1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Vendeix, F.A.P. Murphy IV, F.V. Cantara, W. Leszczynska, G. Gustilo, E.M. Sproat, B. Malkiewicz, A.A.P. Agris, P.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C16 H23 N6 O11 P S 538.426 n 2-METHYLTHIO-N6-(AMINOCARBONYL-L-THREONYL)-ADENOSINE-5'-MONOPHOSPHATE RNA linking C12 H17 N2 O10 P S 412.310 n 5-(O-METHYLACETO)-2-THIO-2-DEOXY-URIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking To be Published 0353 Solution Structure of the human Anti-codon Stem and loop(hASL) of transfer RNA Lysine 3 (tRNALys3) 5644.539 RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3') 1 syn polymer no yes GCAGACU(70U)UU(12A)AUCUGC GCAGACUUUUAAUCUGC A polyribonucleotide n n n n n n n n n n n n n n n n n 2.207 1 19 A 27 A 43 -0.023 A_G27:C43_A 1 2.901 -0.435 -0.032 -0.030 1.416 1 19 A 28 A 42 2.078 A_C28:G42_A 2 2.099 -0.251 0.020 -0.085 -0.165 1 20 A 29 A 41 -0.636 A_A29:U41_A 3 2.273 0.211 -0.066 -0.095 -2.457 1 19 A 30 A 40 -0.919 A_G30:C40_A 4 -0.354 -0.313 0.000 -0.133 -2.405 1 20 A 31 A 39 -2.421 A_A31:U39_A 5 -0.984 0.202 0.028 0.354 -9.688 1 A 32 A 38 -17.358 A_C32:A38_A 6 8.377 3.512 -0.627 -0.379 2.559 35.487 A A 27 28 17.124 A A 43 42 3.178 10.293 0.011 -1.730 AA_G27C28:G42C43_AA 1 -1.488 2.476 33.975 -4.192 -0.214 3.082 33.127 A A 28 29 9.565 A A 42 41 3.392 5.430 -0.201 -1.662 AA_C28A29:U41G42_AA 2 0.162 -0.286 32.691 -3.826 0.379 2.807 30.907 A A 29 30 14.177 A A 41 40 3.324 7.483 0.044 -1.788 AA_A29G30:C40U41_AA 3 0.379 -0.717 30.007 -4.735 -0.012 3.064 35.288 A A 30 31 7.915 A A 40 39 3.306 4.783 -0.114 -1.590 AA_G30A31:U39C40_AA 4 0.979 -1.619 34.959 -3.316 0.329 3.094 43.384 A A 31 32 10.332 A A 39 38 3.591 7.593 -0.720 -2.227 AA_A31C32:A38U39_AA 5 3.893 -5.298 42.576 -3.774 1.364 repository Initial release Version format compliance 1 0 2011-03-02 1 1 2011-07-13 BMRB Y RCSB 2011-02-08 REL REL REL structures with the lowest energy 80 11 2D 1H-1H NOESY 2D 1H-1H TOCSY 2D 1H-1H COSY 2D DQF-COSY 2D 1H-1H NOESY 2D 1H-1H TOCSY 2D 1H-13C HSQC 2D 1H-31P HETCOR 2D 1H-1H NOESY 1.50 mM 1.50 mM unknown 6.2 ambient 275 K unknown 6.2 ambient 295 K torsion angle dynamics 1 minimized average structure 1.50 mM RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3'), 90% H2O/10% D2O 90% H2O/10% D2O 1.50 mM RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3'), 100% D2O 100% D2O Bruker Biospin collection xwinnmr Bruker Biospin processing xwinnmr Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax processing NMRPipe Goddard data analysis SPARKY Goddard chemical shift assignment SPARKY Goddard peak picking SPARKY Brunger, Adams, Clore, Gros, Nilges and Read geometry optimization CNS Brunger, Adams, Clore, Gros, Nilges and Read structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read refinement CNS 500 Bruker DRX Bruker DRX 600 Varian UNITY Varian Unity G 27 n 1 G 27 A C 28 n 2 C 28 A A 29 n 3 A 29 A G 30 n 4 G 30 A A 31 n 5 A 31 A C 32 n 6 C 32 A U 33 n 7 U 33 A 70U 34 n 8 70U 34 A U 35 n 9 U 35 A U 36 n 10 U 36 A 12A 37 n 11 12A 37 A A 38 n 12 A 38 A U 39 n 13 U 39 A C 40 n 14 C 40 A U 41 n 15 U 41 A G 42 n 16 G 42 A C 43 n 17 C 43 A author_defined_assembly 1 monomeric A 70U 34 A 70U 8 U A 12A 37 A 12A 11 A 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 2 A A H61 O4 A U 31 39 1.43 2 A A O2 H22 C G 28 42 1.46 2 A A H22 O2 G C 27 43 1.48 2 A A N1 H3 A U 29 41 1.53 2 A A H61 O4 A U 29 41 1.56 3 A A O2 H22 C G 28 42 1.40 3 A A H22 O2 G C 30 40 1.46 3 A A H22 O2 G C 27 43 1.47 3 A A H61 O4 A U 31 39 1.52 3 A A N1 H3 A U 29 41 1.59 4 A A H61 O4 A U 31 39 1.46 4 A A H22 O2 G C 30 40 1.55 5 A A H61 O4 A U 31 39 1.41 5 A A N1 H3 A U 31 39 1.55 5 A A H22 O2 G C 30 40 1.55 6 A A H61 O4 A U 31 39 1.42 6 A A N1 H3 A U 31 39 1.54 7 A A H22 O2 G C 30 40 1.41 7 A A O2 H22 C G 28 42 1.48 7 A A H61 O4 A U 31 39 1.54 7 A A N1 H3 A U 31 39 1.56 8 A A O2 H22 C G 28 42 1.39 8 A A H22 O2 G C 27 43 1.47 8 A A H22 O2 G C 30 40 1.48 8 A A H61 O4 A U 31 39 1.52 8 A A N1 H3 A U 29 41 1.58 9 A A H22 O2 G C 27 43 1.50 9 A A O2 H22 C G 28 42 1.52 9 A A H61 O4 A U 29 41 1.54 9 A A H61 O4 A U 31 39 1.58 10 A A O2 H22 C G 28 42 1.40 10 A A H22 O2 G C 27 43 1.42 10 A A H22 O2 G C 30 40 1.45 10 A A N1 H3 A U 29 41 1.60 11 A A O2 H22 C G 28 42 1.43 11 A A H22 O2 G C 27 43 1.48 11 A A H22 O2 G C 30 40 1.49 11 A A N1 H3 A U 29 41 1.53 11 A A H61 O4 A U 31 39 1.55 5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3' minimized average, model 1 minimized average Solution Structure of the human Anti-codon Stem and loop(hASL) of transfer RNA Lysine 3 (tRNALys3) 1 N N covale 1.614 A U 33 A O3' U 7 1_555 A 70U 34 A P 70U 8 1_555 covale 1.608 A 70U 34 A O3' 70U 8 1_555 A U 35 A P U 9 1_555 covale 1.610 A U 36 A O3' U 10 1_555 A 12A 37 A P 12A 11 1_555 covale 1.605 A 12A 37 A O3' 12A 11 1_555 A A 38 A P A 12 1_555 hydrog WATSON-CRICK A G 27 A N1 G 1 1_555 A C 43 A N3 C 17 1_555 hydrog WATSON-CRICK A G 27 A N2 G 1 1_555 A C 43 A O2 C 17 1_555 hydrog WATSON-CRICK A G 27 A O6 G 1 1_555 A C 43 A N4 C 17 1_555 hydrog WATSON-CRICK A C 28 A N3 C 2 1_555 A G 42 A N1 G 16 1_555 hydrog WATSON-CRICK A C 28 A N4 C 2 1_555 A G 42 A O6 G 16 1_555 hydrog WATSON-CRICK A C 28 A O2 C 2 1_555 A G 42 A N2 G 16 1_555 hydrog WATSON-CRICK A A 29 A N1 A 3 1_555 A U 41 A N3 U 15 1_555 hydrog WATSON-CRICK A A 29 A N6 A 3 1_555 A U 41 A O4 U 15 1_555 hydrog WATSON-CRICK A G 30 A N1 G 4 1_555 A C 40 A N3 C 14 1_555 hydrog WATSON-CRICK A G 30 A N2 G 4 1_555 A C 40 A O2 C 14 1_555 hydrog WATSON-CRICK A G 30 A O6 G 4 1_555 A C 40 A N4 C 14 1_555 hydrog WATSON-CRICK A A 31 A N1 A 5 1_555 A U 39 A N3 U 13 1_555 hydrog WATSON-CRICK A A 31 A N6 A 5 1_555 A U 39 A O4 U 13 1_555 hydrog C-A MISPAIR A C 32 A O2 C 6 1_555 A A 38 A N6 A 12 1_555 RNA RNA 2L9E PDB 1 2L9E 27 43 2L9E 27 43 2L9E A 1 1 17