1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Liu, C.
Lo, K.
Zhu, G.
Sze, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
The chemical shift assignment of the SWIRM domain of LSD1
11765.438
Lysine-specific histone demethylase 1A
SWIRM domain
1
man
polymer
no
no
GSVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHR
VHSYLERHGLINFGIYKRIKPL
GSVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHR
VHSYLERHGLINFGIYKRIKPL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
9606
Homo sapiens
562
Escherichia coli
BL21(DE3)
pGex-4T
vector
repository
Initial release
1
0
2011-09-21
BMRB
Y
PDBJ
2010-09-13
REL
REL
structures with the least restraint violations
100
20
1
2D 1H-15N HSQC
2D 1H-13C HSQC
3D HNCO
3D HNCACB
3D CBCA(CO)NH
3D HBHA(CO)NH
3D H(CCO)NH
3D C(CO)NH
3D HCCH-TOCSY
3D HCCH-COSY
3D 1H-15N NOESY
3D 1H-13C NOESY
0.8
mM
[U-100% 13C; U-100% 15N]
50
mM
50
mM
2
mM
1
mM
0.8
mM
50
mM
50
mM
2
mM
1
mM
50
6.5
ambient
298
K
Amber
molecular dynamics
1
lowest energy
0.8mM [U-100% 13C; U-100% 15N] SWIRM-1, 50mM sodium phosphate-2, 50mM sodium chloride-3, 2mM DTT-4, 1mM EDTA-5, 90% H2O/10% D2O
90% H2O/10% D2O
0.8mM SWIRM-6, 50mM sodium phosphate-7, 50mM sodium chloride-8, 2mM DTT-9, 1mM EDTA-10, 100% D2O
100% D2O
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Goddard
data analysis
SPARKY
Goddard
peak picking
SPARKY
Guntert, Mumenthaler and Wuthrich
structure solution
CYANA
refinement
AMBER
500
Varian
INOVA
Varian INOVA
750
Varian
INOVA
Varian INOVA
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
VAL
3
n
3
VAL
3
A
GLU
4
n
4
GLU
4
A
GLY
5
n
5
GLY
5
A
ALA
6
n
6
ALA
6
A
ALA
7
n
7
ALA
7
A
PHE
8
n
8
PHE
8
A
GLN
9
n
9
GLN
9
A
SER
10
n
10
SER
10
A
ARG
11
n
11
ARG
11
A
LEU
12
n
12
LEU
12
A
PRO
13
n
13
PRO
13
A
HIS
14
n
14
HIS
14
A
ASP
15
n
15
ASP
15
A
ARG
16
n
16
ARG
16
A
MET
17
n
17
MET
17
A
THR
18
n
18
THR
18
A
SER
19
n
19
SER
19
A
GLN
20
n
20
GLN
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
ALA
23
n
23
ALA
23
A
CYS
24
n
24
CYS
24
A
PHE
25
n
25
PHE
25
A
PRO
26
n
26
PRO
26
A
ASP
27
n
27
ASP
27
A
ILE
28
n
28
ILE
28
A
ILE
29
n
29
ILE
29
A
SER
30
n
30
SER
30
A
GLY
31
n
31
GLY
31
A
PRO
32
n
32
PRO
32
A
GLN
33
n
33
GLN
33
A
GLN
34
n
34
GLN
34
A
THR
35
n
35
THR
35
A
GLN
36
n
36
GLN
36
A
LYS
37
n
37
LYS
37
A
VAL
38
n
38
VAL
38
A
PHE
39
n
39
PHE
39
A
LEU
40
n
40
LEU
40
A
PHE
41
n
41
PHE
41
A
ILE
42
n
42
ILE
42
A
ARG
43
n
43
ARG
43
A
ASN
44
n
44
ASN
44
A
ARG
45
n
45
ARG
45
A
THR
46
n
46
THR
46
A
LEU
47
n
47
LEU
47
A
GLN
48
n
48
GLN
48
A
LEU
49
n
49
LEU
49
A
TRP
50
n
50
TRP
50
A
LEU
51
n
51
LEU
51
A
ASP
52
n
52
ASP
52
A
ASN
53
n
53
ASN
53
A
PRO
54
n
54
PRO
54
A
LYS
55
n
55
LYS
55
A
ILE
56
n
56
ILE
56
A
GLN
57
n
57
GLN
57
A
LEU
58
n
58
LEU
58
A
THR
59
n
59
THR
59
A
PHE
60
n
60
PHE
60
A
GLU
61
n
61
GLU
61
A
ALA
62
n
62
ALA
62
A
THR
63
n
63
THR
63
A
LEU
64
n
64
LEU
64
A
GLN
65
n
65
GLN
65
A
GLN
66
n
66
GLN
66
A
LEU
67
n
67
LEU
67
A
GLU
68
n
68
GLU
68
A
ALA
69
n
69
ALA
69
A
PRO
70
n
70
PRO
70
A
TYR
71
n
71
TYR
71
A
ASN
72
n
72
ASN
72
A
SER
73
n
73
SER
73
A
ASP
74
n
74
ASP
74
A
THR
75
n
75
THR
75
A
VAL
76
n
76
VAL
76
A
LEU
77
n
77
LEU
77
A
VAL
78
n
78
VAL
78
A
HIS
79
n
79
HIS
79
A
ARG
80
n
80
ARG
80
A
VAL
81
n
81
VAL
81
A
HIS
82
n
82
HIS
82
A
SER
83
n
83
SER
83
A
TYR
84
n
84
TYR
84
A
LEU
85
n
85
LEU
85
A
GLU
86
n
86
GLU
86
A
ARG
87
n
87
ARG
87
A
HIS
88
n
88
HIS
88
A
GLY
89
n
89
GLY
89
A
LEU
90
n
90
LEU
90
A
ILE
91
n
91
ILE
91
A
ASN
92
n
92
ASN
92
A
PHE
93
n
93
PHE
93
A
GLY
94
n
94
GLY
94
A
ILE
95
n
95
ILE
95
A
TYR
96
n
96
TYR
96
A
LYS
97
n
97
LYS
97
A
ARG
98
n
98
ARG
98
A
ILE
99
n
99
ILE
99
A
LYS
100
n
100
LYS
100
A
PRO
101
n
101
PRO
101
A
LEU
102
n
102
LEU
102
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
4
3.14
0.50
120.30
123.44
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
43
43
43
N
1
A
ASN
53
56.59
75.84
1
A
LYS
55
-161.81
-87.31
1
A
ILE
56
-125.24
-57.12
1
A
GLU
68
-109.31
63.76
1
A
TYR
96
-58.19
98.02
2
A
LYS
55
-71.27
-73.99
2
A
GLU
68
-108.44
74.90
3
A
ASP
15
58.47
19.14
3
A
GLU
68
-103.99
57.74
4
A
ALA
6
-74.81
44.46
4
A
GLN
57
-69.31
91.10
4
A
PHE
93
-110.66
66.67
4
A
TYR
96
52.25
9.35
5
A
ALA
6
53.46
11.05
5
A
GLN
9
-65.83
-76.44
5
A
ASP
15
-144.01
14.61
5
A
GLU
68
-73.20
48.79
5
A
HIS
88
-58.84
-7.77
5
A
ILE
99
-133.99
-39.85
6
A
ALA
6
-114.80
-79.30
6
A
ASP
52
-69.79
0.23
6
A
ASN
53
61.60
89.59
6
A
ASN
92
36.47
67.18
7
A
TYR
96
-109.11
75.03
7
A
LYS
100
46.55
75.58
8
A
LEU
90
56.84
18.43
9
A
ASN
53
-140.68
59.48
9
A
GLU
68
-69.90
66.11
9
A
ASP
74
-69.69
94.74
9
A
LEU
90
-72.13
47.14
9
A
ILE
91
44.52
29.62
10
A
ARG
11
-122.33
-71.91
10
A
LEU
12
63.01
158.37
10
A
LEU
58
-64.29
96.55
10
A
GLU
68
-103.89
53.69
10
A
ILE
99
-122.56
-73.14
10
A
LYS
100
-157.02
-57.15
11
A
VAL
3
-103.51
63.55
11
A
SER
10
-67.75
95.87
11
A
LEU
12
64.28
162.45
11
A
ASN
53
-119.47
77.36
11
A
LYS
55
-77.99
-75.71
11
A
GLU
68
-101.08
60.80
11
A
ILE
91
-46.93
103.26
12
A
ALA
6
-71.52
44.62
12
A
HIS
14
59.12
78.28
12
A
PHE
25
-119.61
67.98
12
A
GLU
68
-113.95
65.44
13
A
ASN
53
-119.16
72.05
14
A
PHE
8
-135.72
-72.78
14
A
HIS
14
-62.95
-78.51
15
A
ASN
92
-69.65
5.62
16
A
ALA
6
-69.02
80.57
16
A
LYS
55
-73.91
-70.32
16
A
LEU
58
-66.41
94.92
16
A
HIS
88
-96.41
-65.51
16
A
ASN
92
-129.54
-87.10
16
A
ILE
99
-104.97
-82.42
17
A
ALA
7
57.45
15.46
17
A
LEU
58
-68.04
84.39
17
A
GLU
68
-73.93
44.83
17
A
ILE
99
-116.23
-73.72
18
A
ASP
15
49.25
25.21
18
A
LEU
90
-81.48
43.38
18
A
ILE
99
-108.04
-66.56
19
A
ASP
15
-145.01
-48.86
19
A
LEU
58
-67.70
99.72
19
A
ILE
91
-96.51
-61.17
20
A
PHE
8
54.78
-7.47
20
A
ASN
53
-140.72
58.85
20
A
GLU
68
-113.66
66.02
20
A
LYS
97
-97.43
36.06
Lysine-specific histone demethylase 1A
lowest energy, model 1
The solution structure of the short form SWIRM domain of LSD1
1
N
N
A
THR
18
A
THR
18
HELX_P
A
ALA
23
A
ALA
23
1
1
6
A
PHE
25
A
PHE
25
HELX_P
A
SER
30
A
SER
30
1
2
6
A
PRO
32
A
PRO
32
HELX_P
A
ASP
52
A
ASP
52
1
3
21
A
THR
59
A
THR
59
HELX_P
A
LEU
67
A
LEU
67
1
4
9
A
ALA
69
A
ALA
69
HELX_P
A
SER
73
A
SER
73
5
5
5
A
ASP
74
A
ASP
74
HELX_P
A
GLY
89
A
GLY
89
1
6
16
TRANSCRIPTION
LSD1, SWIRM, Transcription
KDM1A_HUMAN
UNP
1
174
O60341
VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVH
SYLERHGLINFGIYKRIKPL
174
273
2L3D
3
102
O60341
A
1
3
102
1
EXPRESSION TAG
GLY
1
2L3D
A
O60341
UNP
1
1
EXPRESSION TAG
SER
2
2L3D
A
O60341
UNP
2