1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Barrera-Vilarmau, S. Obregon, P. de Alba, E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking US Plos One 1932-6203 6 e21413 e21413 10.1371/journal.pone.0021413 21731739 Intrinsic order and disorder in the bcl-2 member harakiri: insights into its proapoptotic activity. 2011 10.2210/pdb2l58/pdb pdb_00002l58 3726.374 Activator of apoptosis harakiri UNP residues 22-53 1 syn polymer BH3-interacting domain-containing protein 3, Neuronal death protein DP5 no yes RLGLRSSAAQLTAARLKALGDELHQRTMWRRR(NH2) RLGLRSSAAQLTAARLKALGDELHQRTMWRRRX A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_entity_src_syn pdbx_nmr_exptl pdbx_nmr_exptl_sample pdbx_nmr_refine pdbx_nmr_sample_details pdbx_nmr_software pdbx_nmr_spectrometer struct_conn struct_ref_seq_dif repository Initial release Data collection Database references Derived calculations Experimental preparation Refinement description Source and taxonomy 1 0 2011-09-14 1 1 2021-08-18 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.organism_scientific _pdbx_nmr_refine.software_ordinal _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.type _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details BMRB Y RCSB 2010-10-28 REL REL chemically synthesized 32630 synthetic construct sample structures with the lowest energy 200 20 2D 1H-15N SOFAST HMQC 2D 1H-1H TOCSY 2D 1H-1H NOESY 2D 1H-13C HSQC 3D [1H-1H]-TOCSY-[1H-13C]-HSQC 2D 1H-15N SOFAST HMQC 2D 1H-1H TOCSY 2D 1H-1H NOESY 2D 1H-13C HSQC 3D [1H-1H]-TOCSY-[1H-13C]-HSQC 1.0-1.5 mM natural abundance 0.1 mM natural abundance 20 mM natural abundance 35 v/v d3 1.0-1.5 mM natural abundance 0.1 mM natural abundance 20 mM natural abundance 35 v/v d2 0.1 5.8 ambient 303 K DGSA-distance geometry simulated annealing 1 lowest energy 1.0-1.5 mM Hrk-22_53, 0.1 mM sodium azide, 20 mM sodium phosphate, 35% v/v d3 TFE, 100% D2O sample_1 100% D2O solution 1.0-1.5 mM Hrk-22_53, 0.1 mM sodium azide, 20 mM sodium phosphate, 35% v/v d2 TFE, 95% H2O/5% D2O sample_2 95% H2O/5% D2O solution Bruker Biospin collection TopSpin Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Goddard data analysis Sparky Garrett data analysis PIPP Cornilescu, Delaglio and Bax data analysis TALOS Schwieters, Kuszewski, Tjandra and Clore structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH 600 Bruker AVANCE Bruker Avance ARG 1 n 1 ARG 1 A LEU 2 n 2 LEU 2 A GLY 3 n 3 GLY 3 A LEU 4 n 4 LEU 4 A ARG 5 n 5 ARG 5 A SER 6 n 6 SER 6 A SER 7 n 7 SER 7 A ALA 8 n 8 ALA 8 A ALA 9 n 9 ALA 9 A GLN 10 n 10 GLN 10 A LEU 11 n 11 LEU 11 A THR 12 n 12 THR 12 A ALA 13 n 13 ALA 13 A ALA 14 n 14 ALA 14 A ARG 15 n 15 ARG 15 A LEU 16 n 16 LEU 16 A LYS 17 n 17 LYS 17 A ALA 18 n 18 ALA 18 A LEU 19 n 19 LEU 19 A GLY 20 n 20 GLY 20 A ASP 21 n 21 ASP 21 A GLU 22 n 22 GLU 22 A LEU 23 n 23 LEU 23 A HIS 24 n 24 HIS 24 A GLN 25 n 25 GLN 25 A ARG 26 n 26 ARG 26 A THR 27 n 27 THR 27 A MET 28 n 28 MET 28 A TRP 29 n 29 TRP 29 A ARG 30 n 30 ARG 30 A ARG 31 n 31 ARG 31 A ARG 32 n 32 ARG 32 A NH2 33 n 33 NH2 33 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 4 A A O H SER ALA 6 8 1.59 7 A A H3 HH21 ARG ARG 1 5 1.32 11 A A O HG1 ALA THR 8 12 1.50 16 A A O H ALA THR 8 12 1.57 18 A A O H THR ARG 27 31 1.58 18 A A O H LEU SER 4 6 1.60 1 A LEU 2 59.46 -79.73 1 A LEU 4 -64.46 79.01 1 A SER 6 53.02 -87.18 1 A SER 7 -56.92 -9.71 2 A LEU 4 56.27 72.58 2 A ARG 5 -169.04 -23.61 3 A SER 6 -77.66 -82.73 4 A LEU 2 -63.92 -173.44 4 A ARG 5 52.97 -174.93 4 A SER 6 58.43 111.99 4 A SER 7 68.46 -48.56 5 A LEU 2 -166.85 98.74 5 A LEU 4 56.38 174.24 5 A ARG 5 -170.67 33.04 5 A SER 6 -171.55 -54.51 6 A LEU 2 -170.19 127.13 6 A LEU 4 52.95 16.79 6 A ARG 5 -68.10 67.88 6 A SER 6 -171.71 -36.45 7 A LEU 2 -167.13 110.66 7 A LEU 4 -69.62 60.64 7 A ARG 5 -65.82 -141.41 7 A SER 6 55.70 171.02 7 A SER 7 52.09 -88.86 8 A LEU 2 -165.95 16.87 8 A LEU 4 68.08 -59.65 8 A ARG 5 51.82 179.75 8 A SER 6 -170.77 -78.09 9 A LEU 2 -62.53 -73.49 9 A ARG 5 -168.97 -21.52 9 A ARG 31 -164.75 -36.29 10 A LEU 2 -167.80 -154.47 10 A SER 6 -171.63 -74.95 10 A ARG 31 -78.19 45.59 11 A LEU 4 -65.76 86.17 11 A ARG 5 -65.60 95.62 11 A SER 6 -171.55 -72.42 11 A ARG 31 -164.47 47.67 12 A SER 6 -66.60 72.79 12 A SER 7 -170.20 -59.98 13 A ARG 5 52.81 15.34 13 A SER 6 -70.23 45.72 13 A SER 7 -171.60 -53.10 13 A ARG 30 -90.67 45.36 13 A ARG 31 -162.17 -21.32 14 A LEU 2 -65.25 -80.72 14 A ARG 5 -169.04 -35.33 14 A SER 6 -66.78 72.78 14 A SER 7 -171.61 -60.04 14 A ARG 30 -87.07 44.91 14 A ARG 31 -155.69 -38.01 15 A LEU 2 -65.39 78.06 15 A LEU 4 -165.72 40.77 15 A SER 6 -165.89 43.73 15 A SER 7 -171.50 -39.47 16 A LEU 4 56.23 13.73 16 A ARG 5 -147.48 -80.76 16 A SER 6 66.68 -63.07 17 A SER 6 -67.86 68.60 17 A SER 7 -169.14 -44.15 18 A ARG 5 -69.70 46.87 18 A SER 6 -165.66 -61.12 19 A LEU 2 -68.95 5.91 19 A SER 6 59.58 126.56 19 A SER 7 65.79 -58.86 19 A ARG 31 -168.63 -8.16 20 A LEU 4 -169.71 -21.26 20 A SER 7 -171.53 -51.73 lowest energy, model 1 Solution structure of the cytosolic fragment 22-53 of Bcl-2 member Harakiri 1 N N A SER 6 A SER 6 HELX_P A ARG 31 A ARG 31 1 1 26 covale 1.304 both A ARG 32 A C ARG 32 1_555 A NH2 33 A N NH2 33 1_555 APOPTOSIS Apoptosis, Bcl-2, BH3-only, Harakiri, intrinsically disordered protein HRK_HUMAN UNP 1 22 O00198 RLGLRSSAAQLTAARLKALGDELHQRTMWRRR 22 53 2L58 1 32 O00198 A 1 1 32 1 amidation NH2 33 2L58 A O00198 UNP 33