1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Burschowsky, D.
Rudolf, F.
Rabut, G.
Herrmann, T.
Peter, M.
Wider, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
286
1364
1373
10.1074/jbc.M110.135038
20929865
Structural analysis of the conserved ubiquitin-binding motifs (UBMs) of the translesion polymerase iota in complex with ubiquitin.
2011
5704.247
DNA polymerase iota
C-terminal ubiquitin-binding motif (UNP residues 673-717)
1
man
polymer
8576.831
Ubiquitin
1
man
polymer
Rad30 homolog B
no
no
GSPEFDSAEEKLPFPPDIDPQVFYELPEEVQKELMAEWERAGAARPSAHR
GSPEFDSAEEKLPFPPDIDPQVFYELPEEVQKELMAEWERAGAARPSAHR
A
polypeptide(L)
no
no
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Poli, Rad30b
10090
Mus musculus
562
Escherichia coli
BL21 Star DE3
pGEX-4T-1
human
sample
RPS27A, UBA80, UBCEP1, UBA52, UBCEP2, UBB, UBC
9606
Homo sapiens
562
Escherichia coli
BL21 Star DE3
pET-19b
repository
Initial release
Version format compliance
1
0
2010-10-06
1
1
2011-07-13
HELIX:
DETERMINATION METHOD: AUTHOR
SHEET
DETERMINATION METHOD: AUTHOR
BMRB
Y
RCSB
2010-04-19
REL
REL
2758
672
548
778
760
structures with the lowest energy
200
20
3D HNCACB
3D 1H-15N NOESY
3D 1H-15N TOCSY
3D 1H-13C NOESY
3D HCCH-COSY
2D 1H-15N HSQC
2D 1H-13C HSQC
3D HNCACB
3D 1H-15N NOESY
3D 1H-15N TOCSY
3D 1H-13C NOESY
3D HCCH-COSY
2D 1H-15N HSQC
2D 1H-13C HSQC
3D 1H-13C-filtered-13C-edited NOESY
3D 1H-13C-filtered-13C-edited NOESY
3D 1H-13C-filtered-13C-edited NOESY
3D 1H-13C-AROMATIC NOESY
1-2
mM
[U-99% 15N]
4-8
mM
25
mM
25
mM
100
mM
2
mM
0.15
mM
0.2
%
1-2
mM
[U-95% 13C; U-99% 15N]
4-8
mM
25
mM
25
mM
100
mM
2
mM
0.15
mM
0.2
%
4-8
mM
1-2
mM
[U-99% 15N]
25
mM
25
mM
100
mM
2
mM
0.15
mM
0.2
%
4-8
mM
1-2
mM
[U-95% 13C; U-99% 15N]
25
mM
25
mM
100
mM
2
mM
0.15
mM
0.2
%
1-2
mM
4-8
mM
[U-95% 13C; U-99% 15N]
25
mM
25
mM
100
mM
2
mM
0.15
mM
0.2
%
0.189
6.0
ambient
288
K
molecular dynamics
1
lowest energy
1-2 mM [U-99% 15N] DNA polymerase iota UBM2, 4-8 mM Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O
95% H2O/5% D2O
1-2 mM [U-95% 13C; U-99% 15N] DNA polymerase iota UBM2, 4-8 mM Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O
95% H2O/5% D2O
4-8 mM DNA polymerase iota UBM2, 1-2 mM [U-99% 15N] Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O
95% H2O/5% D2O
4-8 mM DNA polymerase iota UBM2, 1-2 mM [U-95% 13C; U-99% 15N] Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O
95% H2O/5% D2O
1.7 mM DNA polymerase iota UBM2, 6.8 mM [U-95% 13C; U-99% 15N] Ubiquitin, 25 mM sodium phosphate, 25 mM sodium chloride, 100 mM potassium chloride, 2 mM CHAPS, 0.15 mM PMSF, 0.2 % w/v sodium azide, 95% H2O/5% D2O
95% H2O/5% D2O
Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm
refinement
AMBER
9
Bruker Biospin
collection
TOPSPIN
2.1
Bruker Biospin
processing
TOPSPIN
2.1
Koradi, Billeter and Wuthrich
geometry optimization
Molmol
2k.2
T. Herrmann
peak picking
UNIO'08
1.0.4
T. Herrmann
chemical shift assignment
UNIO'08
1.0.4
T. Herrmann
structure solution
UNIO'08
1.0.4
Guntert, Braun and Wuthrich
structure solution
DYANA
R. Keller
data analysis
CARA
1.8.4
R. Keller
chemical shift assignment
CARA
1.8.4
600
Bruker
Avance
Bruker Avance
750
Bruker
Avance
Bruker Avance
900
Bruker
Avance
Bruker Avance
n
1
668
A
n
2
669
A
n
3
670
A
n
4
671
A
n
5
672
A
n
6
673
A
n
7
674
A
ALA
675
n
8
ALA
675
A
GLU
676
n
9
GLU
676
A
GLU
677
n
10
GLU
677
A
LYS
678
n
11
LYS
678
A
LEU
679
n
12
LEU
679
A
PRO
680
n
13
PRO
680
A
PHE
681
n
14
PHE
681
A
PRO
682
n
15
PRO
682
A
PRO
683
n
16
PRO
683
A
ASP
684
n
17
ASP
684
A
ILE
685
n
18
ILE
685
A
ASP
686
n
19
ASP
686
A
PRO
687
n
20
PRO
687
A
GLN
688
n
21
GLN
688
A
VAL
689
n
22
VAL
689
A
PHE
690
n
23
PHE
690
A
TYR
691
n
24
TYR
691
A
GLU
692
n
25
GLU
692
A
LEU
693
n
26
LEU
693
A
PRO
694
n
27
PRO
694
A
GLU
695
n
28
GLU
695
A
GLU
696
n
29
GLU
696
A
VAL
697
n
30
VAL
697
A
GLN
698
n
31
GLN
698
A
LYS
699
n
32
LYS
699
A
GLU
700
n
33
GLU
700
A
LEU
701
n
34
LEU
701
A
MET
702
n
35
MET
702
A
ALA
703
n
36
ALA
703
A
GLU
704
n
37
GLU
704
A
TRP
705
n
38
TRP
705
A
GLU
706
n
39
GLU
706
A
ARG
707
n
40
ARG
707
A
ALA
708
n
41
ALA
708
A
GLY
709
n
42
GLY
709
A
ALA
710
n
43
ALA
710
A
n
44
711
A
n
45
712
A
n
46
713
A
n
47
714
A
n
48
715
A
n
49
716
A
n
50
717
A
MET
1
n
1
MET
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
PHE
4
n
4
PHE
4
B
VAL
5
n
5
VAL
5
B
LYS
6
n
6
LYS
6
B
THR
7
n
7
THR
7
B
LEU
8
n
8
LEU
8
B
THR
9
n
9
THR
9
B
GLY
10
n
10
GLY
10
B
LYS
11
n
11
LYS
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
THR
14
n
14
THR
14
B
LEU
15
n
15
LEU
15
B
GLU
16
n
16
GLU
16
B
VAL
17
n
17
VAL
17
B
GLU
18
n
18
GLU
18
B
PRO
19
n
19
PRO
19
B
SER
20
n
20
SER
20
B
ASP
21
n
21
ASP
21
B
THR
22
n
22
THR
22
B
ILE
23
n
23
ILE
23
B
GLU
24
n
24
GLU
24
B
ASN
25
n
25
ASN
25
B
VAL
26
n
26
VAL
26
B
LYS
27
n
27
LYS
27
B
ALA
28
n
28
ALA
28
B
LYS
29
n
29
LYS
29
B
ILE
30
n
30
ILE
30
B
GLN
31
n
31
GLN
31
B
ASP
32
n
32
ASP
32
B
LYS
33
n
33
LYS
33
B
GLU
34
n
34
GLU
34
B
GLY
35
n
35
GLY
35
B
ILE
36
n
36
ILE
36
B
PRO
37
n
37
PRO
37
B
PRO
38
n
38
PRO
38
B
ASP
39
n
39
ASP
39
B
GLN
40
n
40
GLN
40
B
GLN
41
n
41
GLN
41
B
ARG
42
n
42
ARG
42
B
LEU
43
n
43
LEU
43
B
ILE
44
n
44
ILE
44
B
PHE
45
n
45
PHE
45
B
ALA
46
n
46
ALA
46
B
GLY
47
n
47
GLY
47
B
LYS
48
n
48
LYS
48
B
GLN
49
n
49
GLN
49
B
LEU
50
n
50
LEU
50
B
GLU
51
n
51
GLU
51
B
ASP
52
n
52
ASP
52
B
GLY
53
n
53
GLY
53
B
ARG
54
n
54
ARG
54
B
THR
55
n
55
THR
55
B
LEU
56
n
56
LEU
56
B
SER
57
n
57
SER
57
B
ASP
58
n
58
ASP
58
B
TYR
59
n
59
TYR
59
B
ASN
60
n
60
ASN
60
B
ILE
61
n
61
ILE
61
B
GLN
62
n
62
GLN
62
B
LYS
63
n
63
LYS
63
B
GLU
64
n
64
GLU
64
B
SER
65
n
65
SER
65
B
THR
66
n
66
THR
66
B
LEU
67
n
67
LEU
67
B
HIS
68
n
68
HIS
68
B
LEU
69
n
69
LEU
69
B
VAL
70
n
70
VAL
70
B
LEU
71
n
71
LEU
71
B
ARG
72
n
72
ARG
72
B
LEU
73
n
73
LEU
73
B
ARG
74
n
74
ARG
74
B
GLY
75
n
75
GLY
75
B
GLY
76
n
76
GLY
76
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
LEU
15
B
N
LEU
15
B
O
ILE
3
B
O
ILE
3
B
O
PHE
4
B
O
PHE
4
B
N
LEU
67
B
N
LEU
67
B
N
VAL
70
B
N
VAL
70
B
O
ARG
42
B
O
ARG
42
B
N
PHE
45
B
N
PHE
45
B
O
LYS
48
B
O
LYS
48
1
A
GLY
668
A
GLY
1
1
Y
1
A
SER
669
A
SER
2
1
Y
1
A
PRO
670
A
PRO
3
1
Y
1
A
GLU
671
A
GLU
4
1
Y
1
A
PHE
672
A
PHE
5
1
Y
1
A
ASP
673
A
ASP
6
1
Y
1
A
SER
674
A
SER
7
1
Y
1
A
ALA
711
A
ALA
44
1
Y
1
A
ARG
712
A
ARG
45
1
Y
1
A
PRO
713
A
PRO
46
1
Y
1
A
SER
714
A
SER
47
1
Y
1
A
ALA
715
A
ALA
48
1
Y
1
A
HIS
716
A
HIS
49
1
Y
1
A
ARG
717
A
ARG
50
1
Y
2
A
GLY
668
A
GLY
1
1
Y
2
A
SER
669
A
SER
2
1
Y
2
A
PRO
670
A
PRO
3
1
Y
2
A
GLU
671
A
GLU
4
1
Y
2
A
PHE
672
A
PHE
5
1
Y
2
A
ASP
673
A
ASP
6
1
Y
2
A
SER
674
A
SER
7
1
Y
2
A
ALA
711
A
ALA
44
1
Y
2
A
ARG
712
A
ARG
45
1
Y
2
A
PRO
713
A
PRO
46
1
Y
2
A
SER
714
A
SER
47
1
Y
2
A
ALA
715
A
ALA
48
1
Y
2
A
HIS
716
A
HIS
49
1
Y
2
A
ARG
717
A
ARG
50
1
Y
3
A
GLY
668
A
GLY
1
1
Y
3
A
SER
669
A
SER
2
1
Y
3
A
PRO
670
A
PRO
3
1
Y
3
A
GLU
671
A
GLU
4
1
Y
3
A
PHE
672
A
PHE
5
1
Y
3
A
ASP
673
A
ASP
6
1
Y
3
A
SER
674
A
SER
7
1
Y
3
A
ALA
711
A
ALA
44
1
Y
3
A
ARG
712
A
ARG
45
1
Y
3
A
PRO
713
A
PRO
46
1
Y
3
A
SER
714
A
SER
47
1
Y
3
A
ALA
715
A
ALA
48
1
Y
3
A
HIS
716
A
HIS
49
1
Y
3
A
ARG
717
A
ARG
50
1
Y
4
A
GLY
668
A
GLY
1
1
Y
4
A
SER
669
A
SER
2
1
Y
4
A
PRO
670
A
PRO
3
1
Y
4
A
GLU
671
A
GLU
4
1
Y
4
A
PHE
672
A
PHE
5
1
Y
4
A
ASP
673
A
ASP
6
1
Y
4
A
SER
674
A
SER
7
1
Y
4
A
ALA
711
A
ALA
44
1
Y
4
A
ARG
712
A
ARG
45
1
Y
4
A
PRO
713
A
PRO
46
1
Y
4
A
SER
714
A
SER
47
1
Y
4
A
ALA
715
A
ALA
48
1
Y
4
A
HIS
716
A
HIS
49
1
Y
4
A
ARG
717
A
ARG
50
1
Y
5
A
GLY
668
A
GLY
1
1
Y
5
A
SER
669
A
SER
2
1
Y
5
A
PRO
670
A
PRO
3
1
Y
5
A
GLU
671
A
GLU
4
1
Y
5
A
PHE
672
A
PHE
5
1
Y
5
A
ASP
673
A
ASP
6
1
Y
5
A
SER
674
A
SER
7
1
Y
5
A
ALA
711
A
ALA
44
1
Y
5
A
ARG
712
A
ARG
45
1
Y
5
A
PRO
713
A
PRO
46
1
Y
5
A
SER
714
A
SER
47
1
Y
5
A
ALA
715
A
ALA
48
1
Y
5
A
HIS
716
A
HIS
49
1
Y
5
A
ARG
717
A
ARG
50
1
Y
6
A
GLY
668
A
GLY
1
1
Y
6
A
SER
669
A
SER
2
1
Y
6
A
PRO
670
A
PRO
3
1
Y
6
A
GLU
671
A
GLU
4
1
Y
6
A
PHE
672
A
PHE
5
1
Y
6
A
ASP
673
A
ASP
6
1
Y
6
A
SER
674
A
SER
7
1
Y
6
A
ALA
711
A
ALA
44
1
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6
A
ARG
712
A
ARG
45
1
Y
6
A
PRO
713
A
PRO
46
1
Y
6
A
SER
714
A
SER
47
1
Y
6
A
ALA
715
A
ALA
48
1
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6
A
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716
A
HIS
49
1
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6
A
ARG
717
A
ARG
50
1
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7
A
GLY
668
A
GLY
1
1
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7
A
SER
669
A
SER
2
1
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7
A
PRO
670
A
PRO
3
1
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7
A
GLU
671
A
GLU
4
1
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7
A
PHE
672
A
PHE
5
1
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7
A
ASP
673
A
ASP
6
1
Y
7
A
SER
674
A
SER
7
1
Y
7
A
ALA
711
A
ALA
44
1
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7
A
ARG
712
A
ARG
45
1
Y
7
A
PRO
713
A
PRO
46
1
Y
7
A
SER
714
A
SER
47
1
Y
7
A
ALA
715
A
ALA
48
1
Y
7
A
HIS
716
A
HIS
49
1
Y
7
A
ARG
717
A
ARG
50
1
Y
8
A
GLY
668
A
GLY
1
1
Y
8
A
SER
669
A
SER
2
1
Y
8
A
PRO
670
A
PRO
3
1
Y
8
A
GLU
671
A
GLU
4
1
Y
8
A
PHE
672
A
PHE
5
1
Y
8
A
ASP
673
A
ASP
6
1
Y
8
A
SER
674
A
SER
7
1
Y
8
A
ALA
711
A
ALA
44
1
Y
8
A
ARG
712
A
ARG
45
1
Y
8
A
PRO
713
A
PRO
46
1
Y
8
A
SER
714
A
SER
47
1
Y
8
A
ALA
715
A
ALA
48
1
Y
8
A
HIS
716
A
HIS
49
1
Y
8
A
ARG
717
A
ARG
50
1
Y
9
A
GLY
668
A
GLY
1
1
Y
9
A
SER
669
A
SER
2
1
Y
9
A
PRO
670
A
PRO
3
1
Y
9
A
GLU
671
A
GLU
4
1
Y
9
A
PHE
672
A
PHE
5
1
Y
9
A
ASP
673
A
ASP
6
1
Y
9
A
SER
674
A
SER
7
1
Y
9
A
ALA
711
A
ALA
44
1
Y
9
A
ARG
712
A
ARG
45
1
Y
9
A
PRO
713
A
PRO
46
1
Y
9
A
SER
714
A
SER
47
1
Y
9
A
ALA
715
A
ALA
48
1
Y
9
A
HIS
716
A
HIS
49
1
Y
9
A
ARG
717
A
ARG
50
1
Y
10
A
GLY
668
A
GLY
1
1
Y
10
A
SER
669
A
SER
2
1
Y
10
A
PRO
670
A
PRO
3
1
Y
10
A
GLU
671
A
GLU
4
1
Y
10
A
PHE
672
A
PHE
5
1
Y
10
A
ASP
673
A
ASP
6
1
Y
10
A
SER
674
A
SER
7
1
Y
10
A
ALA
711
A
ALA
44
1
Y
10
A
ARG
712
A
ARG
45
1
Y
10
A
PRO
713
A
PRO
46
1
Y
10
A
SER
714
A
SER
47
1
Y
10
A
ALA
715
A
ALA
48
1
Y
10
A
HIS
716
A
HIS
49
1
Y
10
A
ARG
717
A
ARG
50
1
Y
11
A
GLY
668
A
GLY
1
1
Y
11
A
SER
669
A
SER
2
1
Y
11
A
PRO
670
A
PRO
3
1
Y
11
A
GLU
671
A
GLU
4
1
Y
11
A
PHE
672
A
PHE
5
1
Y
11
A
ASP
673
A
ASP
6
1
Y
11
A
SER
674
A
SER
7
1
Y
11
A
ALA
711
A
ALA
44
1
Y
11
A
ARG
712
A
ARG
45
1
Y
11
A
PRO
713
A
PRO
46
1
Y
11
A
SER
714
A
SER
47
1
Y
11
A
ALA
715
A
ALA
48
1
Y
11
A
HIS
716
A
HIS
49
1
Y
11
A
ARG
717
A
ARG
50
1
Y
12
A
GLY
668
A
GLY
1
1
Y
12
A
SER
669
A
SER
2
1
Y
12
A
PRO
670
A
PRO
3
1
Y
12
A
GLU
671
A
GLU
4
1
Y
12
A
PHE
672
A
PHE
5
1
Y
12
A
ASP
673
A
ASP
6
1
Y
12
A
SER
674
A
SER
7
1
Y
12
A
ALA
711
A
ALA
44
1
Y
12
A
ARG
712
A
ARG
45
1
Y
12
A
PRO
713
A
PRO
46
1
Y
12
A
SER
714
A
SER
47
1
Y
12
A
ALA
715
A
ALA
48
1
Y
12
A
HIS
716
A
HIS
49
1
Y
12
A
ARG
717
A
ARG
50
1
Y
13
A
GLY
668
A
GLY
1
1
Y
13
A
SER
669
A
SER
2
1
Y
13
A
PRO
670
A
PRO
3
1
Y
13
A
GLU
671
A
GLU
4
1
Y
13
A
PHE
672
A
PHE
5
1
Y
13
A
ASP
673
A
ASP
6
1
Y
13
A
SER
674
A
SER
7
1
Y
13
A
ALA
711
A
ALA
44
1
Y
13
A
ARG
712
A
ARG
45
1
Y
13
A
PRO
713
A
PRO
46
1
Y
13
A
SER
714
A
SER
47
1
Y
13
A
ALA
715
A
ALA
48
1
Y
13
A
HIS
716
A
HIS
49
1
Y
13
A
ARG
717
A
ARG
50
1
Y
14
A
GLY
668
A
GLY
1
1
Y
14
A
SER
669
A
SER
2
1
Y
14
A
PRO
670
A
PRO
3
1
Y
14
A
GLU
671
A
GLU
4
1
Y
14
A
PHE
672
A
PHE
5
1
Y
14
A
ASP
673
A
ASP
6
1
Y
14
A
SER
674
A
SER
7
1
Y
14
A
ALA
711
A
ALA
44
1
Y
14
A
ARG
712
A
ARG
45
1
Y
14
A
PRO
713
A
PRO
46
1
Y
14
A
SER
714
A
SER
47
1
Y
14
A
ALA
715
A
ALA
48
1
Y
14
A
HIS
716
A
HIS
49
1
Y
14
A
ARG
717
A
ARG
50
1
Y
15
A
GLY
668
A
GLY
1
1
Y
15
A
SER
669
A
SER
2
1
Y
15
A
PRO
670
A
PRO
3
1
Y
15
A
GLU
671
A
GLU
4
1
Y
15
A
PHE
672
A
PHE
5
1
Y
15
A
ASP
673
A
ASP
6
1
Y
15
A
SER
674
A
SER
7
1
Y
15
A
ALA
711
A
ALA
44
1
Y
15
A
ARG
712
A
ARG
45
1
Y
15
A
PRO
713
A
PRO
46
1
Y
15
A
SER
714
A
SER
47
1
Y
15
A
ALA
715
A
ALA
48
1
Y
15
A
HIS
716
A
HIS
49
1
Y
15
A
ARG
717
A
ARG
50
1
Y
16
A
GLY
668
A
GLY
1
1
Y
16
A
SER
669
A
SER
2
1
Y
16
A
PRO
670
A
PRO
3
1
Y
16
A
GLU
671
A
GLU
4
1
Y
16
A
PHE
672
A
PHE
5
1
Y
16
A
ASP
673
A
ASP
6
1
Y
16
A
SER
674
A
SER
7
1
Y
16
A
ALA
711
A
ALA
44
1
Y
16
A
ARG
712
A
ARG
45
1
Y
16
A
PRO
713
A
PRO
46
1
Y
16
A
SER
714
A
SER
47
1
Y
16
A
ALA
715
A
ALA
48
1
Y
16
A
HIS
716
A
HIS
49
1
Y
16
A
ARG
717
A
ARG
50
1
Y
17
A
GLY
668
A
GLY
1
1
Y
17
A
SER
669
A
SER
2
1
Y
17
A
PRO
670
A
PRO
3
1
Y
17
A
GLU
671
A
GLU
4
1
Y
17
A
PHE
672
A
PHE
5
1
Y
17
A
ASP
673
A
ASP
6
1
Y
17
A
SER
674
A
SER
7
1
Y
17
A
ALA
711
A
ALA
44
1
Y
17
A
ARG
712
A
ARG
45
1
Y
17
A
PRO
713
A
PRO
46
1
Y
17
A
SER
714
A
SER
47
1
Y
17
A
ALA
715
A
ALA
48
1
Y
17
A
HIS
716
A
HIS
49
1
Y
17
A
ARG
717
A
ARG
50
1
Y
18
A
GLY
668
A
GLY
1
1
Y
18
A
SER
669
A
SER
2
1
Y
18
A
PRO
670
A
PRO
3
1
Y
18
A
GLU
671
A
GLU
4
1
Y
18
A
PHE
672
A
PHE
5
1
Y
18
A
ASP
673
A
ASP
6
1
Y
18
A
SER
674
A
SER
7
1
Y
18
A
ALA
711
A
ALA
44
1
Y
18
A
ARG
712
A
ARG
45
1
Y
18
A
PRO
713
A
PRO
46
1
Y
18
A
SER
714
A
SER
47
1
Y
18
A
ALA
715
A
ALA
48
1
Y
18
A
HIS
716
A
HIS
49
1
Y
18
A
ARG
717
A
ARG
50
1
Y
19
A
GLY
668
A
GLY
1
1
Y
19
A
SER
669
A
SER
2
1
Y
19
A
PRO
670
A
PRO
3
1
Y
19
A
GLU
671
A
GLU
4
1
Y
19
A
PHE
672
A
PHE
5
1
Y
19
A
ASP
673
A
ASP
6
1
Y
19
A
SER
674
A
SER
7
1
Y
19
A
ALA
711
A
ALA
44
1
Y
19
A
ARG
712
A
ARG
45
1
Y
19
A
PRO
713
A
PRO
46
1
Y
19
A
SER
714
A
SER
47
1
Y
19
A
ALA
715
A
ALA
48
1
Y
19
A
HIS
716
A
HIS
49
1
Y
19
A
ARG
717
A
ARG
50
1
Y
20
A
GLY
668
A
GLY
1
1
Y
20
A
SER
669
A
SER
2
1
Y
20
A
PRO
670
A
PRO
3
1
Y
20
A
GLU
671
A
GLU
4
1
Y
20
A
PHE
672
A
PHE
5
1
Y
20
A
ASP
673
A
ASP
6
1
Y
20
A
SER
674
A
SER
7
1
Y
20
A
ALA
711
A
ALA
44
1
Y
20
A
ARG
712
A
ARG
45
1
Y
20
A
PRO
713
A
PRO
46
1
Y
20
A
SER
714
A
SER
47
1
Y
20
A
ALA
715
A
ALA
48
1
Y
20
A
HIS
716
A
HIS
49
1
Y
20
A
ARG
717
A
ARG
50
1
Y
1
A
GLU
676
-77.42
33.53
1
A
LEU
679
-58.47
170.07
1
A
PRO
680
-60.89
10.60
1
A
ASP
684
60.54
-25.00
1
A
PRO
687
-76.16
32.97
1
A
GLU
692
-80.17
37.64
1
A
GLU
696
-46.91
-15.45
1
B
GLN
2
-179.39
116.53
1
B
LEU
8
-64.00
13.14
1
B
PRO
19
-69.68
6.12
1
B
ARG
42
-144.13
55.63
1
B
ALA
46
54.33
18.59
1
B
LYS
48
-79.50
21.64
1
B
GLN
49
10.81
92.57
1
B
GLU
51
-100.15
-148.10
1
B
ASP
52
-149.24
22.46
1
B
ARG
54
-117.32
-164.74
1
B
GLU
64
-141.05
25.86
1
B
THR
66
62.17
141.21
1
B
ARG
74
64.28
-65.85
2
A
GLU
677
-66.19
17.03
2
A
PRO
680
-65.35
12.56
2
A
ASP
684
60.80
-21.50
2
A
GLU
692
-72.40
41.62
2
B
GLN
2
-170.04
-173.07
2
B
ASP
21
-70.48
-143.04
2
B
ALA
46
179.43
26.23
2
B
LYS
48
-63.94
94.98
2
B
LEU
50
-49.85
152.98
2
B
ARG
54
-120.81
-167.68
2
B
ILE
61
-38.13
122.74
2
B
GLU
64
-148.92
24.33
2
B
THR
66
64.56
140.82
2
B
VAL
70
-66.87
83.04
2
B
LEU
73
47.90
-63.99
2
B
ARG
74
60.80
-57.92
3
A
GLU
676
-76.92
42.65
3
A
PRO
680
-63.25
15.00
3
A
ASP
684
59.63
-18.47
3
A
GLU
692
-72.74
24.24
3
A
GLU
695
-16.96
-55.38
3
A
GLU
696
-48.21
-17.91
3
B
LEU
8
-67.40
17.48
3
B
ALA
46
-178.47
25.41
3
B
LYS
48
-69.68
76.12
3
B
ARG
54
-119.08
-169.06
3
B
LYS
63
-63.59
-90.28
3
B
GLU
64
-67.37
21.98
3
B
THR
66
64.15
146.58
3
B
VAL
70
-152.24
73.74
3
B
LEU
73
47.81
-75.93
3
B
ARG
74
64.39
-55.39
4
A
GLU
676
-80.66
39.13
4
A
PRO
680
-59.82
9.59
4
A
ASP
684
59.35
-22.76
4
A
GLU
692
-78.72
39.61
4
B
GLN
2
-176.20
113.31
4
B
LEU
8
-69.99
20.66
4
B
ASP
21
-67.84
-145.67
4
B
ALA
46
55.88
16.22
4
B
LYS
48
-85.98
35.30
4
B
GLN
49
-8.45
105.19
4
B
GLU
51
-80.61
-155.74
4
B
ASP
52
-143.93
17.99
4
B
ARG
54
-104.24
-157.28
4
B
GLU
64
-141.03
25.53
4
B
THR
66
61.68
139.74
4
B
ARG
74
64.95
-61.96
5
A
GLU
676
-78.24
48.30
5
A
PRO
680
-58.36
11.61
5
A
ASP
684
58.07
-19.31
5
A
GLU
696
-45.49
-16.69
5
B
GLN
2
-171.47
112.18
5
B
LEU
8
-66.56
16.37
5
B
GLN
49
8.12
97.65
5
B
GLU
51
-83.29
-155.83
5
B
ARG
54
-101.34
-165.90
5
B
GLU
64
-143.82
23.20
5
B
THR
66
63.22
150.18
5
B
LEU
73
56.13
-63.44
5
B
ARG
74
60.98
-49.29
6
A
GLU
676
-77.21
45.73
6
A
PRO
680
-67.02
11.00
6
A
ASP
684
61.78
-25.67
6
A
PRO
687
-75.60
33.25
6
A
GLU
692
-79.04
35.73
6
A
GLU
696
-46.76
-15.04
6
B
GLN
2
-170.50
-170.53
6
B
LEU
8
-66.34
15.99
6
B
PRO
19
-69.47
6.05
6
B
GLU
51
-112.16
-151.09
6
B
ASP
52
-144.54
14.93
6
B
ARG
54
-115.97
-165.34
6
B
GLU
64
-152.22
21.62
6
B
THR
66
64.39
146.55
6
B
VAL
70
-151.36
76.29
6
B
LEU
73
57.91
-24.55
6
B
ARG
74
54.63
-65.03
7
A
PRO
680
-66.14
14.32
7
A
ASP
684
60.45
-22.44
7
A
GLN
688
-68.82
7.87
7
A
GLU
692
-72.64
27.01
7
A
GLU
696
-46.20
-19.49
7
B
LEU
8
-67.94
18.26
7
B
PRO
19
-69.09
5.48
7
B
ALA
46
55.74
16.41
7
B
LYS
48
-86.25
35.89
7
B
GLN
49
-10.46
106.65
7
B
GLU
51
-79.64
-155.86
7
B
ASP
52
-141.58
15.19
7
B
ARG
54
-79.54
-160.75
7
B
GLN
62
-107.34
-168.04
7
B
LYS
63
-60.91
-93.62
7
B
GLU
64
-66.02
21.48
7
B
THR
66
64.30
147.85
7
B
LEU
73
53.18
-64.54
7
B
ARG
74
59.48
-57.37
8
A
GLU
676
-76.57
45.07
8
A
PRO
680
-65.39
13.26
8
A
ASP
684
60.37
-22.95
8
A
GLU
692
-74.83
34.23
8
A
GLU
695
-28.83
-41.29
8
A
GLU
696
-48.30
-18.61
8
B
LEU
8
-71.23
24.89
8
B
ALA
46
-176.46
24.14
8
B
LYS
48
-81.35
41.38
8
B
GLN
49
-25.08
112.06
8
B
GLU
51
-83.66
-154.08
8
B
ASP
52
-140.30
14.48
8
B
ARG
54
-112.78
-164.04
8
B
GLU
64
-150.93
24.54
8
B
THR
66
65.88
136.54
8
B
LEU
73
45.43
-72.13
8
B
ARG
74
59.83
-56.41
9
A
GLU
676
-76.95
34.22
9
A
PRO
680
-59.56
12.90
9
A
ASP
684
59.73
-23.24
9
A
GLU
692
-73.84
41.24
9
A
GLU
696
-46.23
-15.26
9
B
GLN
2
-173.62
113.89
9
B
LEU
8
-67.30
15.27
9
B
ASP
21
-72.84
-138.14
9
B
ALA
46
-175.63
23.65
9
B
LYS
48
-84.09
39.69
9
B
GLN
49
-22.69
111.65
9
B
GLU
51
-79.56
-153.00
9
B
ASP
52
-142.16
15.94
9
B
THR
66
63.53
153.94
9
B
ARG
74
68.44
-63.33
10
A
GLU
676
-77.13
48.67
10
A
PRO
680
-57.81
13.21
10
A
ASP
684
58.49
-20.05
10
A
GLU
692
-79.49
39.15
10
A
GLU
696
-47.60
-13.59
10
B
LEU
8
-63.43
13.02
10
B
PHE
45
-147.78
48.98
10
B
ALA
46
128.51
8.81
10
B
LYS
48
-80.34
39.83
10
B
GLN
49
-25.20
112.87
10
B
ASP
52
-78.76
20.37
10
B
ARG
54
-104.84
-165.05
10
B
LYS
63
-62.53
-90.89
10
B
GLU
64
-67.50
20.43
10
B
THR
66
65.54
151.59
10
B
VAL
70
-151.87
87.26
10
B
LEU
73
41.44
-71.20
10
B
ARG
74
61.96
-55.83
11
A
GLU
676
-81.07
44.50
11
A
PRO
680
-63.76
17.73
11
A
ASP
684
59.27
-21.41
11
A
GLU
692
-73.23
40.21
11
A
GLU
696
-46.44
-13.66
11
B
GLN
2
-178.28
114.44
11
B
LEU
8
-65.87
17.93
11
B
ALA
46
54.36
17.16
11
B
LYS
48
-82.76
36.35
11
B
GLN
49
-9.82
106.39
11
B
GLU
51
-127.95
-144.82
11
B
ARG
54
-73.52
-166.60
11
B
THR
66
65.28
145.03
11
B
LEU
73
61.65
-18.14
12
A
PRO
680
-61.42
8.30
12
A
ASP
684
64.62
-27.69
12
A
GLU
692
-78.73
22.31
12
A
GLU
696
-45.12
-16.85
12
B
LEU
8
-68.30
19.49
12
B
ALA
46
99.53
20.93
12
B
GLU
51
-96.99
-153.18
12
B
ASP
52
-141.50
14.18
12
B
ARG
54
-111.46
-165.08
12
B
GLN
62
-106.88
-169.40
12
B
LYS
63
-62.09
-90.57
12
B
GLU
64
-69.18
24.39
12
B
THR
66
64.36
128.84
12
B
ARG
74
64.58
-69.34
13
A
PRO
680
-57.40
11.97
13
A
ASP
684
58.78
-22.40
13
A
GLU
692
-75.11
38.13
13
A
GLU
696
-47.84
-13.37
13
B
GLN
2
179.65
113.13
13
B
LEU
8
-65.16
15.53
13
B
ASP
21
-67.59
-145.53
13
B
PHE
45
-150.03
61.54
13
B
ALA
46
117.76
17.23
13
B
LYS
48
-66.04
97.37
13
B
GLU
51
-70.40
-152.71
13
B
ASP
52
-140.52
15.27
13
B
GLU
64
-142.77
21.07
13
B
THR
66
64.57
148.72
13
B
LEU
73
52.22
-6.09
13
B
ARG
74
-10.40
-61.17
14
A
GLU
676
-79.40
43.11
14
A
PRO
680
-58.74
12.47
14
A
ASP
684
65.46
-34.54
14
A
PRO
687
-76.85
34.87
14
A
GLU
696
-47.82
-13.94
14
B
LEU
8
-62.35
12.16
14
B
ALA
46
-178.17
25.11
14
B
GLU
51
-84.37
-158.25
14
B
LYS
63
-62.50
-91.98
14
B
GLU
64
-66.14
21.26
14
B
THR
66
64.70
151.42
14
B
VAL
70
-153.59
88.44
14
B
LEU
73
55.69
-64.67
14
B
ARG
74
61.80
-48.74
15
A
GLU
676
-79.02
40.28
15
A
PRO
680
-62.79
14.01
15
A
ASP
684
59.77
-22.69
15
A
GLU
692
-76.41
36.39
15
A
GLU
696
-47.39
-13.13
15
B
GLN
2
170.36
111.44
15
B
LEU
8
-65.44
15.86
15
B
ASP
21
-71.74
-144.30
15
B
ALA
46
143.99
-7.57
15
B
LYS
48
-77.18
32.86
15
B
GLN
49
-16.58
98.36
15
B
GLU
51
-97.93
-151.31
15
B
ASP
52
-142.20
15.50
15
B
ARG
54
-115.49
-167.02
15
B
ASN
60
48.77
25.83
15
B
GLU
64
-143.01
23.06
15
B
THR
66
64.30
146.07
15
B
LEU
73
60.07
-25.30
15
B
ARG
74
58.69
-68.42
16
A
GLU
676
-79.28
45.59
16
A
PRO
680
-66.15
11.97
16
A
ASP
684
60.40
-23.72
16
A
GLU
692
-71.43
40.90
16
A
GLU
696
-45.60
-15.94
16
B
GLN
2
60.64
127.19
16
B
PHE
4
-101.02
67.33
16
B
LEU
8
-66.47
18.44
16
B
PRO
19
-68.03
5.77
16
B
ALA
46
56.18
17.12
16
B
LYS
48
-85.40
39.06
16
B
GLN
49
-17.10
110.01
16
B
GLU
51
-94.18
-155.87
16
B
ASP
52
-143.25
18.07
16
B
ARG
54
-120.02
-163.55
16
B
ASN
60
53.73
19.72
16
B
THR
66
68.16
146.21
16
B
VAL
70
-152.08
75.39
16
B
LEU
73
54.32
-9.62
16
B
ARG
74
-25.14
-53.96
17
A
GLU
676
-77.38
45.52
17
A
PRO
680
-67.07
15.89
17
A
ASP
684
58.58
-19.60
17
A
GLU
692
-71.73
22.42
17
A
GLU
695
-27.42
-44.51
17
A
GLU
696
-46.35
-19.82
17
B
LEU
8
-66.76
16.12
17
B
ALA
46
54.81
17.85
17
B
GLN
49
5.89
91.59
17
B
GLU
51
-95.04
-151.72
17
B
ASP
52
-143.77
16.90
17
B
ARG
54
-117.38
-160.36
17
B
GLN
62
-100.14
-166.98
17
B
LYS
63
-62.81
-90.97
17
B
GLU
64
-67.82
23.09
17
B
THR
66
63.98
148.75
17
B
VAL
70
-156.45
80.35
17
B
LEU
73
56.92
-15.76
17
B
ARG
74
60.02
-57.14
18
A
GLU
676
-78.09
46.92
18
A
PRO
680
-61.21
13.22
18
A
ASP
684
57.95
-17.40
18
A
GLU
692
-73.70
25.89
18
A
GLU
696
-45.18
-16.24
18
B
LEU
8
-67.07
16.76
18
B
ASP
21
-71.97
-139.15
18
B
ALA
46
-175.75
24.32
18
B
LYS
48
-85.20
38.83
18
B
GLN
49
-21.57
110.24
18
B
GLU
51
-81.68
-156.97
18
B
ASP
52
-140.14
15.27
18
B
ARG
54
-111.27
-163.65
18
B
LYS
63
-63.02
-91.08
18
B
GLU
64
-67.34
21.72
18
B
THR
66
63.66
148.21
18
B
ARG
74
57.25
-49.36
19
A
GLU
676
-78.70
49.42
19
A
GLU
677
49.26
28.90
19
A
PRO
680
-64.69
8.38
19
A
ASP
684
61.27
-24.58
19
A
GLU
692
-73.64
39.80
19
B
GLU
51
-82.97
-154.74
19
B
ASP
52
-141.39
16.07
19
B
ARG
54
-79.73
-160.42
19
B
LYS
63
-61.59
-91.43
19
B
GLU
64
-68.06
23.61
19
B
THR
66
65.76
131.74
19
B
VAL
70
-143.33
58.65
19
B
LEU
73
56.29
-10.85
19
B
ARG
74
-24.10
-53.64
20
A
PRO
680
-63.89
18.72
20
A
ASP
684
61.68
-23.53
20
A
PRO
687
-74.30
34.08
20
A
GLU
692
-75.44
22.93
20
A
GLU
695
-14.91
-57.11
20
A
GLU
696
-46.91
-16.27
20
B
LEU
8
-65.53
14.79
20
B
ARG
42
-140.74
40.44
20
B
ALA
46
112.26
20.83
20
B
GLN
49
-59.01
105.43
20
B
GLU
51
-95.52
-148.45
20
B
ASP
52
-146.06
14.92
20
B
ARG
54
-119.48
-165.23
20
B
LYS
63
-63.73
-93.73
20
B
GLU
64
-67.87
23.83
20
B
THR
66
64.12
138.48
20
B
ARG
74
-134.95
-59.29
N
DNA polymerase iota, Ubiquitin
lowest energy, model 1
Solution Structure of UBM2 of murine Polymerase iota in Complex with Ubiquitin
1
N
N
2
N
N
A
PRO
687
A
PRO
20
HELX_P
A
GLU
692
A
GLU
25
1
1
6
A
GLU
695
A
GLU
28
HELX_P
A
ARG
707
A
ARG
40
1
2
13
B
PRO
37
B
PRO
37
HELX_P
B
ASP
39
B
ASP
39
5
4
3
B
LEU
56
B
LEU
56
HELX_P
B
ASN
60
B
ASN
60
5
5
5
PROTEIN BINDING/SIGNALING PROTEIN
polymerase iota, ubiquitin, ubiquitin-binding motif, UBM, TLS, PROTEIN BINDING-SIGNALING PROTEIN complex
A
PHE
681
A
PHE
14
1
A
PRO
682
A
PRO
15
-7.08
A
PHE
681
A
PHE
14
2
A
PRO
682
A
PRO
15
-7.48
A
PHE
681
A
PHE
14
3
A
PRO
682
A
PRO
15
-8.56
A
PHE
681
A
PHE
14
4
A
PRO
682
A
PRO
15
-8.39
A
PHE
681
A
PHE
14
5
A
PRO
682
A
PRO
15
-7.25
A
PHE
681
A
PHE
14
6
A
PRO
682
A
PRO
15
-6.41
A
PHE
681
A
PHE
14
7
A
PRO
682
A
PRO
15
-7.60
A
PHE
681
A
PHE
14
8
A
PRO
682
A
PRO
15
-6.41
A
PHE
681
A
PHE
14
9
A
PRO
682
A
PRO
15
-8.37
A
PHE
681
A
PHE
14
10
A
PRO
682
A
PRO
15
-8.08
A
PHE
681
A
PHE
14
11
A
PRO
682
A
PRO
15
-6.64
A
PHE
681
A
PHE
14
12
A
PRO
682
A
PRO
15
-10.46
A
PHE
681
A
PHE
14
13
A
PRO
682
A
PRO
15
-7.50
A
PHE
681
A
PHE
14
14
A
PRO
682
A
PRO
15
-7.27
A
PHE
681
A
PHE
14
15
A
PRO
682
A
PRO
15
-7.46
A
PHE
681
A
PHE
14
16
A
PRO
682
A
PRO
15
-6.65
A
PHE
681
A
PHE
14
17
A
PRO
682
A
PRO
15
-6.80
A
PHE
681
A
PHE
14
18
A
PRO
682
A
PRO
15
-8.02
A
PHE
681
A
PHE
14
19
A
PRO
682
A
PRO
15
-7.46
A
PHE
681
A
PHE
14
20
A
PRO
682
A
PRO
15
-5.81
POLI_MOUSE
UNP
1
673
Q6R3M4
DSAEEKLPFPPDIDPQVFYELPEEVQKELMAEWERAGAARPSAHR
UBIQ_HUMAN
UNP
2
1
P62988
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
673
717
2KWU
673
717
Q6R3M4
A
1
6
50
1
76
2KWU
1
76
P62988
B
2
1
76
1
EXPRESSION TAG
GLY
668
2KWU
A
Q6R3M4
UNP
1
1
EXPRESSION TAG
SER
669
2KWU
A
Q6R3M4
UNP
2
1
EXPRESSION TAG
PRO
670
2KWU
A
Q6R3M4
UNP
3
1
EXPRESSION TAG
GLU
671
2KWU
A
Q6R3M4
UNP
4
1
EXPRESSION TAG
PHE
672
2KWU
A
Q6R3M4
UNP
5
5
anti-parallel
parallel
anti-parallel
anti-parallel
B
THR
12
B
THR
12
B
GLU
16
B
GLU
16
B
GLN
2
B
GLN
2
B
LYS
6
B
LYS
6
B
THR
66
B
THR
66
B
LEU
71
B
LEU
71
B
GLN
41
B
GLN
41
B
PHE
45
B
PHE
45
B
LYS
48
B
LYS
48
B
GLN
49
B
GLN
49
1
P 1