1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Liu, C. Lo, K. Zhu, G. Sze, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 The chemical shift assignment of the SWIRM domain of LSD1 11765.438 Lysine-specific histone demethylase 1A SWIRM domain 1 man polymer no no GSVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHR VHSYLERHGLINFGIYKRIKPL GSVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHR VHSYLERHGLINFGIYKRIKPL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample 9606 Homo sapiens 562 Escherichia coli BL21(DE3) pGex-4T vector repository Initial release 1 0 2011-09-21 BMRB Y PDBJ 2010-09-13 REL REL structures with the least restraint violations 100 20 1 2D 1H-15N HSQC 2D 1H-13C HSQC 3D HNCO 3D HNCACB 3D CBCA(CO)NH 3D HBHA(CO)NH 3D H(CCO)NH 3D C(CO)NH 3D HCCH-TOCSY 3D HCCH-COSY 3D 1H-15N NOESY 3D 1H-13C NOESY 0.8 mM [U-100% 13C; U-100% 15N] 50 mM 50 mM 2 mM 1 mM 0.8 mM 50 mM 50 mM 2 mM 1 mM 50 6.5 ambient 298 K Amber molecular dynamics 1 lowest energy 0.8mM [U-100% 13C; U-100% 15N] SWIRM-1, 50mM sodium phosphate-2, 50mM sodium chloride-3, 2mM DTT-4, 1mM EDTA-5, 90% H2O/10% D2O 90% H2O/10% D2O 0.8mM SWIRM-6, 50mM sodium phosphate-7, 50mM sodium chloride-8, 2mM DTT-9, 1mM EDTA-10, 100% D2O 100% D2O Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Goddard data analysis SPARKY Goddard peak picking SPARKY Guntert, Mumenthaler and Wuthrich structure solution CYANA refinement AMBER 500 Varian INOVA Varian INOVA 750 Varian INOVA Varian INOVA GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A VAL 3 n 3 VAL 3 A GLU 4 n 4 GLU 4 A GLY 5 n 5 GLY 5 A ALA 6 n 6 ALA 6 A ALA 7 n 7 ALA 7 A PHE 8 n 8 PHE 8 A GLN 9 n 9 GLN 9 A SER 10 n 10 SER 10 A ARG 11 n 11 ARG 11 A LEU 12 n 12 LEU 12 A PRO 13 n 13 PRO 13 A HIS 14 n 14 HIS 14 A ASP 15 n 15 ASP 15 A ARG 16 n 16 ARG 16 A MET 17 n 17 MET 17 A THR 18 n 18 THR 18 A SER 19 n 19 SER 19 A GLN 20 n 20 GLN 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A ALA 23 n 23 ALA 23 A CYS 24 n 24 CYS 24 A PHE 25 n 25 PHE 25 A PRO 26 n 26 PRO 26 A ASP 27 n 27 ASP 27 A ILE 28 n 28 ILE 28 A ILE 29 n 29 ILE 29 A SER 30 n 30 SER 30 A GLY 31 n 31 GLY 31 A PRO 32 n 32 PRO 32 A GLN 33 n 33 GLN 33 A GLN 34 n 34 GLN 34 A THR 35 n 35 THR 35 A GLN 36 n 36 GLN 36 A LYS 37 n 37 LYS 37 A VAL 38 n 38 VAL 38 A PHE 39 n 39 PHE 39 A LEU 40 n 40 LEU 40 A PHE 41 n 41 PHE 41 A ILE 42 n 42 ILE 42 A ARG 43 n 43 ARG 43 A ASN 44 n 44 ASN 44 A ARG 45 n 45 ARG 45 A THR 46 n 46 THR 46 A LEU 47 n 47 LEU 47 A GLN 48 n 48 GLN 48 A LEU 49 n 49 LEU 49 A TRP 50 n 50 TRP 50 A LEU 51 n 51 LEU 51 A ASP 52 n 52 ASP 52 A ASN 53 n 53 ASN 53 A PRO 54 n 54 PRO 54 A LYS 55 n 55 LYS 55 A ILE 56 n 56 ILE 56 A GLN 57 n 57 GLN 57 A LEU 58 n 58 LEU 58 A THR 59 n 59 THR 59 A PHE 60 n 60 PHE 60 A GLU 61 n 61 GLU 61 A ALA 62 n 62 ALA 62 A THR 63 n 63 THR 63 A LEU 64 n 64 LEU 64 A GLN 65 n 65 GLN 65 A GLN 66 n 66 GLN 66 A LEU 67 n 67 LEU 67 A GLU 68 n 68 GLU 68 A ALA 69 n 69 ALA 69 A PRO 70 n 70 PRO 70 A TYR 71 n 71 TYR 71 A ASN 72 n 72 ASN 72 A SER 73 n 73 SER 73 A ASP 74 n 74 ASP 74 A THR 75 n 75 THR 75 A VAL 76 n 76 VAL 76 A LEU 77 n 77 LEU 77 A VAL 78 n 78 VAL 78 A HIS 79 n 79 HIS 79 A ARG 80 n 80 ARG 80 A VAL 81 n 81 VAL 81 A HIS 82 n 82 HIS 82 A SER 83 n 83 SER 83 A TYR 84 n 84 TYR 84 A LEU 85 n 85 LEU 85 A GLU 86 n 86 GLU 86 A ARG 87 n 87 ARG 87 A HIS 88 n 88 HIS 88 A GLY 89 n 89 GLY 89 A LEU 90 n 90 LEU 90 A ILE 91 n 91 ILE 91 A ASN 92 n 92 ASN 92 A PHE 93 n 93 PHE 93 A GLY 94 n 94 GLY 94 A ILE 95 n 95 ILE 95 A TYR 96 n 96 TYR 96 A LYS 97 n 97 LYS 97 A ARG 98 n 98 ARG 98 A ILE 99 n 99 ILE 99 A LYS 100 n 100 LYS 100 A PRO 101 n 101 PRO 101 A LEU 102 n 102 LEU 102 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 4 3.14 0.50 120.30 123.44 A A A NE CZ NH1 ARG ARG ARG 43 43 43 N 1 A ASN 53 56.59 75.84 1 A LYS 55 -161.81 -87.31 1 A ILE 56 -125.24 -57.12 1 A GLU 68 -109.31 63.76 1 A TYR 96 -58.19 98.02 2 A LYS 55 -71.27 -73.99 2 A GLU 68 -108.44 74.90 3 A ASP 15 58.47 19.14 3 A GLU 68 -103.99 57.74 4 A ALA 6 -74.81 44.46 4 A GLN 57 -69.31 91.10 4 A PHE 93 -110.66 66.67 4 A TYR 96 52.25 9.35 5 A ALA 6 53.46 11.05 5 A GLN 9 -65.83 -76.44 5 A ASP 15 -144.01 14.61 5 A GLU 68 -73.20 48.79 5 A HIS 88 -58.84 -7.77 5 A ILE 99 -133.99 -39.85 6 A ALA 6 -114.80 -79.30 6 A ASP 52 -69.79 0.23 6 A ASN 53 61.60 89.59 6 A ASN 92 36.47 67.18 7 A TYR 96 -109.11 75.03 7 A LYS 100 46.55 75.58 8 A LEU 90 56.84 18.43 9 A ASN 53 -140.68 59.48 9 A GLU 68 -69.90 66.11 9 A ASP 74 -69.69 94.74 9 A LEU 90 -72.13 47.14 9 A ILE 91 44.52 29.62 10 A ARG 11 -122.33 -71.91 10 A LEU 12 63.01 158.37 10 A LEU 58 -64.29 96.55 10 A GLU 68 -103.89 53.69 10 A ILE 99 -122.56 -73.14 10 A LYS 100 -157.02 -57.15 11 A VAL 3 -103.51 63.55 11 A SER 10 -67.75 95.87 11 A LEU 12 64.28 162.45 11 A ASN 53 -119.47 77.36 11 A LYS 55 -77.99 -75.71 11 A GLU 68 -101.08 60.80 11 A ILE 91 -46.93 103.26 12 A ALA 6 -71.52 44.62 12 A HIS 14 59.12 78.28 12 A PHE 25 -119.61 67.98 12 A GLU 68 -113.95 65.44 13 A ASN 53 -119.16 72.05 14 A PHE 8 -135.72 -72.78 14 A HIS 14 -62.95 -78.51 15 A ASN 92 -69.65 5.62 16 A ALA 6 -69.02 80.57 16 A LYS 55 -73.91 -70.32 16 A LEU 58 -66.41 94.92 16 A HIS 88 -96.41 -65.51 16 A ASN 92 -129.54 -87.10 16 A ILE 99 -104.97 -82.42 17 A ALA 7 57.45 15.46 17 A LEU 58 -68.04 84.39 17 A GLU 68 -73.93 44.83 17 A ILE 99 -116.23 -73.72 18 A ASP 15 49.25 25.21 18 A LEU 90 -81.48 43.38 18 A ILE 99 -108.04 -66.56 19 A ASP 15 -145.01 -48.86 19 A LEU 58 -67.70 99.72 19 A ILE 91 -96.51 -61.17 20 A PHE 8 54.78 -7.47 20 A ASN 53 -140.72 58.85 20 A GLU 68 -113.66 66.02 20 A LYS 97 -97.43 36.06 Lysine-specific histone demethylase 1A lowest energy, model 1 The solution structure of the short form SWIRM domain of LSD1 1 N N A THR 18 A THR 18 HELX_P A ALA 23 A ALA 23 1 1 6 A PHE 25 A PHE 25 HELX_P A SER 30 A SER 30 1 2 6 A PRO 32 A PRO 32 HELX_P A ASP 52 A ASP 52 1 3 21 A THR 59 A THR 59 HELX_P A LEU 67 A LEU 67 1 4 9 A ALA 69 A ALA 69 HELX_P A SER 73 A SER 73 5 5 5 A ASP 74 A ASP 74 HELX_P A GLY 89 A GLY 89 1 6 16 TRANSCRIPTION LSD1, SWIRM, Transcription KDM1A_HUMAN UNP 1 174 O60341 VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVH SYLERHGLINFGIYKRIKPL 174 273 2L3D 3 102 O60341 A 1 3 102 1 EXPRESSION TAG GLY 1 2L3D A O60341 UNP 1 1 EXPRESSION TAG SER 2 2L3D A O60341 UNP 2