1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Vendeix, F.A.P.
Murphy IV, F.V.
Cantara, W.
Leszczynska, G.
Gustilo, E.M.
Sproat, B.
Malkiewicz, A.A.P.
Agris, P.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C16 H23 N6 O11 P S
538.426
n
2-METHYLTHIO-N6-(AMINOCARBONYL-L-THREONYL)-ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C12 H17 N2 O10 P S
412.310
n
5-(O-METHYLACETO)-2-THIO-2-DEOXY-URIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
To be Published
0353
Solution Structure of the human Anti-codon Stem and loop(hASL) of transfer RNA Lysine 3 (tRNALys3)
5644.539
RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3')
1
syn
polymer
no
yes
GCAGACU(70U)UU(12A)AUCUGC
GCAGACUUUUAAUCUGC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
2.207
1
19
A
27
A
43
-0.023
A_G27:C43_A
1
2.901
-0.435
-0.032
-0.030
1.416
1
19
A
28
A
42
2.078
A_C28:G42_A
2
2.099
-0.251
0.020
-0.085
-0.165
1
20
A
29
A
41
-0.636
A_A29:U41_A
3
2.273
0.211
-0.066
-0.095
-2.457
1
19
A
30
A
40
-0.919
A_G30:C40_A
4
-0.354
-0.313
0.000
-0.133
-2.405
1
20
A
31
A
39
-2.421
A_A31:U39_A
5
-0.984
0.202
0.028
0.354
-9.688
1
A
32
A
38
-17.358
A_C32:A38_A
6
8.377
3.512
-0.627
-0.379
2.559
35.487
A
A
27
28
17.124
A
A
43
42
3.178
10.293
0.011
-1.730
AA_G27C28:G42C43_AA
1
-1.488
2.476
33.975
-4.192
-0.214
3.082
33.127
A
A
28
29
9.565
A
A
42
41
3.392
5.430
-0.201
-1.662
AA_C28A29:U41G42_AA
2
0.162
-0.286
32.691
-3.826
0.379
2.807
30.907
A
A
29
30
14.177
A
A
41
40
3.324
7.483
0.044
-1.788
AA_A29G30:C40U41_AA
3
0.379
-0.717
30.007
-4.735
-0.012
3.064
35.288
A
A
30
31
7.915
A
A
40
39
3.306
4.783
-0.114
-1.590
AA_G30A31:U39C40_AA
4
0.979
-1.619
34.959
-3.316
0.329
3.094
43.384
A
A
31
32
10.332
A
A
39
38
3.591
7.593
-0.720
-2.227
AA_A31C32:A38U39_AA
5
3.893
-5.298
42.576
-3.774
1.364
repository
Initial release
Version format compliance
1
0
2011-03-02
1
1
2011-07-13
BMRB
Y
RCSB
2011-02-08
REL
REL
REL
structures with the lowest energy
80
11
2D 1H-1H NOESY
2D 1H-1H TOCSY
2D 1H-1H COSY
2D DQF-COSY
2D 1H-1H NOESY
2D 1H-1H TOCSY
2D 1H-13C HSQC
2D 1H-31P HETCOR
2D 1H-1H NOESY
1.50
mM
1.50
mM
unknown
6.2
ambient
275
K
unknown
6.2
ambient
295
K
torsion angle dynamics
1
minimized average structure
1.50 mM RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3'), 90% H2O/10% D2O
90% H2O/10% D2O
1.50 mM RNA (5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3'), 100% D2O
100% D2O
Bruker Biospin
collection
xwinnmr
Bruker Biospin
processing
xwinnmr
Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
processing
NMRPipe
Goddard
data analysis
SPARKY
Goddard
chemical shift assignment
SPARKY
Goddard
peak picking
SPARKY
Brunger, Adams, Clore, Gros, Nilges and Read
geometry optimization
CNS
Brunger, Adams, Clore, Gros, Nilges and Read
structure solution
CNS
Brunger, Adams, Clore, Gros, Nilges and Read
refinement
CNS
500
Bruker
DRX
Bruker DRX
600
Varian
UNITY
Varian Unity
G
27
n
1
G
27
A
C
28
n
2
C
28
A
A
29
n
3
A
29
A
G
30
n
4
G
30
A
A
31
n
5
A
31
A
C
32
n
6
C
32
A
U
33
n
7
U
33
A
70U
34
n
8
70U
34
A
U
35
n
9
U
35
A
U
36
n
10
U
36
A
12A
37
n
11
12A
37
A
A
38
n
12
A
38
A
U
39
n
13
U
39
A
C
40
n
14
C
40
A
U
41
n
15
U
41
A
G
42
n
16
G
42
A
C
43
n
17
C
43
A
author_defined_assembly
1
monomeric
A
70U
34
A
70U
8
U
A
12A
37
A
12A
11
A
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
2
A
A
H61
O4
A
U
31
39
1.43
2
A
A
O2
H22
C
G
28
42
1.46
2
A
A
H22
O2
G
C
27
43
1.48
2
A
A
N1
H3
A
U
29
41
1.53
2
A
A
H61
O4
A
U
29
41
1.56
3
A
A
O2
H22
C
G
28
42
1.40
3
A
A
H22
O2
G
C
30
40
1.46
3
A
A
H22
O2
G
C
27
43
1.47
3
A
A
H61
O4
A
U
31
39
1.52
3
A
A
N1
H3
A
U
29
41
1.59
4
A
A
H61
O4
A
U
31
39
1.46
4
A
A
H22
O2
G
C
30
40
1.55
5
A
A
H61
O4
A
U
31
39
1.41
5
A
A
N1
H3
A
U
31
39
1.55
5
A
A
H22
O2
G
C
30
40
1.55
6
A
A
H61
O4
A
U
31
39
1.42
6
A
A
N1
H3
A
U
31
39
1.54
7
A
A
H22
O2
G
C
30
40
1.41
7
A
A
O2
H22
C
G
28
42
1.48
7
A
A
H61
O4
A
U
31
39
1.54
7
A
A
N1
H3
A
U
31
39
1.56
8
A
A
O2
H22
C
G
28
42
1.39
8
A
A
H22
O2
G
C
27
43
1.47
8
A
A
H22
O2
G
C
30
40
1.48
8
A
A
H61
O4
A
U
31
39
1.52
8
A
A
N1
H3
A
U
29
41
1.58
9
A
A
H22
O2
G
C
27
43
1.50
9
A
A
O2
H22
C
G
28
42
1.52
9
A
A
H61
O4
A
U
29
41
1.54
9
A
A
H61
O4
A
U
31
39
1.58
10
A
A
O2
H22
C
G
28
42
1.40
10
A
A
H22
O2
G
C
27
43
1.42
10
A
A
H22
O2
G
C
30
40
1.45
10
A
A
N1
H3
A
U
29
41
1.60
11
A
A
O2
H22
C
G
28
42
1.43
11
A
A
H22
O2
G
C
27
43
1.48
11
A
A
H22
O2
G
C
30
40
1.49
11
A
A
N1
H3
A
U
29
41
1.53
11
A
A
H61
O4
A
U
31
39
1.55
5'-R(*GP*CP*AP*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*UP*CP*UP*GP*C)-3'
minimized average, model 1
minimized average
Solution Structure of the human Anti-codon Stem and loop(hASL) of transfer RNA Lysine 3 (tRNALys3)
1
N
N
covale
1.614
A
U
33
A
O3'
U
7
1_555
A
70U
34
A
P
70U
8
1_555
covale
1.608
A
70U
34
A
O3'
70U
8
1_555
A
U
35
A
P
U
9
1_555
covale
1.610
A
U
36
A
O3'
U
10
1_555
A
12A
37
A
P
12A
11
1_555
covale
1.605
A
12A
37
A
O3'
12A
11
1_555
A
A
38
A
P
A
12
1_555
hydrog
WATSON-CRICK
A
G
27
A
N1
G
1
1_555
A
C
43
A
N3
C
17
1_555
hydrog
WATSON-CRICK
A
G
27
A
N2
G
1
1_555
A
C
43
A
O2
C
17
1_555
hydrog
WATSON-CRICK
A
G
27
A
O6
G
1
1_555
A
C
43
A
N4
C
17
1_555
hydrog
WATSON-CRICK
A
C
28
A
N3
C
2
1_555
A
G
42
A
N1
G
16
1_555
hydrog
WATSON-CRICK
A
C
28
A
N4
C
2
1_555
A
G
42
A
O6
G
16
1_555
hydrog
WATSON-CRICK
A
C
28
A
O2
C
2
1_555
A
G
42
A
N2
G
16
1_555
hydrog
WATSON-CRICK
A
A
29
A
N1
A
3
1_555
A
U
41
A
N3
U
15
1_555
hydrog
WATSON-CRICK
A
A
29
A
N6
A
3
1_555
A
U
41
A
O4
U
15
1_555
hydrog
WATSON-CRICK
A
G
30
A
N1
G
4
1_555
A
C
40
A
N3
C
14
1_555
hydrog
WATSON-CRICK
A
G
30
A
N2
G
4
1_555
A
C
40
A
O2
C
14
1_555
hydrog
WATSON-CRICK
A
G
30
A
O6
G
4
1_555
A
C
40
A
N4
C
14
1_555
hydrog
WATSON-CRICK
A
A
31
A
N1
A
5
1_555
A
U
39
A
N3
U
13
1_555
hydrog
WATSON-CRICK
A
A
31
A
N6
A
5
1_555
A
U
39
A
O4
U
13
1_555
hydrog
C-A MISPAIR
A
C
32
A
O2
C
6
1_555
A
A
38
A
N6
A
12
1_555
RNA
RNA
2L9E
PDB
1
2L9E
27
43
2L9E
27
43
2L9E
A
1
1
17