1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Rasia, R.M. Mateos, J.L. Bologna, N.G. Burdisso, P. Imbert, L. Palatnik, J.F. Boisbouvier, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N C N 329 N O N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 N C N 347 N C N 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub N 320 N sing Y 321 N doub N 322 N sing Y 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing US Biochemistry BICHAW 0033 0006-2960 49 8237 8239 10.1021/bi100672x 20735118 Structure and RNA Interactions of the Plant MicroRNA Processing-Associated Protein HYL1. 2010 10.2210/pdb2l2m/pdb pdb_00002l2m 8474.767 Hyponastic leave 1 unp residues 97-170 1 man polymer no no GHMHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS GHMHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse-ear cress,thale-cress sample At1g09700, F21M12.9 3702 Arabidopsis thaliana 562 Escherichia coli plasmid pET-TEV chem_comp_atom chem_comp_bond database_2 pdbx_nmr_spectrometer struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references 1 0 2010-09-29 1 1 2011-07-13 1 2 2024-05-01 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details BMRB Y RCSB 2010-08-22 REL REL target function 1000 10 2D 1H-15N HSQC 3D HNCO 3D HNCA 3D HNCACB 3D HN(CO)CA 3D HN(COCA)CB 3D HN(CA)CO 3D HNCO JCACO 3D HNCO JNH 3D HNCOCA JCAHA 3D HNCO JCACO 3D HNCO JNH 3D HNCOCA JCAHA 0.8 mM [U-100% 13C; U-100% 15N] 10 mM 100 mM 50 mM 0.05 % 0.8 mM [U-100% 13C; U-100% 15N] 10 mM 100 mM 50 mM 0.05 % 5 % 0.2 % 7.0 1 atm 298 K rosetta full atom relaxation 1 closest to the average 0.8 mM [U-100% 13C; U-100% 15N] hyl1-2, 10 mM DTT, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 90% H2O/10% D2O 90% H2O/10% D2O 0.8 mM [U-100% 13C; U-100% 15N] hyl1-2, 10 mM DTT, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 5 % C12E5, 0.2 % Hexanol, 90% H2O/10% D2O 90% H2O/10% D2O Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax data analysis NMRPipe Johnson, One Moon Scientific data analysis NMRView 600 Varian Direct Drive Varian DirectDrive n 1 94 A n 2 95 A n 3 96 A n 4 97 A n 5 98 A n 6 99 A n 7 100 A LEU 101 n 8 LEU 101 A CYS 102 n 9 CYS 102 A LYS 103 n 10 LYS 103 A ASN 104 n 11 ASN 104 A LEU 105 n 12 LEU 105 A LEU 106 n 13 LEU 106 A GLN 107 n 14 GLN 107 A GLU 108 n 15 GLU 108 A TYR 109 n 16 TYR 109 A ALA 110 n 17 ALA 110 A GLN 111 n 18 GLN 111 A LYS 112 n 19 LYS 112 A MET 113 n 20 MET 113 A ASN 114 n 21 ASN 114 A TYR 115 n 22 TYR 115 A ALA 116 n 23 ALA 116 A ILE 117 n 24 ILE 117 A PRO 118 n 25 PRO 118 A LEU 119 n 26 LEU 119 A TYR 120 n 27 TYR 120 A GLN 121 n 28 GLN 121 A CYS 122 n 29 CYS 122 A GLN 123 n 30 GLN 123 A LYS 124 n 31 LYS 124 A VAL 125 n 32 VAL 125 A GLU 126 n 33 GLU 126 A THR 127 n 34 THR 127 A LEU 128 n 35 LEU 128 A GLY 129 n 36 GLY 129 A ARG 130 n 37 ARG 130 A VAL 131 n 38 VAL 131 A THR 132 n 39 THR 132 A GLN 133 n 40 GLN 133 A PHE 134 n 41 PHE 134 A THR 135 n 42 THR 135 A CYS 136 n 43 CYS 136 A THR 137 n 44 THR 137 A VAL 138 n 45 VAL 138 A GLU 139 n 46 GLU 139 A ILE 140 n 47 ILE 140 A GLY 141 n 48 GLY 141 A GLY 142 n 49 GLY 142 A ILE 143 n 50 ILE 143 A LYS 144 n 51 LYS 144 A TYR 145 n 52 TYR 145 A THR 146 n 53 THR 146 A GLY 147 n 54 GLY 147 A ALA 148 n 55 ALA 148 A ALA 149 n 56 ALA 149 A THR 150 n 57 THR 150 A ARG 151 n 58 ARG 151 A THR 152 n 59 THR 152 A LYS 153 n 60 LYS 153 A LYS 154 n 61 LYS 154 A ASP 155 n 62 ASP 155 A ALA 156 n 63 ALA 156 A GLU 157 n 64 GLU 157 A ILE 158 n 65 ILE 158 A SER 159 n 66 SER 159 A ALA 160 n 67 ALA 160 A GLY 161 n 68 GLY 161 A ARG 162 n 69 ARG 162 A THR 163 n 70 THR 163 A ALA 164 n 71 ALA 164 A LEU 165 n 72 LEU 165 A LEU 166 n 73 LEU 166 A ALA 167 n 74 ALA 167 A ILE 168 n 75 ILE 168 A GLN 169 n 76 GLN 169 A SER 170 n 77 SER 170 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 125 A N VAL 32 A O GLN 133 A O GLN 40 A N ILE 140 A N ILE 47 A O ILE 143 A O ILE 50 1 A GLY 94 A GLY 1 1 Y 1 A HIS 95 A HIS 2 1 Y 1 A MET 96 A MET 3 1 Y 1 A HIS 97 A HIS 4 1 Y 1 A GLU 98 A GLU 5 1 Y 1 A THR 99 A THR 6 1 Y 1 A GLY 100 A GLY 7 1 Y 2 A GLY 94 A GLY 1 1 Y 2 A HIS 95 A HIS 2 1 Y 2 A MET 96 A MET 3 1 Y 2 A HIS 97 A HIS 4 1 Y 2 A GLU 98 A GLU 5 1 Y 2 A THR 99 A THR 6 1 Y 2 A GLY 100 A GLY 7 1 Y 3 A GLY 94 A GLY 1 1 Y 3 A HIS 95 A HIS 2 1 Y 3 A MET 96 A MET 3 1 Y 3 A HIS 97 A HIS 4 1 Y 3 A GLU 98 A GLU 5 1 Y 3 A THR 99 A THR 6 1 Y 3 A GLY 100 A GLY 7 1 Y 4 A GLY 94 A GLY 1 1 Y 4 A HIS 95 A HIS 2 1 Y 4 A MET 96 A MET 3 1 Y 4 A HIS 97 A HIS 4 1 Y 4 A GLU 98 A GLU 5 1 Y 4 A THR 99 A THR 6 1 Y 4 A GLY 100 A GLY 7 1 Y 5 A GLY 94 A GLY 1 1 Y 5 A HIS 95 A HIS 2 1 Y 5 A MET 96 A MET 3 1 Y 5 A HIS 97 A HIS 4 1 Y 5 A GLU 98 A GLU 5 1 Y 5 A THR 99 A THR 6 1 Y 5 A GLY 100 A GLY 7 1 Y 6 A GLY 94 A GLY 1 1 Y 6 A HIS 95 A HIS 2 1 Y 6 A MET 96 A MET 3 1 Y 6 A HIS 97 A HIS 4 1 Y 6 A GLU 98 A GLU 5 1 Y 6 A THR 99 A THR 6 1 Y 6 A GLY 100 A GLY 7 1 Y 7 A GLY 94 A GLY 1 1 Y 7 A HIS 95 A HIS 2 1 Y 7 A MET 96 A MET 3 1 Y 7 A HIS 97 A HIS 4 1 Y 7 A GLU 98 A GLU 5 1 Y 7 A THR 99 A THR 6 1 Y 7 A GLY 100 A GLY 7 1 Y 8 A GLY 94 A GLY 1 1 Y 8 A HIS 95 A HIS 2 1 Y 8 A MET 96 A MET 3 1 Y 8 A HIS 97 A HIS 4 1 Y 8 A GLU 98 A GLU 5 1 Y 8 A THR 99 A THR 6 1 Y 8 A GLY 100 A GLY 7 1 Y 9 A GLY 94 A GLY 1 1 Y 9 A HIS 95 A HIS 2 1 Y 9 A MET 96 A MET 3 1 Y 9 A HIS 97 A HIS 4 1 Y 9 A GLU 98 A GLU 5 1 Y 9 A THR 99 A THR 6 1 Y 9 A GLY 100 A GLY 7 1 Y 10 A GLY 94 A GLY 1 1 Y 10 A HIS 95 A HIS 2 1 Y 10 A MET 96 A MET 3 1 Y 10 A HIS 97 A HIS 4 1 Y 10 A GLU 98 A GLU 5 1 Y 10 A THR 99 A THR 6 1 Y 10 A GLY 100 A GLY 7 1 Y 4 A ALA 116 -49.14 159.72 closest to the average, model 1 Solution structure of the second dsRBD of HYL1 1 N N A LEU 101 A LEU 8 HELX_P A MET 113 A MET 20 1 1 13 A THR 152 A THR 59 HELX_P A SER 170 A SER 77 1 2 19 RNA BINDING PROTEIN, PLANT PROTEIN miRNA, dsRBD, RNA BINDING PROTEIN, PLANT PROTEIN O04492_ARATH UNP 1 97 O04492 HETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 97 170 2L2M 97 170 O04492 A 1 4 77 1 expression tag GLY 94 2L2M A O04492 UNP 1 1 expression tag HIS 95 2L2M A O04492 UNP 2 1 expression tag MET 96 2L2M A O04492 UNP 3 3 anti-parallel anti-parallel A LEU 119 A LEU 26 A GLU 126 A GLU 33 A THR 132 A THR 39 A ILE 140 A ILE 47 A ILE 143 A ILE 50 A THR 146 A THR 53