARG 42 n 42 ARG 42 B LEU 43 n 43 LEU 43 B ILE 44 n 44 ILE 44 B PHE 45 n 45 PHE 45 B ALA 46 n 46 ALA 46 B GLY 47 n 47 GLY 47 B LYS 48 n 48 LYS 48 B GLN 49 n 49 GLN 49 B LEU 50 n 50 LEU 50 B GLU 51 n 51 GLU 51 B ASP 52 n 52 ASP 52 B GLY 53 n 53 GLY 53 B ARG 54 n 54 ARG 54 B THR 55 n 55 THR 55 B LEU 56 n 56 LEU 56 B SER 57 n 57 SER 57 B ASP 58 n 58 ASP 58 B TYR 59 n 59 TYR 59 B ASN 60 n 60 ASN 60 B ILE 61 n 61 ILE 61 B GLN 62 n 62 GLN 62 B LYS 63 n 63 LYS 63 B GLU 64 n 64 GLU 64 B SER 65 n 65 SER 65 B THR 66 n 66 THR 66 B LEU 67 n 67 LEU 67 B HIS 68 n 68 HIS 68 B LEU 69 n 69 LEU 69 B VAL 70 n 70 VAL 70 B LEU 71 n 71 LEU 71 B ARG 72 n 72 ARG 72 B LEU 73 n 73 LEU 73 B ARG 74 n 74 ARG 74 B GLY 75 n 75 GLY 75 B GLY 76 n 76 GLY 76 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 B N LEU 15 B N LEU 15 B O ILE 3 B O ILE 3 B O PHE 4 B O PHE 4 B N LEU 67 B N LEU 67 B N VAL 70 B N VAL 70 B O ARG 42 B O ARG 42 B N PHE 45 B N PHE 45 B O LYS 48 B O LYS 48 1 A GLY 668 A GLY 1 1 Y 1 A SER 669 A SER 2 1 Y 1 A PRO 670 A PRO 3 1 Y 1 A GLU 671 A GLU 4 1 Y 1 A PHE 672 A PHE 5 1 Y 1 A ASP 673 A ASP 6 1 Y 1 A SER 674 A SER 7 1 Y 1 A ALA 711 A ALA 44 1 Y 1 A ARG 712 A ARG 45 1 Y 1 A PRO 713 A PRO 46 1 Y 1 A SER 714 A SER 47 1 Y 1 A ALA 715 A ALA 48 1 Y 1 A HIS 716 A HIS 49 1 Y 1 A ARG 717 A ARG 50 1 Y 2 A GLY 668 A GLY 1 1 Y 2 A SER 669 A SER 2 1 Y 2 A PRO 670 A PRO 3 1 Y 2 A GLU 671 A GLU 4 1 Y 2 A PHE 672 A PHE 5 1 Y 2 A ASP 673 A ASP 6 1 Y 2 A SER 674 A SER 7 1 Y 2 A ALA 711 A ALA 44 1 Y 2 A ARG 712 A ARG 45 1 Y 2 A PRO 713 A PRO 46 1 Y 2 A SER 714 A SER 47 1 Y 2 A ALA 715 A ALA 48 1 Y 2 A HIS 716 A HIS 49 1 Y 2 A ARG 717 A ARG 50 1 Y 3 A GLY 668 A GLY 1 1 Y 3 A SER 669 A SER 2 1 Y 3 A PRO 670 A PRO 3 1 Y 3 A GLU 671 A GLU 4 1 Y 3 A PHE 672 A PHE 5 1 Y 3 A ASP 673 A ASP 6 1 Y 3 A SER 674 A SER 7 1 Y 3 A ALA 711 A ALA 44 1 Y 3 A ARG 712 A ARG 45 1 Y 3 A PRO 713 A PRO 46 1 Y 3 A SER 714 A SER 47 1 Y 3 A ALA 715 A ALA 48 1 Y 3 A HIS 716 A HIS 49 1 Y 3 A ARG 717 A ARG 50 1 Y 4 A GLY 668 A GLY 1 1 Y 4 A SER 669 A SER 2 1 Y 4 A PRO 670 A PRO 3 1 Y 4 A GLU 671 A GLU 4 1 Y 4 A PHE 672 A PHE 5 1 Y 4 A ASP 673 A ASP 6 1 Y 4 A SER 674 A SER 7 1 Y 4 A ALA 711 A ALA 44 1 Y 4 A ARG 712 A ARG 45 1 Y 4 A PRO 713 A PRO 46 1 Y 4 A SER 714 A SER 47 1 Y 4 A ALA 715 A ALA 48 1 Y 4 A HIS 716 A HIS 49 1 Y 4 A ARG 717 A ARG 50 1 Y 5 A GLY 668 A GLY 1 1 Y 5 A SER 669 A SER 2 1 Y 5 A PRO 670 A PRO 3 1 Y 5 A GLU 671 A GLU 4 1 Y 5 A PHE 672 A PHE 5 1 Y 5 A ASP 673 A ASP 6 1 Y 5 A SER 674 A SER 7 1 Y 5 A ALA 711 A ALA 44 1 Y 5 A ARG 712 A ARG 45 1 Y 5 A PRO 713 A PRO 46 1 Y 5 A SER 714 A SER 47 1 Y 5 A ALA 715 A ALA 48 1 Y 5 A HIS 716 A HIS 49 1 Y 5 A ARG 717 A ARG 50 1 Y 6 A GLY 668 A GLY 1 1 Y 6 A SER 669 A SER 2 1 Y 6 A PRO 670 A PRO 3 1 Y 6 A GLU 671 A GLU 4 1 Y 6 A PHE 672 A PHE 5 1 Y 6 A ASP 673 A ASP 6 1 Y 6 A SER 674 A SER 7 1 Y 6 A ALA 711 A ALA 44 1 Y 6 A ARG 712 A ARG 45 1 Y 6 A PRO 713 A PRO 46 1 Y 6 A SER 714 A SER 47 1 Y 6 A ALA 715 A ALA 48 1 Y 6 A HIS 716 A HIS 49 1 Y 6 A ARG 717 A ARG 50 1 Y 7 A GLY 668 A GLY 1 1 Y 7 A SER 669 A SER 2 1 Y 7 A PRO 670 A PRO 3 1 Y 7 A GLU 671 A GLU 4 1 Y 7 A PHE 672 A PHE 5 1 Y 7 A ASP 673 A ASP 6 1 Y 7 A SER 674 A SER 7 1 Y 7 A ALA 711 A ALA 44 1 Y 7 A ARG 712 A ARG 45 1 Y 7 A PRO 713 A PRO 46 1 Y 7 A SER 714 A SER 47 1 Y 7 A ALA 715 A ALA 48 1 Y 7 A HIS 716 A HIS 49 1 Y 7 A ARG 717 A ARG 50 1 Y 8 A GLY 668 A GLY 1 1 Y 8 A SER 669 A SER 2 1 Y 8 A PRO 670 A PRO 3 1 Y 8 A GLU 671 A GLU 4 1 Y 8 A PHE 672 A PHE 5 1 Y 8 A ASP 673 A ASP 6 1 Y 8 A SER 674 A SER 7 1 Y 8 A ALA 711 A ALA 44 1 Y 8 A ARG 712 A ARG 45 1 Y 8 A PRO 713 A PRO 46 1 Y 8 A SER 714 A SER 47 1 Y 8 A ALA 715 A ALA 48 1 Y 8 A HIS 716 A HIS 49 1 Y 8 A ARG 717 A ARG 50 1 Y 9 A GLY 668 A GLY 1 1 Y 9 A SER 669 A SER 2 1 Y 9 A PRO 670 A PRO 3 1 Y 9 A GLU 671 A GLU 4 1 Y 9 A PHE 672 A PHE 5 1 Y 9 A ASP 673 A ASP 6 1 Y 9 A SER 674 A SER 7 1 Y 9 A ALA 711 A ALA 44 1 Y 9 A ARG 712 A ARG 45 1 Y 9 A PRO 713 A PRO 46 1 Y 9 A SER 714 A SER 47 1 Y 9 A ALA 715 A ALA 48 1 Y 9 A HIS 716 A HIS 49 1 Y 9 A ARG 717 A ARG 50 1 Y 10 A GLY 668 A GLY 1 1 Y 10 A SER 669 A SER 2 1 Y 10 A PRO 670 A PRO 3 1 Y 10 A GLU 671 A GLU 4 1 Y 10 A PHE 672 A PHE 5 1 Y 10 A ASP 673 A ASP 6 1 Y 10 A SER 674 A SER 7 1 Y 10 A ALA 711 A ALA 44 1 Y 10 A ARG 712 A ARG 45 1 Y 10 A PRO 713 A PRO 46 1 Y 10 A SER 714 A SER 47 1 Y 10 A ALA 715 A ALA 48 1 Y 10 A HIS 716 A HIS 49 1 Y 10 A ARG 717 A ARG 50 1 Y 11 A GLY 668 A GLY 1 1 Y 11 A SER 669 A SER 2 1 Y 11 A PRO 670 A PRO 3 1 Y 11 A GLU 671 A GLU 4 1 Y 11 A PHE 672 A PHE 5 1 Y 11 A ASP 673 A ASP 6 1 Y 11 A SER 674 A SER 7 1 Y 11 A ALA 711 A ALA 44 1 Y 11 A ARG 712 A ARG 45 1 Y 11 A PRO 713 A PRO 46 1 Y 11 A SER 714 A SER 47 1 Y 11 A ALA 715 A ALA 48 1 Y 11 A HIS 716 A HIS 49 1 Y 11 A ARG 717 A ARG 50 1 Y 12 A GLY 668 A GLY 1 1 Y 12 A SER 669 A SER 2 1 Y 12 A PRO 670 A PRO 3 1 Y 12 A GLU 671 A GLU 4 1 Y 12 A PHE 672 A PHE 5 1 Y 12 A ASP 673 A ASP 6 1 Y 12 A SER 674 A SER 7 1 Y 12 A ALA 711 A ALA 44 1 Y 12 A ARG 712 A ARG 45 1 Y 12 A PRO 713 A PRO 46 1 Y 12 A SER 714 A SER 47 1 Y 12 A ALA 715 A ALA 48 1 Y 12 A HIS 716 A HIS 49 1 Y 12 A ARG 717 A ARG 50 1 Y 13 A GLY 668 A GLY 1 1 Y 13 A SER 669 A SER 2 1 Y 13 A PRO 670 A PRO 3 1 Y 13 A GLU 671 A GLU 4 1 Y 13 A PHE 672 A PHE 5 1 Y 13 A ASP 673 A ASP 6 1 Y 13 A SER 674 A SER 7 1 Y 13 A ALA 711 A ALA 44 1 Y 13 A ARG 712 A ARG 45 1 Y 13 A PRO 713 A PRO 46 1 Y 13 A SER 714 A SER 47 1 Y 13 A ALA 715 A ALA 48 1 Y 13 A HIS 716 A HIS 49 1 Y 13 A ARG 717 A ARG 50 1 Y 14 A GLY 668 A GLY 1 1 Y 14 A SER 669 A SER 2 1 Y 14 A PRO 670 A PRO 3 1 Y 14 A GLU 671 A GLU 4 1 Y 14 A PHE 672 A PHE 5 1 Y 14 A ASP 673 A ASP 6 1 Y 14 A SER 674 A SER 7 1 Y 14 A ALA 711 A ALA 44 1 Y 14 A ARG 712 A ARG 45 1 Y 14 A PRO 713 A PRO 46 1 Y 14 A SER 714 A SER 47 1 Y 14 A ALA 715 A ALA 48 1 Y 14 A HIS 716 A HIS 49 1 Y 14 A ARG 717 A ARG 50 1 Y 15 A GLY 668 A GLY 1 1 Y 15 A SER 669 A SER 2 1 Y 15 A PRO 670 A PRO 3 1 Y 15 A GLU 671 A GLU 4 1 Y 15 A PHE 672 A PHE 5 1 Y 15 A ASP 673 A ASP 6 1 Y 15 A SER 674 A SER 7 1 Y 15 A ALA 711 A ALA 44 1 Y 15 A ARG 712 A ARG 45 1 Y 15 A PRO 713 A PRO 46 1 Y 15 A SER 714 A SER 47 1 Y 15 A ALA 715 A ALA 48 1 Y 15 A HIS 716 A HIS 49 1 Y 15 A ARG 717 A ARG 50 1 Y 16 A GLY 668 A GLY 1 1 Y 16 A SER 669 A SER 2 1 Y 16 A PRO 670 A PRO 3 1 Y 16 A GLU 671 A GLU 4 1 Y 16 A PHE 672 A PHE 5 1 Y 16 A ASP 673 A ASP 6 1 Y 16 A SER 674 A SER 7 1 Y 16 A ALA 711 A ALA 44 1 Y 16 A ARG 712 A ARG 45 1 Y 16 A PRO 713 A PRO 46 1 Y 16 A SER 714 A SER 47 1 Y 16 A ALA 715 A ALA 48 1 Y 16 A HIS 716 A HIS 49 1 Y 16 A ARG 717 A ARG 50 1 Y 17 A GLY 668 A GLY 1 1 Y 17 A SER 669 A SER 2 1 Y 17 A PRO 670 A PRO 3 1 Y 17 A GLU 671 A GLU 4 1 Y 17 A PHE 672 A PHE 5 1 Y 17 A ASP 673 A ASP 6 1 Y 17 A SER 674 A SER 7 1 Y 17 A ALA 711 A ALA 44 1 Y 17 A ARG 712 A ARG 45 1 Y 17 A PRO 713 A PRO 46 1 Y 17 A SER 714 A SER 47 1 Y 17 A ALA 715 A ALA 48 1 Y 17 A HIS 716 A HIS 49 1 Y 17 A ARG 717 A ARG 50 1 Y 18 A GLY 668 A GLY 1 1 Y 18 A SER 669 A SER 2 1 Y 18 A PRO 670 A PRO 3 1 Y 18 A GLU 671 A GLU 4 1 Y 18 A PHE 672 A PHE 5 1 Y 18 A ASP 673 A ASP 6 1 Y 18 A SER 674 A SER 7 1 Y 18 A ALA 711 A ALA 44 1 Y 18 A ARG 712 A ARG 45 1 Y 18 A PRO 713 A PRO 46 1 Y 18 A SER 714 A SER 47 1 Y 18 A ALA 715 A ALA 48 1 Y 18 A HIS 716 A HIS 49 1 Y 18 A ARG 717 A ARG 50 1 Y 19 A GLY 668 A GLY 1 1 Y 19 A SER 669 A SER 2 1 Y 19 A PRO 670 A PRO 3 1 Y 19 A GLU 671 A GLU 4 1 Y 19 A PHE 672 A PHE 5 1 Y 19 A ASP 673 A ASP 6 1 Y 19 A SER 674 A SER 7 1 Y 19 A ALA 711 A ALA 44 1 Y 19 A ARG 712 A ARG 45 1 Y 19 A PRO 713 A PRO 46 1 Y 19 A SER 714 A SER 47 1 Y 19 A ALA 715 A ALA 48 1 Y 19 A HIS 716 A HIS 49 1 Y 19 A ARG 717 A ARG 50 1 Y 20 A GLY 668 A GLY 1 1 Y 20 A SER 669 A SER 2 1 Y 20 A PRO 670 A PRO 3 1 Y 20 A GLU 671 A GLU 4 1 Y 20 A PHE 672 A PHE 5 1 Y 20 A ASP 673 A ASP 6 1 Y 20 A SER 674 A SER 7 1 Y 20 A ALA 711 A ALA 44 1 Y 20 A ARG 712 A ARG 45 1 Y 20 A PRO 713 A PRO 46 1 Y 20 A SER 714 A SER 47 1 Y 20 A ALA 715 A ALA 48 1 Y 20 A HIS 716 A HIS 49 1 Y 20 A ARG 717 A ARG 50 1 Y 1 A GLU 676 -77.42 33.53 1 A LEU 679 -58.47 170.07 1 A PRO 680 -60.89 10.60 1 A ASP 684 60.54 -25.00 1 A PRO 687 -76.16 32.97 1 A GLU 692 -80.17 37.64 1 A GLU 696 -46.91 -15.45 1 B GLN 2 -179.39 116.53 1 B LEU 8 -64.00 13.14 1 B PRO 19 -69.68 6.12 1 B ARG 42 -144.13 55.63 1 B ALA 46 54.33 18.59 1 B LYS 48 -79.50 21.64 1 B GLN 49 10.81 92.57 1 B GLU 51 -100.15 -148.10 1 B ASP 52 -149.24 22.46 1 B ARG 54 -117.32 -164.74 1 B GLU 64 -141.05 25.86 1 B THR 66 62.17 141.21 1 B ARG 74 64.28 -65.85 2 A GLU 677 -66.19 17.03 2 A PRO 680 -65.35 12.56 2 A ASP 684 60.80 -21.50 2 A GLU 692 -72.40 41.62 2 B GLN 2 -170.04 -173.07 2 B ASP 21 -70.48 -143.04 2 B ALA 46 179.43 26.23 2 B LYS 48 -63.94 94.98 2 B LEU 50 -49.85 152.98 2 B ARG 54 -120.81 -167.68 2 B ILE 61 -38.13 122.74 2 B GLU 64 -148.92 24.33 2 B THR 66 64.56 140.82 2 B VAL 70 -66.87 83.04 2 B LEU 73 47.90 -63.99 2 B ARG 74 60.80 -57.92 3 A GLU 676 -76.92 42.65 3 A PRO 680 -63.25 15.00 3 A ASP 684 59.63 -18.47 3 A GLU 692 -72.74 24.24 3 A GLU 695 -16.96 -55.38 3 A GLU 696 -48.21 -17.91 3 B LEU 8 -67.40 17.48 3 B ALA 46 -178.47 25.41 3 B LYS 48 -69.68 76.12 3 B ARG 54 -119.08 -169.06 3 B LYS 63 -63.59 -90.28 3 B GLU 64 -67.37 21.98 3 B THR 66 64.15 146.58 3 B VAL 70 -152.24 73.74 3 B LEU 73 47.81 -75.93 3 B ARG 74 64.39 -55.39 4 A GLU 676 -80.66 39.13 4 A PRO 680 -59.82 9.59 4 A ASP 684 59.35 -22.76 4 A GLU 692 -78.72 39.61 4 B GLN 2 -176.20 113.31 4 B LEU 8 -69.99 20.66 4 B ASP 21 -67.84 -145.67 4 B ALA 46 55.88 16.22 4 B LYS 48 -85.98 35.30 4 B GLN 49 -8.45 105.19 4 B GLU 51 -80.61 -155.74 4 B ASP 52 -143.93 17.99 4 B ARG 54 -104.24 -157.28 4 B GLU 64 -141.03 25.53 4 B THR 66 61.68 139.74 4 B ARG 74 64.95 -61.96 5 A GLU 676 -78.24 48.30 5 A PRO 680 -58.36 11.61 5 A ASP 684 58.07 -19.31 5 A GLU 696 -45.49 -16.69 5 B GLN 2 -171.47 112.18 5 B LEU 8 -66.56 16.37 5 B GLN 49 8.12 97.65 5 B GLU 51 -83.29 -155.83 5 B ARG 54 -101.34 -165.90 5 B GLU 64 -143.82 23.20 5 B THR 66 63.22 150.18 5 B LEU 73 56.13 -63.44 5 B ARG 74 60.98 -49.29 6 A GLU 676 -77.21 45.73 6 A PRO 680 -67.02 11.00 6 A ASP 684 61.78 -25.67 6 A PRO 687 -75.60 33.25 6 A GLU 692 -79.04 35.73 6 A GLU 696 -46.76 -15.04 6 B GLN 2 -170.50 -170.53 6 B LEU 8 -66.34 15.99 6 B PRO 19 -69.47 6.05 6 B GLU 51 -112.16 -151.09 6 B ASP 52 -144.54 14.93 6 B ARG 54 -115.97 -165.34 6 B GLU 64 -152.22 21.62 6 B THR 66 64.39 146.55 6 B VAL 70 -151.36 76.29 6 B LEU 73 57.91 -24.55 6 B ARG 74 54.63 -65.03 7 A PRO 680 -66.14 14.32 7 A ASP 684 60.45 -22.44 7 A GLN 688 -68.82 7.87 7 A GLU 692 -72.64 27.01 7 A GLU 696 -46.20 -19.49 7 B LEU 8 -67.94 18.26 7 B PRO 19 -69.09 5.48 7 B ALA 46 55.74 16.41 7 B LYS 48 -86.25 35.89 7 B GLN 49 -10.46 106.65 7 B GLU 51 -79.64 -155.86 7 B ASP 52 -141.58 15.19 7 B ARG 54 -79.54 -160.75 7 B GLN 62 -107.34 -168.04 7 B LYS 63 -60.91 -93.62 7 B GLU 64 -66.02 21.48 7 B THR 66 64.30 147.85 7 B LEU 73 53.18 -64.54 7 B ARG 74 59.48 -57.37 8 A GLU 676 -76.57 45.07 8 A PRO 680 -65.39 13.26 8 A ASP 684 60.37 -22.95 8 A GLU 692 -74.83 34.23 8 A GLU 695 -28.83 -41.29 8 A GLU 696 -48.30 -18.61 8 B LEU 8 -71.23 24.89 8 B ALA 46 -176.46 24.14 8 B LYS 48 -81.35 41.38 8 B GLN 49 -25.08 112.06 8 B GLU 51 -83.66 -154.08 8 B ASP 52 -140.30 14.48 8 B ARG 54 -112.78 -164.04 8 B GLU 64 -150.93 24.54 8 B THR 66 65.88 136.54 8 B LEU 73 45.43 -72.13 8 B ARG 74 59.83 -56.41 9 A GLU 676 -76.95 34.22 9 A PRO 680 -59.56 12.90 9 A ASP 684 59.73 -23.24 9 A GLU 692 -73.84 41.24 9 A GLU 696 -46.23 -15.26 9 B GLN 2 -173.62 113.89 9 B LEU 8 -67.30 15.27 9 B ASP 21 -72.84 -138.14 9 B ALA 46 -175.63 23.65 9 B LYS 48 -84.09 39.69 9 B GLN 49 -22.69 111.65 9 B GLU 51 -79.56 -153.00 9 B ASP 52 -142.16 15.94 9 B THR 66 63.53 153.94 9 B ARG 74 68.44 -63.33 10 A GLU 676 -77.13 48.67 10 A PRO 680 -57.81 13.21 10 A ASP 684 58.49 -20.05 10 A GLU 692 -79.49 39.15 10 A GLU 696 -47.60 -13.59 10 B LEU 8 -63.43 13.02 10 B PHE 45 -147.78 48.98 10 B ALA 46 128.51 8.81 10 B LYS 48 -80.34 39.83 10 B GLN 49 -25.20 112.87 10 B ASP 52 -78.76 20.37 10 B ARG 54 -104.84 -165.05 10 B LYS 63 -62.53 -90.89 10 B GLU 64 -67.50 20.43 10 B THR 66 65.54 151.59 10 B VAL 70 -151.87 87.26 10 B LEU 73 41.44 -71.20 10 B ARG 74 61.96 -55.83 11 A GLU 676 -81.07 44.50 11 A PRO 680 -63.76 17.73 11 A ASP 684 59.27 -21.41 11 A GLU 692 -73.23 40.21 11 A GLU 696 -46.44 -13.66 11 B GLN 2 -178.28 114.44 11 B LEU 8 -65.87 17.93 11 B ALA 46 54.36 17.16 11 B LYS 48 -82.76 36.35 11 B GLN 49 -9.82 106.39 11 B GLU 51 -127.95 -144.82 11 B ARG 54 -73.52 -166.60 11 B THR 66 65.28 145.03 11 B LEU 73 61.65 -18.14 12 A PRO 680 -61.42 8.30 12 A ASP 684 64.62 -27.69 12 A GLU 692 -78.73 22.31 12 A GLU 696 -45.12 -16.85 12 B LEU 8 -68.30 19.49 12 B ALA 46 99.53 20.93 12 B GLU 51 -96.99 -153.18 12 B ASP 52 -141.50 14.18 12 B ARG 54 -111.46 -165.08 12 B GLN 62 -106.88 -169.40 12 B LYS 63 -62.09 -90.57 12 B GLU 64 -69.18 24.39 12 B THR 66 64.36 128.84 12 B ARG 74 64.58 -69.34 13 A PRO 680 -57.40 11.97 13 A ASP 684 58.78 -22.40 13 A GLU 692 -75.11 38.13 13 A GLU 696 -47.84 -13.37 13 B GLN 2 179.65 113.13 13 B LEU 8 -65.16 15.53 13 B ASP 21 -67.59 -145.53 13 B PHE 45 -150.03 61.54 13 B ALA 46 117.76 17.23 13 B LYS 48 -66.04 97.37 13 B GLU 51 -70.40 -152.71 13 B ASP 52 -140.52 15.27 13 B GLU 64 -142.77 21.07 13 B THR 66 64.57 148.72 13 B LEU 73 52.22 -6.09 13 B ARG 74 -10.40 -61.17 14 A GLU 676 -79.40 43.11 14 A PRO 680 -58.74 12.47 14 A ASP 684 65.46 -34.54 14 A PRO 687 -76.85 34.87 14 A GLU 696 -47.82 -13.94 14 B LEU 8 -62.35 12.16 14 B ALA 46 -178.17 25.11 14 B GLU 51 -84.37 -158.25 14 B LYS 63 -62.50 -91.98 14 B GLU 64 -66.14 21.26 14 B THR 66 64.70 151.42 14 B VAL 70 -153.59 88.44 14 B LEU 73 55.69 -64.67 14 B ARG 74 61.80 -48.74 15 A GLU 676 -79.02 40.28 15 A PRO 680 -62.79 14.01 15 A ASP 684 59.77 -22.69 15 A GLU 692 -76.41 36.39 15 A GLU 696 -47.39 -13.13 15 B GLN 2 170.36 111.44 15 B LEU 8 -65.44 15.86 15 B ASP 21 -71.74 -144.30 15 B ALA 46 143.99 -7.57 15 B LYS 48 -77.18 32.86 15 B GLN 49 -16.58 98.36 15 B GLU 51 -97.93 -151.31 15 B ASP 52 -142.20 15.50 15 B ARG 54 -115.49 -167.02 15 B ASN 60 48.77 25.83 15 B GLU 64 -143.01 23.06 15 B THR 66 64.30 146.07 15 B LEU 73 60.07 -25.30 15 B ARG 74 58.69 -68.42 16 A GLU 676 -79.28 45.59 16 A PRO 680 -66.15 11.97 16 A ASP 684 60.40 -23.72 16 A GLU 692 -71.43 40.90 16 A GLU 696 -45.60 -15.94 16 B GLN 2 60.64 127.19 16 B PHE 4 -101.02 67.33 16 B LEU 8 -66.47 18.44 16 B PRO 19 -68.03 5.77 16 B ALA 46 56.18 17.12 16 B LYS 48 -85.40 39.06 16 B GLN 49 -17.10 110.01 16 B GLU 51 -94.18 -155.87 16 B ASP 52 -143.25 18.07 16 B ARG 54 -120.02 -163.55 16 B ASN 60 53.73 19.72 16 B THR 66 68.16 146.21 16 B VAL 70 -152.08 75.39 16 B LEU 73 54.32 -9.62 16 B ARG 74 -25.14 -53.96 17 A GLU 676 -77.38 45.52 17 A PRO 680 -67.07 15.89 17 A ASP 684 58.58 -19.60 17 A GLU 692 -71.73 22.42 17 A GLU 695 -27.42 -44.51 17 A GLU 696 -46.35 -19.82 17 B LEU 8 -66.76 16.12 17 B ALA 46 54.81 17.85 17 B GLN 49 5.89 91.59 17 B GLU 51 -95.04 -151.72 17 B ASP 52 -143.77 16.90 17 B ARG 54 -117.38 -160.36 17 B GLN 62 -100.14 -166.98 17 B LYS 63 -62.81 -90.97 17 B GLU 64 -67.82 23.09 17 B THR 66 63.98 148.75 17 B VAL 70 -156.45 80.35 17 B LEU 73 56.92 -15.76 17 B ARG 74 60.02 -57.14 18 A GLU 676 -78.09 46.92 18 A PRO 680 -61.21 13.22 18 A ASP 684 57.95 -17.40 18 A GLU 692 -73.70 25.89 18 A GLU 696 -45.18 -16.24 18 B LEU 8 -67.07 16.76 18 B ASP 21 -71.97 -139.15 18 B ALA 46 -175.75 24.32 18 B LYS 48 -85.20 38.83 18 B GLN 49 -21.57 110.24 18 B GLU 51 -81.68 -156.97 18 B ASP 52 -140.14 15.27 18 B ARG 54 -111.27 -163.65 18 B LYS 63 -63.02 -91.08 18 B GLU 64 -67.34 21.72 18 B THR 66 63.66 148.21 18 B ARG 74 57.25 -49.36 19 A GLU 676 -78.70 49.42 19 A GLU 677 49.26 28.90 19 A PRO 680 -64.69 8.38 19 A ASP 684 61.27 -24.58 19 A GLU 692 -73.64 39.80 19 B GLU 51 -82.97 -154.74 19 B ASP 52 -141.39 16.07 19 B ARG 54 -79.73 -160.42 19 B LYS 63 -61.59 -91.43 19 B GLU 64 -68.06 23.61 19 B THR 66 65.76 131.74 19 B VAL 70 -143.33 58.65 19 B LEU 73 56.29 -10.85 19 B ARG 74 -24.10 -53.64 20 A PRO 680 -63.89 18.72 20 A ASP 684 61.68 -23.53 20 A PRO 687 -74.30 34.08 20 A GLU 692 -75.44 22.93 20 A GLU 695 -14.91 -57.11 20 A GLU 696 -46.91 -16.27 20 B LEU 8 -65.53 14.79 20 B ARG 42 -140.74 40.44 20 B ALA 46 112.26 20.83 20 B GLN 49 -59.01 105.43 20 B GLU 51 -95.52 -148.45 20 B ASP 52 -146.06 14.92 20 B ARG 54 -119.48 -165.23 20 B LYS 63 -63.73 -93.73 20 B GLU 64 -67.87 23.83 20 B THR 66 64.12 138.48 20 B ARG 74 -134.95 -59.29 N DNA polymerase iota, Ubiquitin lowest energy, model 1 Solution Structure of UBM2 of murine Polymerase iota in Complex with Ubiquitin 1 N N 2 N N A PRO 687 A PRO 20 HELX_P A GLU 692 A GLU 25 1 1 6 A GLU 695 A GLU 28 HELX_P A ARG 707 A ARG 40 1 2 13 B PRO 37 B PRO 37 HELX_P B ASP 39 B ASP 39 5 4 3 B LEU 56 B LEU 56 HELX_P B ASN 60 B ASN 60 5 5 5 PROTEIN BINDING/SIGNALING PROTEIN polymerase iota, ubiquitin, ubiquitin-binding motif, UBM, TLS, PROTEIN BINDING-SIGNALING PROTEIN complex A PHE 681 A PHE 14 1 A PRO 682 A PRO 15 -7.08 A PHE 681 A PHE 14 2 A PRO 682 A PRO 15 -7.48 A PHE 681 A PHE 14 3 A PRO 682 A PRO 15 -8.56 A PHE 681 A PHE 14 4 A PRO 682 A PRO 15 -8.39 A PHE 681 A PHE 14 5 A PRO 682 A PRO 15 -7.25 A PHE 681 A PHE 14 6 A PRO 682 A PRO 15 -6.41 A PHE 681 A PHE 14 7 A PRO 682 A PRO 15 -7.60 A PHE 681 A PHE 14 8 A PRO 682 A PRO 15 -6.41 A PHE 681 A PHE 14 9 A PRO 682 A PRO 15 -8.37 A PHE 681 A PHE 14 10 A PRO 682 A PRO 15 -8.08 A PHE 681 A PHE 14 11 A PRO 682 A PRO 15 -6.64 A PHE 681 A PHE 14 12 A PRO 682 A PRO 15 -10.46 A PHE 681 A PHE 14 13 A PRO 682 A PRO 15 -7.50 A PHE 681 A PHE 14 14 A PRO 682 A PRO 15 -7.27 A PHE 681 A PHE 14 15 A PRO 682 A PRO 15 -7.46 A PHE 681 A PHE 14 16 A PRO 682 A PRO 15 -6.65 A PHE 681 A PHE 14 17 A PRO 682 A PRO 15 -6.80 A PHE 681 A PHE 14 18 A PRO 682 A PRO 15 -8.02 A PHE 681 A PHE 14 19 A PRO 682 A PRO 15 -7.46 A PHE 681 A PHE 14 20 A PRO 682 A PRO 15 -5.81 POLI_MOUSE UNP 1 673 Q6R3M4 DSAEEKLPFPPDIDPQVFYELPEEVQKELMAEWERAGAARPSAHR UBIQ_HUMAN UNP 2 1 P62988 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 673 717 2KWU 673 717 Q6R3M4 A 1 6 50 1 76 2KWU 1 76 P62988 B 2 1 76 1 EXPRESSION TAG GLY 668 2KWU A Q6R3M4 UNP 1 1 EXPRESSION TAG SER 669 2KWU A Q6R3M4 UNP 2 1 EXPRESSION TAG PRO 670 2KWU A Q6R3M4 UNP 3 1 EXPRESSION TAG GLU 671 2KWU A Q6R3M4 UNP 4 1 EXPRESSION TAG PHE 672 2KWU A Q6R3M4 UNP 5 5 anti-parallel parallel anti-parallel anti-parallel B THR 12 B THR 12 B GLU 16 B GLU 16 B GLN 2 B GLN 2 B LYS 6 B LYS 6 B THR 66 B THR 66 B LEU 71 B LEU 71 B GLN 41 B GLN 41 B PHE 45 B PHE 45 B LYS 48 B LYS 48 B GLN 49 B GLN 49 1 P 1