1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Quintal, S.M.O.
Viegas, A.J.M.
Cabrita, E.J.
Farrell, N.P.
Erhardt, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Biochemistry
BICHAW
0033
0006-2960
51
1752
1761
10.1021/bi201834g
22303928
Platinated DNA affects zinc finger conformation. Interaction of a platinated single-stranded oligonucleotide and the C-terminal zinc finger of nucleocapsid protein HIVNCp7.
2012
2230.612
C-terminal Zinc Knucle of the HIV-NCP7
1
syn
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
KGCWKCGKEGHQMKDCTER
KGCWKCGKEGHQMKDCTER
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
pdbx_database_status
pdbx_nmr_software
pdbx_nmr_spectrometer
repository
Initial release
Database references
Data collection
Other
1
0
2011-10-12
1
1
2012-06-20
1
2
2020-02-05
_pdbx_database_status.status_code_cs
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
BMRB
Y
RCSB
2010-10-01
REL
REL
REL
ZN
ZINC ION
290
196
45
49
target function
20
20
2D 1H-1H TOCSY
2D DQF-COSY
2D 1H-1H NOESY
2D 1H-15N HSQC
1
mM
6
5.7
ambient
298
K
DGSA-distance geometry simulated annealing
1
lowest energy
1 mM C-terminal zinc knuckle of the HIVNCp7, 90% H2O/10% D2O
90% H2O/10% D2O
Guntert, Mumenthaler and Wuthrich
refinement
CYANA
2.1
Goddard
peak picking
Sparky
3.114
Goddard
chemical shift assignment
Sparky
3.114
600
Bruker
AVANCE
Bruker Avance
600
Bruker
AVANCE
Bruker Avance
ZN
20
2
ZN
ZN
20
A
LYS
1
n
1
LYS
1
A
GLY
2
n
2
GLY
2
A
CYS
3
n
3
CYS
3
A
TRP
4
n
4
TRP
4
A
LYS
5
n
5
LYS
5
A
CYS
6
n
6
CYS
6
A
GLY
7
n
7
GLY
7
A
LYS
8
n
8
LYS
8
A
GLU
9
n
9
GLU
9
A
GLY
10
n
10
GLY
10
A
HIS
11
n
11
HIS
11
A
GLN
12
n
12
GLN
12
A
MET
13
n
13
MET
13
A
LYS
14
n
14
LYS
14
A
ASP
15
n
15
ASP
15
A
CYS
16
n
16
CYS
16
A
THR
17
n
17
THR
17
A
GLU
18
n
18
GLU
18
A
ARG
19
n
19
ARG
19
A
author_defined_assembly
1
monomeric
A
HIS
11
A
NE2
HIS
11
1_555
A
ZN
20
B
ZN
ZN
1_555
A
CYS
6
A
SG
CYS
6
1_555
120.7
A
HIS
11
A
NE2
HIS
11
1_555
A
ZN
20
B
ZN
ZN
1_555
A
CYS
3
A
SG
CYS
3
1_555
119.0
A
CYS
6
A
SG
CYS
6
1_555
A
ZN
20
B
ZN
ZN
1_555
A
CYS
3
A
SG
CYS
3
1_555
101.4
A
HIS
11
A
NE2
HIS
11
1_555
A
ZN
20
B
ZN
ZN
1_555
A
CYS
16
A
SG
CYS
16
1_555
110.0
A
CYS
6
A
SG
CYS
6
1_555
A
ZN
20
B
ZN
ZN
1_555
A
CYS
16
A
SG
CYS
16
1_555
104.8
A
CYS
3
A
SG
CYS
3
1_555
A
ZN
20
B
ZN
ZN
1_555
A
CYS
16
A
SG
CYS
16
1_555
97.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLU
9
51.83
88.76
1
A
THR
17
-90.10
47.02
2
A
GLU
9
51.72
88.32
2
A
THR
17
-91.22
45.00
3
A
GLU
9
51.78
88.61
3
A
THR
17
-89.51
47.84
4
A
GLU
9
51.56
88.46
5
A
CYS
3
-66.12
-167.18
5
A
GLU
9
63.65
106.90
6
A
CYS
6
-69.72
99.76
6
A
GLU
9
53.88
91.05
7
A
CYS
3
-67.92
-168.70
7
A
GLU
9
51.87
88.70
8
A
CYS
3
-69.28
-168.47
8
A
GLU
9
52.25
89.09
9
A
CYS
3
-66.55
-169.05
9
A
GLU
9
51.91
88.89
10
A
CYS
3
-75.09
-166.35
10
A
GLU
9
59.86
99.66
11
A
CYS
3
-66.13
-166.89
11
A
GLU
9
60.26
100.81
12
A
GLU
9
51.84
88.54
12
A
THR
17
-89.44
47.67
13
A
CYS
3
-65.90
-166.69
13
A
GLU
9
60.41
100.92
13
A
THR
17
-92.93
40.50
14
A
GLU
9
51.72
87.76
15
A
CYS
3
-66.52
-166.80
15
A
GLU
9
51.37
88.22
16
A
GLU
9
51.33
87.77
17
A
CYS
3
-71.03
-167.45
17
A
GLU
9
51.29
87.96
18
A
CYS
3
-78.30
-168.91
18
A
GLU
9
56.18
94.76
18
A
THR
17
-88.47
49.30
19
A
CYS
3
-66.90
-166.85
19
A
GLU
9
61.18
102.58
19
A
GLU
18
-49.67
152.28
20
A
CYS
3
-65.64
-173.44
20
A
GLU
9
61.36
100.42
C-terminal Zinc Knucle of the HIV-NCP7
C-terminal zinc knuckle of the HIVNCp7
1
N
N
2
N
N
metalc
2.052
A
HIS
11
A
NE2
HIS
11
1_555
A
ZN
20
B
ZN
ZN
1_555
metalc
2.273
A
CYS
6
A
SG
CYS
6
1_555
A
ZN
20
B
ZN
ZN
1_555
metalc
2.299
A
CYS
3
A
SG
CYS
3
1_555
A
ZN
20
B
ZN
ZN
1_555
metalc
2.367
A
CYS
16
A
SG
CYS
16
1_555
A
ZN
20
B
ZN
ZN
1_555
METAL BINDING PROTEIN
NCP7, HIV, Platinum, METAL BINDING PROTEIN
Q9YP46_9HIV1
UNP
1
411
Q9YP46
KGCWKCGKEGHQMKDCTER
411
429
2L44
1
19
Q9YP46
A
1
1
19
BINDING SITE FOR RESIDUE ZN A 20
Software
4
A
CYS
3
A
CYS
3
4
1_555
A
CYS
6
A
CYS
6
4
1_555
A
HIS
11
A
HIS
11
4
1_555
A
CYS
16
A
CYS
16
4
1_555
1
P 1